TCONS_00059551 (transcript) - C. hemisphaerica

Overview
NameTCONS_00059551
Unique NameTCONS_00059551
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1786

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00059551 ID=TCONS_00059551|Name=TCONS_00059551|organism=Clytia hemisphaerica|type=transcript|length=1786bp
ACCTCCGGTGATGGTGACGGTGATCGTCTGTCGTCgtcaatttcaaaatt
atacTCTTCGCCGTTGATTTTACGATGGCTCAATTTATTCATTCGATCAT
GATTTGATTCTATCAGCGGTTTGGCAATTAATTCTGTCGTAGGTTTGTTA
CTCGATTCTGTCGTCGGTTTGTTACTCGATTCTGTCGTCGGTTTGGCAAT
CAATTCTGCCATCGGTTTGGCAATCGATTCTGTCGTCGGTTTGTTAATCA
ATTCTGCCATCGGTTTGGCAATCGATTCTGTCGTCGGTTTGGCAATCGAT
TCTGTCGGCGTTTTGGCAATCGGTTCTGTTGGTGCTTTTTCAATCGAATC
TGTCGAATCGTCGAAGTCGCCATGTTTAGGTACTGTTATTGTTTCACTTG
TTTTAAACTCCTTCGtagcttttttcaaaatagatctTAGCTTTGGTTTA
GGTGATGATATCTCTAATGGAGGCTCCTCTGCAAGATCAATGACAGGTTC
GTCTGTTGTAGGGGATGTGGGTCGGTAAATGTCTTTCAACTCCTCTCTAC
TTTTCTTTGGTCCAAATACTCCAAAGCCTAACGGTGATGCATGACTTTTA
TCTGGGGTATTTGTGTTTTTAAGCCATGGCGGGGGAGTTTTTGATGGAGT
TTGTTCTGGAGCTTGTATTTGGGAGGCATCATGCCTGATATCTTGAATAT
CCCTACCTTTATTAAACCAAGGCGGGGGAGTTTTTGCTGGAGTTTGCTCT
GGAGTTTGTATTCGAGAGACATTATGCCTGATTTCTTGAATATCCCTGCC
TTTATTAAACCAAGGCGGGGGACTTTGGAGTTGAGATTGTTCTGAGGTTA
ACGTTTCGGTGCTAGGAATTGATAATGATAAATCACTCTTACGAGGTGCC
ACGGAGTCCCATGGATACTGCACTACAGCTTTTTCTTTTGGTGGAggatt
ttgaacttttgaaacaTTGCGAGGTGGTGAATGCGGTGGACTCGTTAAAT
CAATCTTTGAAGGGTTTTGGCTTTGAGGTGGACGAAGAAGTGGATGACCA
GGAGCTGACGGCCGTACGATTGGTGCATTTTGACGCATCCTTGGGTTTGG
ATTTGGTATAATTGGACTCCTTATCATATTTGGAGACATAACAGGAGGTC
CCATAAATGGACGTGGTGGGGCGCCGACAAATCTAGGAGGAAAGCGGTTG
GGTATAATGTAGGGTTGCGGAGGGAAAGCGTGTGTGACAGTGTTCGTAGC
ACCATGAAAGAAAGCCATTGTTACATTTACATTATTCGGCTGTTGAAGAA
ATGAATTTACATTTGAAGCATGTCTATTAGAATCACCGCGATATCTACCT
CTGCGTTTATTTGTAAGACGTATAGTTCTGTATCTACCACCTCCTTTTTT
CACTCTAACACGATGTACATAGTCATTATCATCAGAGTCCCCCGATCGGG
AGGGAGATCGTGACGGGGATCTCGACAATGATCTTGAGGATCTTGAACAT
CTTGAGGACCTTGGTGATCTTGGTGATCCTGGAGTCCTGCTTGGCGATCT
TGGAGACCTTGGCGATCTTGGAGATCTTGAGGATCTTGAGGATCTTGAGG
ACCTTGGCGATCTTGGCGATTTTGAGGATATTGACAATCTTGAAGATCTT
GATGATCTGGACGAGATAGATTCGTGATCAGAATCATCATTTTTTGTAAG
GTCTTGTACCACTGGTTGTCTGTAAGGATCAGTTGTATTaggcttcattt
ttcatttttgttattattaatttcatctttatttct
Run BLAST on NCBI

transcript from alignment at scaffold_329:643229..645179+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00059551 ID=TCONS_00059551|Name=TCONS_00059551|organism=Clytia hemisphaerica|type=transcript|length=1951bp|location=Sequence derived from alignment at scaffold_329:643229..645179+ (Clytia hemisphaerica)
ACCTCCGGTGATGGTGACGGTGATCGTCTGTCGTCgtcaatttcaaaatt atacTCTTCGCCGTTGATTTTACGATGGCTCAATTTATTCATTCGATCAT GATTTGATTCTATCAGCGGTTTGGCAATTAATTCTGTCGTAGGTTTGTTA CTCGATTCTGTCGTCGGTTTGGCAATCGATTCTGTCGTCGGTTTGGCAAT CAATTCTATCGTCGGTTTGGCAATCAATTCTGTCGTAGGTTTGTTACTCG ATTCTGTCGTCGGTTTGGCAATCAATTCTGCCATCGGTTTGGCAATCGAT TCTGTCGTCGGTTTGTTAATCAATTCTGCCATCGGTTTGGCAATCGATTC TGTCGTCGGTTTGGCAATCGATTCTGTCGGCGTTTTGGCAATCGGTTCTG TTGGTGCTTTTTCAATCGAATCTGTCGAATCGTCGAAGTCGCCATGTTTA GGTACTGTTATTGTTTCACTTGTTTTAAACTCCTTCGtagcttttttcaa aatagatctTAGCTTTGGTTTAGGTGATGATATCTCTAATGGAGGCTCCT CTGCAAGATCAATGACAGGTTCGTCTGTTGTAGGGGATGTGGGTCGGTAA ATGTCTTTCAACTCCTCTCTACTTTTCTTTGGTCCAAATACTCCAAAGCC TAACGGTGATGCATGACTTTTATCTGGGGTATTTGTGTTTTTAAGCCATG GCGGGGGAGTTTTTGATGGAGTTTGTTCTGGAGCTTGTATTTGGGAGGCA TCATGCCTGATATCTTGAATATCCCTACCTTTATTAAACCAAGGCGGGAG AGCTTTTGCTTGAGTTTGTTCCGGAGTTTTTATTTGAGAGGTATCATGTC TGATATCTTGAATATCCCTGCCATTATTAAACCAAGGCGGGGGAGTTTTT GCTGGAGTTTGCTCTGGAGTTTGTATTCGAGAGACATTATGCCTGATTTC TTGAATATCCCTGCCTTTATTAAACCAAGGCGGGGGACTTTGGAGTTGAG ATTGTTCTGAGGTTAACGTTTCGGTGCTAGGAATTGATAATGATAAATCA CTCTTACGAGGTGCCACGGAGTCCCATGGATACTGCACTACAGCTTTTTC TTTTGGTGGAggattttgaacttttgaaacaTTGCGAGGTGGTGAATGCG GTGGACTCGTTAAATCAATCTTTGAAGGGTTTTGGCTTTGAGGTGGACGA AGAAGTGGATGACCAGGAGCTGACGGCCGTACGATTGGTGCATTTTGACG CATCCTTGGGTTTGGATTTGGTATAATTGGACTCCTTATCATATTTGGAG ACATAACAGGAGGTCCCATAAATGGACGTGGTGGGGCGCCGACAAATCTA GGAGGAAAGCGGTTGGGTATAATGTAGGGTTGCGGAGGGAAAGCGTGTGT GACAGTGTTCGTAGCACCATGAAAGAAAGCCATTGTTACATTTACATTAT TCGGCTGTTGAAGAAATGAATTTACATTTGAAGCATGTCTATTAGAATCA CCGCGATATCTACCTCTGCGTTTATTTGTAAGACGTATAGTTCTGTATCT ACCACCTCCTTTTTTCACTCTAACACGATGTACATAGTCATTATCATCAG AGTCCCCCGATCGGGAGGGAGATCGTGACGGGGATCTCGACAATGATCTT GAGGATCTTGAACATCTTGAGGACCTTGGTGATCTTGGTGATCCTGGAGT CCTGCTTGGCGATCTTGGAGACCTTGGCGATCTTGGAGATCTTGAGGATC TTGAGGATCTTGAGGACCTTGGCGATCTTGGCGATTTTGAGGATATTGAC AATCTTGAAGATCTTGATGATCTGGACGAGATAGATTCGTGATCAGAATC ATCATTTTTTGTAAGGTCTTGTACCACTGGTTGTCTGTAAGGATCAGTTG TATTaggcttcatttttcatttttgttattattaatttcatctttatttc t
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_037472XLOC_037472Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00059551-exon-scaffold_329-1491911889:643229..643394TCONS_00059551-exon-scaffold_329-1491911889:643229..643394Clytia hemisphaericaexon
TCONS_00059551-exon-scaffold_329-1510915933:643229..643394TCONS_00059551-exon-scaffold_329-1510915933:643229..643394Clytia hemisphaericaexon
TCONS_00059551-exon-scaffold_329-1575043694:643229..643394TCONS_00059551-exon-scaffold_329-1575043694:643229..643394Clytia hemisphaericaexon
TCONS_00059551-exon-scaffold_329-1491911889:643467..644021TCONS_00059551-exon-scaffold_329-1491911889:643467..644021Clytia hemisphaericaexon
TCONS_00059551-exon-scaffold_329-1510915933:643467..644021TCONS_00059551-exon-scaffold_329-1510915933:643467..644021Clytia hemisphaericaexon
TCONS_00059551-exon-scaffold_329-1575043694:643467..644021TCONS_00059551-exon-scaffold_329-1575043694:643467..644021Clytia hemisphaericaexon
TCONS_00059551-exon-scaffold_329-1491911889:644115..645179TCONS_00059551-exon-scaffold_329-1491911889:644115..645179Clytia hemisphaericaexon
TCONS_00059551-exon-scaffold_329-1510915933:644115..645179TCONS_00059551-exon-scaffold_329-1510915933:644115..645179Clytia hemisphaericaexon
TCONS_00059551-exon-scaffold_329-1575043694:644115..645179TCONS_00059551-exon-scaffold_329-1575043694:644115..645179Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_329supercontigscaffold_329:643229..645179 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

min expression (0.309536 tpm) - - (5.40818 tpm) max expressionaGrOo_1GrOo_2FGOo_1FGOo_2EG_1EG_2P1_1P1_2P2_1P2_2P3_1P3_2PoPr_1PoPr_2St_1St_2GO_1GO_2PH_1PH_2BMF_1BMF_2MMF_1MMF_2M_1M_2GEC_1GEC_2GEN_1GEN_2
Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.91622 1.86042 0.309536 0.32476 5.40818 3.15632 3.86194 2.70002 0.766014 2.47409 1.454 1.25139 1.72068 1.48026 1.53769 1.65105 1.36854 1.99514 0.946639 1.23188 1.046 0.803522 1.57531 2.1618 2.96488 2.78328 0.607817 0.564679 2.85894 3.0823
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00059551 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
ZOOM
x 1
POSITION
0
2004006008001000120014001600Sequence
Match NameE-valueIdentityDescription
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