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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00062162 ID=TCONS_00062162|Name=TCONS_00062162|organism=Clytia hemisphaerica|type=transcript|length=2025bp
TCACCACAGAGGAAGAAGAGTCGCTAGTTCAATATATAAAGAACAAAAAT
AGATGCCTCCAAGGACTGAACAAAACAGAGTTGACAAGGACAATGCTCAA
TGTTCTGGAAGTAAGAAAGCATGCCTACAAAAACCTTCGCGGACGTAACA
TCAAGAAACTATCCCCAAATGCACTACGAGCACTCACAACAAAAAAGCTT
AGCAAATCTTTTTGGAGGCGTTGGGATTCAAAGTATCAAAAGCAGATCAC
AAAGAAAAGACAAGGGACTGTATCAATAAATCGAGCTTTAAATTGCACAA
GAGAAATGGCTTGTAACCATTTGAATGAATTAGCTGAAGAGCTTATAAAA
ACTGATATTTTTGTTGATGCAGTCCAATTAGAAACTGGTGTTTGGCAGGG
GCATATTGATACAACAAGAGTTTTCAATCATGATGAAACTCCCCAGTTTG
TAAACTATGGAGTAGATGGTACTCCAAATGGTTTAGCATATGCTGGGCGA
GGGGAAAGCTGCCAGAAAATGATAAGAGAAAATAGGGAGTGTGTAACTTT
ACACCCTTTCGTTTCTTTTGGAGGAGAAATAGCTATGTGCCATATCATCT
TCAAGGGGAAAGGTATTAGTGCCCATATGGCCCCAAAGGAAGCAGTCGAA
AAGATTCCCAATCTTTTAATCTCCACAAATGACAGTGGCAGCCAAGATCA
CAGTACACTTCTGAGTGCTTATGAAATGTTTGACCACTATTTAGATGAGA
ATAGTATTCAACGACCTGTTGTTGTTTTATCTGATGGTCATTCTTCACGA
TTTGACAGTGATGTATTGacatttttaagaaacaaaaacattagACTTTT
CATCAGCCCTCCTGATACAACTGGTGTTACCCAGCTCCTTGATCAGATAA
ATCAAAAGTTGCACTCTGAGTACAGAAGTGCTAAGTCTGAACTTTTCTCT
CCATTTATGACAATCAACAGGGAAGGTTTCATGAAGATACTTGCAGAGTT
GTGGCCAGAGTGGGCATCAAATGAGACAATTACAAATGCAGGCAAAAAGG
TTGGCATCTCATGCAAAGGCCTCAGTGTTGAATGGATGCAAGCAGATAAG
TTTGCAAGAGCCGAGCTGTGTATTACCAAAAATACTGAACAACCTTCATC
TTCTTCAGTAACCATTTCATCTCCAAAACAAGTTCGTTATGACTCTGCAG
CCTATTGGAAGCATAAATATCATGGTGCCATGGAAGCTTATCAAACAATA
TCTGAAAAAGCATTATCACTAGAGGAAATTCCTAATTTGCTACCTGTGAC
CAAAGTAACACCAAAACCCAACAAAGAAAATGTGAGTTACCCAGGTTCAG
GGCTCAATGGAGGGGAAAGAAATATTAGAAAAAGTTTCAGAAATCAAGGA
AGCTAAAGCCAAAAAGGAGCAATTAAAGAAAGATAAGAAATCTAATCAAC
AGCAGCAAATTGAATCTTTCTTTAAGTGTAAGGATCAATGTACATGTGGT
AAGAATATTTGTGCTGCAAGTAAGCTTCGAGAATGCCCATGTTGTCATAA
TGTTTTAAAATCTATATGCAGTAAACTTTCATGCAGAGATGAATCAGGCT
CAAAACCAATAATGATCAAGCCAATTTGTGATAATGGTTCAAAGAAAAGC
CTTCATTTTGAATcagatgatgaaaatgacatcGGAATTGAAGACAACTT
GACTGATGTAGATGATGACGATATGAGTGGCTCTGAAAAGGTGGTTGATA
ATGCGGATCATGATTCAAGCAGTGATGAGCAGCAAGTTGGTTTAAAACGA
GGCGATTGTGTCAAGGTAGTTAAGGGGAATTATCTTGGATATTTTGCATT
GGTAACTGGCGATGGATACGGCGGAGAGACAGAACTTAACTATTTTGAGC
ATAGAAGTAAATGGTGGGTCCTAAAAGAAAAGGATTTAGATTCACGAGAG
AGAGGAGACCTTGAAAAGGTGGAGAACTTTACAATGGACAACAGATCACA
TTATTATTTCAAGTAGGCTTTCCTT Run BLAST on NCBI protein sequence of TCONS_00062162-protein >TCONS_00062162-protein ID=TCONS_00062162-protein|Name=TCONS_00062162-protein|organism=Clytia hemisphaerica|type=polypeptide|length=467bp
TTEEEESLVQYIKNKNRCLQGLNKTELTRTMLNVLEVRKHAYKNLRGRNI
KKLSPNALRALTTKKLSKSFWRRWDSKYQKQITKKRQGTVSINRALNCTR
EMACNHLNELAEELIKTDIFVDAVQLETGVWQGHIDTTRVFNHDETPQFV
NYGVDGTPNGLAYAGRGESCQKMIRENRECVTLHPFVSFGGEIAMCHIIF
KGKGISAHMAPKEAVEKIPNLLISTNDSGSQDHSTLLSAYEMFDHYLDEN
SIQRPVVVLSDGHSSRFDSDVLTFLRNKNIRLFISPPDTTGVTQLLDQIN
QKLHSEYRSAKSELFSPFMTINREGFMKILAELWPEWASNETITNAGKKV
GISCKGLSVEWMQADKFARAELCITKNTEQPSSSSVTISSPKQVRYDSAA
YWKHKYHGAMEAYQTISEKALSLEEIPNLLPVTKVTPKPNKENVSYPGSG
LNGGERNIRKSFRNQGS Run BLAST on NCBI transcript from alignment at scaffold_362:134674..136904+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00062162 ID=TCONS_00062162|Name=TCONS_00062162|organism=Clytia hemisphaerica|type=transcript|length=2231bp|location=Sequence derived from alignment at scaffold_362:134674..136904+ (Clytia hemisphaerica)
TCACCACAGAGGAAGAAGAGTCGCTAGTTCAATATATAAAGAACAAAAAT
AGGTAAGATTCAATATTGGCAATATTTCTTAAAGCTTGGAAATAATTAAA
TGTAAAACGAAACGTCAACATACACTGGACTTGGAAAGTTATCCCTTTTT
CTCTTCATTTCTGCTGAATTAAGGAAAATCTTTCCTAAGTTCCTGTAGTT
CCTCTTCTTGTTCCAAGAAACATTGAAATCCTCTATAATTAAACTTCATA
TATTTTAGATGCCTCCAAGGACTGAACAAAACAGAGTTGACAAGGACAAT
GCTCAATGTTCTGGAAGTAAGAAAGCATGCCTACAAAAACCTTCGCGGAC
GTAACATCAAGAAACTATCCCCAAATGCACTACGAGCACTCACAACAAAA
AAGCTTAGCAAATCTTTTTGGAGGCGTTGGGATTCAAAGTATCAAAAGCA
GATCACAAAGAAAAGACAAGGGACTGTATCAATAAATCGAGCTTTAAATT
GCACAAGAGAAATGGCTTGTAACCATTTGAATGAATTAGCTGAAGAGCTT
ATAAAAACTGATATTTTTGTTGATGCAGTCCAATTAGAAACTGGTGTTTG
GCAGGGGCATATTGATACAACAAGAGTTTTCAATCATGATGAAACTCCCC
AGTTTGTAAACTATGGAGTAGATGGTACTCCAAATGGTTTAGCATATGCT
GGGCGAGGGGAAAGCTGCCAGAAAATGATAAGAGAAAATAGGGAGTGTGT
AACTTTACACCCTTTCGTTTCTTTTGGAGGAGAAATAGCTATGTGCCATA
TCATCTTCAAGGGGAAAGGTATTAGTGCCCATATGGCCCCAAAGGAAGCA
GTCGAAAAGATTCCCAATCTTTTAATCTCCACAAATGACAGTGGCAGCCA
AGATCACAGTACACTTCTGAGTGCTTATGAAATGTTTGACCACTATTTAG
ATGAGAATAGTATTCAACGACCTGTTGTTGTTTTATCTGATGGTCATTCT
TCACGATTTGACAGTGATGTATTGacatttttaagaaacaaaaacattag
ACTTTTCATCAGCCCTCCTGATACAACTGGTGTTACCCAGCTCCTTGATC
AGATAAATCAAAAGTTGCACTCTGAGTACAGAAGTGCTAAGTCTGAACTT
TTCTCTCCATTTATGACAATCAACAGGGAAGGTTTCATGAAGATACTTGC
AGAGTTGTGGCCAGAGTGGGCATCAAATGAGACAATTACAAATGCAGGCA
AAAAGGTTGGCATCTCATGCAAAGGCCTCAGTGTTGAATGGATGCAAGCA
GATAAGTTTGCAAGAGCCGAGCTGTGTATTACCAAAAATACTGAACAACC
TTCATCTTCTTCAGTAACCATTTCATCTCCAAAACAAGTTCGTTATGACT
CTGCAGCCTATTGGAAGCATAAATATCATGGTGCCATGGAAGCTTATCAA
ACAATATCTGAAAAAGCATTATCACTAGAGGAAATTCCTAATTTGCTACC
TGTGACCAAAGTAACACCAAAACCCAACAAAGAAAATGTGAGTTACCCAG
GTTCAGGGCTCAATGGAGGGGAAAGAAATATTAGAAAAAGTTTCAGAAAT
CAAGGAAGCTAAAGCCAAAAAGGAGCAATTAAAGAAAGATAAGAAATCTA
ATCAACAGCAGCAAATTGAATCTTTCTTTAAGTGTAAGGATCAATGTACA
TGTGGTAAGAATATTTGTGCTGCAAGTAAGCTTCGAGAATGCCCATGTTG
TCATAATGTTTTAAAATCTATATGCAGTAAACTTTCATGCAGAGATGAAT
CAGGCTCAAAACCAATAATGATCAAGCCAATTTGTGATAATGGTTCAAAG
AAAAGCCTTCATTTTGAATcagatgatgaaaatgacatcGGAATTGAAGA
CAACTTGACTGATGTAGATGATGACGATATGAGTGGCTCTGAAAAGGTGG
TTGATAATGCGGATCATGATTCAAGCAGTGATGAGCAGCAAGTTGGTTTA
AAACGAGGCGATTGTGTCAAGGTAGTTAAGGGGAATTATCTTGGATATTT
TGCATTGGTAACTGGCGATGGATACGGCGGAGAGACAGAACTTAACTATT
TTGAGCATAGAAGTAAATGGTGGGTCCTAAAAGAAAAGGATTTAGATTCA
CGAGAGAGAGGAGACCTTGAAAAGGTGGAGAACTTTACAATGGACAACAG
ATCACATTATTATTTCAAGTAGGCTTTCCTT Coding sequence (CDS) from alignment at scaffold_362:134674..136904+ >TCONS_00062162 ID=TCONS_00062162|Name=TCONS_00062162|organism=Clytia hemisphaerica|type=CDS|length=2808bp|location=Sequence derived from alignment at scaffold_362:134674..136904+ (Clytia hemisphaerica)
ACCACAGAGGAAGAAGAGTCGCTAGTTCAATATATAAAGAACAAAAATAG
ATGCCTCCAAGGACTGAACAAAACAGAGTTGACAAGGACAATGCTCAATG
TTCTGGAAGTAAGAAAGCATGCCTACAAAAACCTTCGCGGACGTAACATC
AAGAAACTATCCCCAAATGCACTACGAGCACTCACAACAAAAAAGCTTAG
CAAATCTTTTTGGAGGCGTTGGGATTCAAAGTATCAAAAGCAGATCACAA
AGAAAAGACAAGGGACTGTATCAATAAATCGAGCTTTAAATTGCACAAGA
GAAATGGCTTGTAACCATTTGAATGAATTAGCTGAAGAGCTTATAAAAAC
TGATATTTTTGTTGATGCAGTCCAATTAGAAACTGGTGTTTGGCAGGGGC
ATATTGATACAACAAGAGTTTTCAATCATGATGAAACTCCCCAGTTTGTA
AACTATGGAGTAGATGGTACTCCAAATGGTTTAGCATATGCTGGGCGAGG
GGAAAGCTGCCAGAAAATGATAAGAGAAAATAGGGAGTGTGTAACTTTAC
ACCCTTTCGTTTCTTTTGGAGGAGAAATAGCTATGTGCCATATCATCTTC
AAGGGGAAAGGTATTAGTGCCCATATGGCCCCAAAGGAAGCAGTCGAAAA
GATTCCCAATCTTTTAATCTCCACAAATGACAGTGGCAGCCAAGATCACA
GTACACTTCTGAGTGCTTATGAAATGTTTGACCACTATTTAGATGAGAAT
AGTATTCAACGACCTGTTGTTGTTTTATCTGATGGTCATTCTTCACGATT
TGACAGTGATGTATTGacatttttaagaaacaaaaacattagACTTTTCA
TCAGCCCTCCTGATACAACTGGTGTTACCCAGCTCCTTGATCAGATAAAT
CAAAAGTTGCACTCTGAGTACAGAAGTGCTAAGTCTGAACTTTTCTCTCC
ATTTATGACAATCAACAGGGAAGGTTTCATGAAGATACTTGCAGAGTTGT
GGCCAGAGTGGGCATCAAATGAGACAATTACAAATGCAGGCAAAAAGGTT
GGCATCTCATGCAAAGGCCTCAGTGTTGAATGGATGCAAGCAGATAAGTT
TGCAAGAGCCGAGCTGTGTATTACCAAAAATACTGAACAACCTTCATCTT
CTTCAGTAACCATTTCATCTCCAAAACAAGTTCGTTATGACTCTGCAGCC
TATTGGAAGCATAAATATCATGGTGCCATGGAAGCTTATCAAACAATATC
TGAAAAAGCATTATCACTAGAGGAAATTCCTAATTTGCTACCTGTGACCA
AAGTAACACCAAAACCCAACAAAGAAAATGTGAGTTACCCAGGTTCAGGG
CTCAATGGAGGGGAAAGAAATATTAGAAAAAGTTTCAGAAATCAAGGAAG
CTAAACCACAGAGGAAGAAGAGTCGCTAGTTCAATATATAAAGAACAAAA
ATAGATGCCTCCAAGGACTGAACAAAACAGAGTTGACAAGGACAATGCTC
AATGTTCTGGAAGTAAGAAAGCATGCCTACAAAAACCTTCGCGGACGTAA
CATCAAGAAACTATCCCCAAATGCACTACGAGCACTCACAACAAAAAAGC
TTAGCAAATCTTTTTGGAGGCGTTGGGATTCAAAGTATCAAAAGCAGATC
ACAAAGAAAAGACAAGGGACTGTATCAATAAATCGAGCTTTAAATTGCAC
AAGAGAAATGGCTTGTAACCATTTGAATGAATTAGCTGAAGAGCTTATAA
AAACTGATATTTTTGTTGATGCAGTCCAATTAGAAACTGGTGTTTGGCAG
GGGCATATTGATACAACAAGAGTTTTCAATCATGATGAAACTCCCCAGTT
TGTAAACTATGGAGTAGATGGTACTCCAAATGGTTTAGCATATGCTGGGC
GAGGGGAAAGCTGCCAGAAAATGATAAGAGAAAATAGGGAGTGTGTAACT
TTACACCCTTTCGTTTCTTTTGGAGGAGAAATAGCTATGTGCCATATCAT
CTTCAAGGGGAAAGGTATTAGTGCCCATATGGCCCCAAAGGAAGCAGTCG
AAAAGATTCCCAATCTTTTAATCTCCACAAATGACAGTGGCAGCCAAGAT
CACAGTACACTTCTGAGTGCTTATGAAATGTTTGACCACTATTTAGATGA
GAATAGTATTCAACGACCTGTTGTTGTTTTATCTGATGGTCATTCTTCAC
GATTTGACAGTGATGTATTGacatttttaagaaacaaaaacattagACTT
TTCATCAGCCCTCCTGATACAACTGGTGTTACCCAGCTCCTTGATCAGAT
AAATCAAAAGTTGCACTCTGAGTACAGAAGTGCTAAGTCTGAACTTTTCT
CTCCATTTATGACAATCAACAGGGAAGGTTTCATGAAGATACTTGCAGAG
TTGTGGCCAGAGTGGGCATCAAATGAGACAATTACAAATGCAGGCAAAAA
GGTTGGCATCTCATGCAAAGGCCTCAGTGTTGAATGGATGCAAGCAGATA
AGTTTGCAAGAGCCGAGCTGTGTATTACCAAAAATACTGAACAACCTTCA
TCTTCTTCAGTAACCATTTCATCTCCAAAACAAGTTCGTTATGACTCTGC
AGCCTATTGGAAGCATAAATATCATGGTGCCATGGAAGCTTATCAAACAA
TATCTGAAAAAGCATTATCACTAGAGGAAATTCCTAATTTGCTACCTGTG
ACCAAAGTAACACCAAAACCCAACAAAGAAAATGTGAGTTACCCAGGTTC
AGGGCTCAATGGAGGGGAAAGAAATATTAGAAAAAGTTTCAGAAATCAAG
GAAGCTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00062162-exon-scaffold_362-1491911889:134674..134725 | TCONS_00062162-exon-scaffold_362-1491911889:134674..134725 | Clytia hemisphaerica | exon |
| TCONS_00062162-exon-scaffold_362-1510915933:134674..134725 | TCONS_00062162-exon-scaffold_362-1510915933:134674..134725 | Clytia hemisphaerica | exon |
| TCONS_00062162-exon-scaffold_362-1575043694:134674..134725 | TCONS_00062162-exon-scaffold_362-1575043694:134674..134725 | Clytia hemisphaerica | exon |
| TCONS_00062162-exon-scaffold_362-1491911889:134932..136904 | TCONS_00062162-exon-scaffold_362-1491911889:134932..136904 | Clytia hemisphaerica | exon |
| TCONS_00062162-exon-scaffold_362-1510915933:134932..136904 | TCONS_00062162-exon-scaffold_362-1510915933:134932..136904 | Clytia hemisphaerica | exon |
| TCONS_00062162-exon-scaffold_362-1575043694:134932..136904 | TCONS_00062162-exon-scaffold_362-1575043694:134932..136904 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_362 | supercontig | scaffold_362:134674..136904 + |
Blast
The following BLAST results are available for this feature:
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