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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00059610 ID=TCONS_00059610|Name=TCONS_00059610|organism=Clytia hemisphaerica|type=transcript|length=2538bpRun BLAST on NCBI protein sequence of TCONS_00059610-protein >TCONS_00059610-protein ID=TCONS_00059610-protein|Name=TCONS_00059610-protein|organism=Clytia hemisphaerica|type=polypeptide|length=695bp MSSPRSPERTIRTPNGSVSYYYYDQSPRRSTGERTNQVTRSPKSSPEHNRRun BLAST on NCBI transcript from alignment at scaffold_329:707596..720478- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00059610 ID=TCONS_00059610|Name=TCONS_00059610|organism=Clytia hemisphaerica|type=transcript|length=12883bp|location=Sequence derived from alignment at scaffold_329:707596..720478- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_329:707596..720478- >TCONS_00059610 ID=TCONS_00059610|Name=TCONS_00059610|organism=Clytia hemisphaerica|type=CDS|length=18792bp|location=Sequence derived from alignment at scaffold_329:707596..720478- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00059610 vs. Swiss-Prot (Human)
Match: VGLU1 (Vesicular glutamate transporter 1 OS=Homo sapiens GN=SLC17A7 PE=2 SV=1) HSP 1 Score: 365.54 bits (937), Expect = 3.467e-115 Identity = 187/451 (41.46%), Postives = 265/451 (58.76%), Query Frame = 1
Query: 967 PKRYILAIMMFMGFVNMYAVRVNLNVAIGAMVNNHTVVKNGVAITVAPEFNWSSRLQGVVLGSFYYGYMFLQIPGGYFALKFGGTRIFGVGVLLASILTIFTPIATRYSVWALVVLRILEGLVLGVMLPCNHQIWASWAPLPERTTLVTIALAGMNVGTVVTMPLTGLLTKYGFDGGWASVFYCFGLFGIVWYILWFLVVHSTPATHPTISKKERQYIENHTV-------PRKSTNIPWCTMLSSKAVWAVIIGNITNDWGLYTILICLPIFLMDIMKFDIQTMGFIASLPFLLKAIVGPLGGVIADLLR-YKYMSTINVRRLFFALGSISAAILIVVTGYSHSPIIAVVSMCLGVAMSGLLHSGYEVNILDIAPGLSGIVMGITNTAGTTTGFLSPLFVGFMTENKLRSEWIVVFWLTFFIYVIGTILYCLMLSGEAQHWSMDDEDEEAR 2295
P+RYI+AIM +GF + +R NL VAI +MVNN T + G + +F+W G++ GSF++GY+ QIPGG+ KF R+FG ++ S L + P A R ++ +RIL+GLV GV P H IW+ WAP ER+ L T A G G VV MPL G+L +Y GW+SVFY +G FGI WY+ W LV + +PA HP+IS++ER+YIE+ P + PW +S V+A+I+ N W Y +LI P + ++ F+I +G +++LP L+ I+ P+GG IAD LR + MST NVR+L G A L++V GYSHS +A+ + L V SG SG+ VN LDIAP + I+MGI+N GT +G + P+ VG MT++K R EW VF + ++ G I Y + SGE Q W+ +E E +
Sbjct: 60 PRRYIIAIMSGLGFCISFGIRCNLGVAIVSMVNNSTTHRGGHVVVQKAQFSWDPETVGLIHGSFFWGYIVTQIPGGFICQKFAANRVFGFAIVATSTLNMLIPSAARVHYGCVIFVRILQGLVEGVTYPACHGIWSKWAPPLERSRLATTAFCGSYAGAVVAMPLAGVLVQY---SGWSSVFYVYGSFGIFWYLFWLLVSYESPALHPSISEEERKYIEDAIGESAKLMNPLTKFSTPWRRFFTSMPVYAIIVANFCRSWTFYLLLISQPAYFEEVFGFEISKVGLVSALPHLVMTIIVPIGGQIADFLRSRRIMSTTNVRKLMNCGGFGMEATLLLVVGYSHSKGVAISFLVLAVGFSGFAISGFNVNHLDIAPRYASILMGISNGVGTLSGMVCPIIVGAMTKHKTREEWQYVFLIASLVHYGGVIFYGVFASGEKQPWAEPEEMSEEK 507 The following BLAST results are available for this feature:
BLAST of TCONS_00059610 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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