TCONS_00059613 (transcript) - C. hemisphaerica

Overview
NameTCONS_00059613
Unique NameTCONS_00059613
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2164

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00059613 ID=TCONS_00059613|Name=TCONS_00059613|organism=Clytia hemisphaerica|type=transcript|length=2164bp
GAAAGTGAAGCTAGAAATTAGATTCTTTCTAACGTTTAAATGCAGTAAAT
TTAAATTCTCTTTTACTGTTTGAATATCTTAAATTCAtccaaaaaagtgt
attttctaTCCATGTCCGCAGATCATTGTTTGCTCAAGCATGGGGTGTTG
GGTGGCTATACTTGGCACTCTTGATCGACTAAATCGAATTCATAGTATAA
TCTCAATTGCAAGTGCTGTTGATACAATGTACCATAGGTTTAAAGAGTTT
TCAGAAGACGAGAAAAACACCATAAAGCAACAAGGGTATTGGATTGGCCC
AAAAACAGGTTCTGTATTTGGGTACAACTTTTTACAAAGTTGTATTGATA
ATACGCTAATGACTGTAAAGGAAAAGCAGATTCAAATCTATTGTCCCATT
CGTATTTTACATGGAATGAGTGATGATGTAGTTCCATATCAAGTATCATT
GAAACTTTCCAAAATGATTTCCAGTAATGATATTGAAGTTCATTTGGTGA
AACATTTTGATCACATGATGAACTCTGATGAAGCCTTGGCATTGTTGAGC
AAAGTTTTAGACGAAATGGTTAAGGTTGGTTTGGATTCTGATGTTTATTT
ACAAGCACCTTCTAAGCTTTGATTATTCCTAATTATCATGAAAGGGTACA
CAATGTGATCTGTAGAGAAATATGCAGCATATTTCTCAACTTAGAACCTT
Gatgaaaggttttgtttttaaataagagtgataaagtttgctttctcatc
atttttaattcacaagcttttcatATTgtattgacacggatgtggagcaa
gactggtcagaaagaggaaaagaaaaacattttttcgcttatatcagcat
aatataacaaaaggcagacactgccctgatatgaaataaTGGGTTTGATA
TAAAACGAAAACACTTatgcaaaaataaaacctttaacgatTACAAGTGA
TGATAAAATcattaattcatttttagaaaaatcaagaaatcattttaaat
ttcaaaaaagaatcaaTCTGAACAATCAATGAAATGCGTGATTGATTAAG
AATGTCAATTGAAGGGAGATTAGAACTGGAAAATGGAGATTATATCCATT
ATATCCAGCGAAAAAGCCAAAACTTTACCAGACATGGGATTATTTATGTA
CATGGTTATGAATCCCACTCTAATTGCCGACAAGCTAGATTTCTAGACAA
ATTTTGTACTGACAATGGTTTATCTTTTGTAAGATTTGATTTTTATGGTC
ATGGAAAATCGAGTGGTACCTTATATGATTTGACGTTAtctaaaatgaaa
caaaattttcttgatGTTTTGGATAAGTTAACTCAGGGCCCACAAATCAT
CATTGGTTTTAGTATTGGCGGTTTGGTTTCATTTGTTGGAGCCTTGGAAC
GACCAGAGAGAATCCATAGcattatttcaatttcaaatgcTGCTGATGCA
ACTTACAACAACTTTCATATTCACAGAACTGATGAAGAGAGACAAATGGT
CAAAGATAAAGGTTACTTCATGAGCAGAGTAAATCATGTTGTTTGTTATG
ACTTGTGCATTGACAGTAAAAACCACTTACTCGTGCACGACTCTGTTAAA
GAAATCGCCCTGAATTGTCCTATACGTTTCTTGCATGGTATGTCTGATAC
AACTATACATTGGAAAGTCTCTGTGGCGTTAGCCAAGAAGGTTGTTAGTC
AAGATGTCAAAGTTCAACTGGTGAAAACAGCAAAACATGGATTTAATTCT
AAAAACGAGTTGAATATACTGAAAGAGACTTTGAATGAATTGGTTGGAAT
GGATAGCCATAAATCTAAATTGTAAAAGTATTGTAATGCTAATaatatga
ttttcaaatttacatatttttcccatttttcttttttctttttgatggtt
tccttcactaagCATTGCGCTGTAGTTTTGATGAAGATGATAAATTATTC
tatacatatttttaaaattttaagctGCAACCAGTAATATCAATTAggta
ttattgtttttttttacaaaaagcaAACCAAATCATTTATCGAATTTGGC
TCTAACCTTTAGATCTAATTAAAAGAGTacaatattttatcatttaaaat
ctccaaaaattgtaaataaatGAATATGAATAGACAAACTTTCACGTCAA
CGATTGAAGATGAC
Run BLAST on NCBI

transcript from alignment at scaffold_329:722976..727802-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00059613 ID=TCONS_00059613|Name=TCONS_00059613|organism=Clytia hemisphaerica|type=transcript|length=4827bp|location=Sequence derived from alignment at scaffold_329:722976..727802- (Clytia hemisphaerica)
GAAAGTGAAGCTAGAAATTAGATTCTTTCTAACGTTTAAATGCAGTAAAT
TTAAATTCTCTTTTACTGTTTGAATATCTTAAATTCATCCAAAAAAGTGT
ATTTTCTATCCATGTCCGCAGATCATTGTTTGCTCAAGCATGGGGTGTTG
GGTGGCTATACTTGGCACTCTTGATCGACTAAATCGAATTCATAGTATAA
TCTCAATTGCAAGTGCTGTTGATACAATGTACCATAGGTTAGCTCATATA
AAAGCAATTAATATTTTTTAGTTTGCACAGATTTTGAATCTAGTTGCCCT
AAACTTATTTTCCAAGTTATTAGCTTCTTTTAACACTGTAAAAAAATTGA
TATATTCAAAAGTTTAACACAAAGAACACGCTCTGCCTTTAGGTTTAAAG
AGTTTTCAGAAGACGAGAAAAACACCATAAAGCAACAAGGGTATTGGATT
GGCCCAAAAACAGGTTCTGTATTTGGGTACAACTTTTTACAAAGTTGTAT
TGATAATACGCTAATGACTGTAAAGGAAAAGCAGATTCAAATCTATTGTC
CCATTCGTATTTTACATGGAATGAGTGATGATGTAGTTCCATATCAAGTA
TCATTGAAACTTTCCAAAATGATTTCCAGTAATGATATTGAAGTTCATTT
GGTGAAACATTTTGATCACATGATGAACTCTGATGAAGCCTTGGCATTGT
TGAGCAAAGTTTTAGACGAAATGGTTAAGGTTGGTTTGGATTCTGATGTT
TATTTACAAGCACCTTCTAAGCTTTGATTATTCCTAATTATCATGAAAGG
GTACACAATGTGATCTGTAGAGAAATATGCAGCATATTTCTCAACTTAGA
ACCTTGATGAAAGGTTTTGTTTTTAAATAAGAGTGATAAAGTTTGCTTTC
TCATCATTTTTAATTCACAAGCTTTTCATATTGTATTGACACGGATGTGG
AGCAAGACTGGTCAGAAAGAGGAAAAGAAAAACATTTTTTCGCTTATATC
AGCATAATATAACAAAAGGCAGACACTGCCCTGATATGAAATAATGGGTT
TGATATAAAACGAAAACACTTATGCAAAAATAAAACCTTTAACGATTACA
AGTGATGATAAAATCATTAATTCATTTTTAGAAAAATCAAGAAATCATTT
TAAATTTCAAAAAAGAATCAATCTGAACAATCAATGAAATGCGTGATTGA
TTAAGAATGTCAATTGAAGGGAGATTAGAACTGGAAAATGGAGATTATAT
CCATTATATCCAGCGAAAAAGCCAAAACTTTACCAGACATGGGATTATTT
ATGTACATGGTTATGAATCCCACTCTAATTGCCGACAAGCTAGATTTCTA
GACAAATTTTGTACTGACAATGGTTTATCTTTTGTAAGATTTGATTTTTA
TGGTCATGGAAAATCGAGTGGTACCTTATATGATTTGACGTTATCTAAAA
TGAAACAAAATTTTCTTGATGTTTTGGATAAGTTAACTCAGGGTAATGTA
TTCTCATTATTTTTCAAGGTTTTGTTGGGGGTCATAATCAAAGGCGTCCA
AAGTCGTTATAAGAGCATAATCATTTCTGATTATTCACGTTAAAAAGTCG
GTTAGTGTAAAACACAGGTCACAGGTCACAGGTCACGGGTCACAGGTCAC
GGGTCACAGGTCACAGGTCATACAAATTACAGACCGGAAAACTGTAACGC
ACTCGTAACATACAACCCATAACATACAACTCATAACAAAAGTTTCTGAA
AATATTATATGTAAAGGAAATGTAATATCAAAATATGGTATTTAGAAGAC
TTAAACGACAAATCATCAACCCCAAAAATTGACAACAAATGACACCTAAA
TTATGTAAATAATGATGTTATCTCAAAGTATGAGGTTTTGTACACCAATT
AACAATAAAATATTTATCATGCGTAATAGGATGCCGACGCTNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAACATTTATAAAATA
TAATCCCATTGACGCTATTTTCATCAATTCTTGTTATCATACCCAAGGTG
ATGCAGGAGATAAAATGAGATATGACATTAGTGATCGTGAAATAGCTATT
TTCCTGTTAGGAGCTGTTTAAGGCAAAGGTGAGATCGATATTCGAATATT
TCTTTATTCTTTGTATATAACATTCGTAACATGCGTATAACATTGAAAAG
ATAACTTTTTTGCATGTGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTTTTTTGCATGT
GTGATATAGATGTAATATATAATACAAGTATTACAGGTCCGTGTTATACA
CGGCATAAAACGCAAAATCACGTGGTAAGCACGTGGGTAGAATTTTAGCT
TTAAAATAGTTCTAGATCAATAAAATACCTTTGGAATTATATCATTGACA
TTAACAACTGTTTTTCAAACATTTTCTTTGTGTTTTACAGTAATCAAAGC
TGACCTGTCAACACTGACCTGTGACCTGTGACCTGCGTTTTACACTAACC
GTTAAAAAGTGGTTTCAAAATGATCTTAATAGACTGGTTCCATGTGGCCT
CATTTTCACCAACAATTAGCCATTTTTCTAGGACATGGTAGAAAGAATAT
GTACATGATGATTCAGTAAAACCTTGATAGCTCAAAGTCTTATAATATTT
TTCCATTTGGAAATAAAGTTTTTTGTTTGTTTGTAGGTGAAATTTATATC
AATAAGGAACAGATAGCTTGCGTGAGGTTTACTTGAAGATACTCCATAAC
TGGATTTTGCCGATCCGGTTTATAGGTATCAATTTCTGTAAAAGTGCGCG
AAATAACACAAACATTATTATTTTAGGCCCACAAATCATCATTGGTTTTA
GTATTGGCGGTTTGGTTTCATTTGTTGGAGCCTTGGAACGACCAGAGAGA
ATCCATAGCATTATTTCAATTTCAAATGCTGCTGATGCAACTTACAACAA
GTAGGAATCGCCTTCAACACCCCTGTGACACAGACCTGCTGGGACCCCTA
CCCCCACTTGATAATTTTGCCAAAACTTTAACCCATTGGGAAATTGACTT
TGGTCTTATCCCCCATTTGAAATTCAAGGGAAAGAATTGCACTCAAAAGA
ACACCTACTGGATTTTTTCGACTTTGGAACAATAGAATTTCTATCCCAAT
TGAGATTTTGATAGAAATTTTCATCCCCACTGTAAGAAAAATTCTCATTG
TGAGAAAACTTCTTACAGGGACTGCGAGACAATTTATTATTCAACAAAAA
GACAAATTATACTTTCTACCAGGCCCAAATACATTTTTTTTGTTGAATAA
TAAATCCCAAAACTTACCAATACCGAGTTTATTTTCACAATTAAAGGAGA
TCTTGAAAATTAATTTCAAAGATAATTAATAAAAATGTGTTTTTGAAAAG
AGGGACTAATCAATTCATGTGAATTATGAGGAATAAATTTCATTCTCTCT
TGGTTTTTTTTTTGACAAAATGTAAAGAAGTAGAGCCTTGTGGCGAGTAT
CTCTTCCACACTTTCTTAATTTTTTAGAACTGGATAATTTTAAATGGAAA
ATTTCTGGAGGATATCGACGCTGTAATCGTGTCGTACTTTCATTGGGCTT
GCTATTCCAGAAAAATTTGTACCCCTAATGTTGTGGAGGTTTTTTTTGGG
AAAGGTGACCTCCTGGATTTTTTCAAGTATCAAGCCCTCCTTGGATTATT
TTTCTCATTTTGTGGACCACCTTGGATTTTTTACCTCGTTTTACTGACCA
CCCTGGATTTTACACCTCATTTTACTGACCAAAACGAAAATTTGAAAAAG
GAACAAATTTCATATGATACTTTCTTGTTTCATAGCTTTCATATTCACAG
AACTGATGAAGAGAGACAAATGGTCAAAGATAAAGGTTACTTCATGAGCA
GAGTAAATCATGTTGTTTGTTATGACTTGTGCATTGACAGTAAAAACCAC
TTACTCGTGCACGACTCTGTTAAAGAAATCGCCCTGAATTGTCCTATACG
TTTCTTGCATGGTATGTCTGATACAACTATACATTGGAAAGTCTCTGTGG
CGTTAGCCAAGAAGGTTGTTAGTCAAGATGTCAAAGTTCAACTGGTGAAA
ACAGCAAAACATGGATTTAATTCTAAAAACGAGTTGAATATACTGAAAGA
GACTTTGAATGAATTGGTTGGAATGGATAGCCATAAATCTAAATTGTAAA
AGTATTGTAATGCTAATAATATGATTTTCAAATTTACATATTTTTCCCAT
TTTTCTTTTTTCTTTTTGATGGTTTCCTTCACTAAGCATTGCGCTGTAGT
TTTGATGAAGATGATAAATAGACTTTGTGAACTTACTAAAACTTTTAACG
CCACACATTATTCTATACATATTTTTAAAATTTTAAGCTGCAACCAGTAA
TATCAATTAGGTATTATTGTTTTTTTTTACAAAAAGCAAACCAAATCATT
TATCGAATTTGGCTCTAACCTTTAGATCTAATTAAAAGAGTACAATATTT
TATCATTTAAAATCTCCAAAAATTGTAAATAAATGAATATGAATAGACAA
ACTTTCACGTCAACGATTGAAGATGAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_037497XLOC_037497Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00059613-exon-scaffold_329-1575043694:727566..727802TCONS_00059613-exon-scaffold_329-1575043694:727566..727802Clytia hemisphaericaexon
TCONS_00059613-exon-scaffold_329-1575043694:726311..727410TCONS_00059613-exon-scaffold_329-1575043694:726311..727410Clytia hemisphaericaexon
TCONS_00059613-exon-scaffold_329-1575043694:724603..724726TCONS_00059613-exon-scaffold_329-1575043694:724603..724726Clytia hemisphaericaexon
TCONS_00059613-exon-scaffold_329-1575043694:723236..723717TCONS_00059613-exon-scaffold_329-1575043694:723236..723717Clytia hemisphaericaexon
TCONS_00059613-exon-scaffold_329-1575043694:722976..723196TCONS_00059613-exon-scaffold_329-1575043694:722976..723196Clytia hemisphaericaexon
TCONS_00059613-exon-scaffold_329-1510915933:727566..727802TCONS_00059613-exon-scaffold_329-1510915933:727566..727802Clytia hemisphaericaexon
TCONS_00059613-exon-scaffold_329-1510915933:726311..727410TCONS_00059613-exon-scaffold_329-1510915933:726311..727410Clytia hemisphaericaexon
TCONS_00059613-exon-scaffold_329-1510915933:724603..724726TCONS_00059613-exon-scaffold_329-1510915933:724603..724726Clytia hemisphaericaexon
TCONS_00059613-exon-scaffold_329-1510915933:723236..723717TCONS_00059613-exon-scaffold_329-1510915933:723236..723717Clytia hemisphaericaexon
TCONS_00059613-exon-scaffold_329-1510915933:722976..723196TCONS_00059613-exon-scaffold_329-1510915933:722976..723196Clytia hemisphaericaexon
TCONS_00059613-exon-scaffold_329-1491911889:727566..727802TCONS_00059613-exon-scaffold_329-1491911889:727566..727802Clytia hemisphaericaexon
TCONS_00059613-exon-scaffold_329-1491911889:726311..727410TCONS_00059613-exon-scaffold_329-1491911889:726311..727410Clytia hemisphaericaexon
TCONS_00059613-exon-scaffold_329-1491911889:724603..724726TCONS_00059613-exon-scaffold_329-1491911889:724603..724726Clytia hemisphaericaexon
TCONS_00059613-exon-scaffold_329-1491911889:723236..723717TCONS_00059613-exon-scaffold_329-1491911889:723236..723717Clytia hemisphaericaexon
TCONS_00059613-exon-scaffold_329-1491911889:722976..723196TCONS_00059613-exon-scaffold_329-1491911889:722976..723196Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_329supercontigscaffold_329:722976..727802 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
8.35478	5.09923	6.74645	7.95937	2.72083	1.72461	4.95362	3.84228	2.8136	3.91819	2.92244	2.71809	1.6203	1.89274	3.35628	3.88193	5.37038	4.84225	2.13594	2.05986	1.54453	3.57229	4.20999	4.00299	2.33328	3.06131	0.484891	1.64179	3.26335	1.68401
Blast
[Close]
BLAST of TCONS_00059613 vs. Swiss-Prot (Human)
Match: ABHDA (Mycophenolic acid acyl-glucuronide esterase, mitochondrial OS=Homo sapiens GN=ABHD10 PE=1 SV=1)

HSP 1 Score: 131.724 bits (330), Expect = 1.942e-33
Identity = 76/226 (33.63%), Postives = 128/226 (56.64%), Query Frame = 2 
Query: 1136 GIIYVHGYESHSNCRQARFLDKFCTDNGLSFVRFDFYGHGKSSGTLYDLTLSKMKQNFLDVLDKLTQGPQIIIGFSIGGLVSFVGALERPERIHSIISISNAADATYNNFHIHRTDEERQMVKDKGYFMSRVNHV------VCYDLCIDSKNHLLVHDSVKEIALNCPIRFLHGMSDTTIHWXXXXXXXXXXXXQDVKVQLVKTAKHGFNSKNELNILKETLNELV 1795
            GII++ GY S+ N  +A  +++FC   G + +RFD+ G G S G   + TL K +++ L ++D L  GPQI++G S+GG +    A+ RPE++ ++I ++ AAD     F+     E ++ V+ KG +     +       V Y    ++++H L+H     I +NCPIR LHGM D  + W  S+ +A +V+S DV V L K + H    K ++ +L  T+++L+
Sbjct:   77 GIIFIPGYLSYMNGTKALAIEEFCKSLGHACIRFDYSGVGSSDGNSEESTLGKWRKDVLSIIDDLADGPQILVGSSLGGWLMLHAAIARPEKVVALIGVATAADTLVTKFN-QLPVELKKEVEMKGVWSMPSKYSEEGVYNVQYSFIKEAEHHCLLHSP---IPVNCPIRLLHGMKDDIVPWHTSMQVADRVLSTDVDVILRKHSDHRMREKADIQLLVYTIDDLI 298

HSP 2 Score: 101.679 bits (252), Expect = 3.099e-23
Identity = 50/157 (31.85%), Postives = 89/157 (56.69%), Query Frame = 2 
Query:  116 PQIIVCSSMGCWVAILGTLDRLNRIHSIISIASAVDTMYHRFKEFSEDEKNTIKQQGYWIGPKTGSVFG-----YNFLQSCIDNTLMTVKEKQIQIYCPIRILHGMSDDVVPYQVSLKLSKMISSNDIEVHLVKHFDHMMNSDEALALLSKVLDEMV 571
            PQI+V SS+G W+ +   + R  ++ ++I +A+A DT+  +F +   + K  ++ +G W  P   S  G     Y+F++    + L+      I + CPIR+LHGM DD+VP+  S++++  + S D++V L KH DH M     + LL   +D+++
Sbjct:  145 PQILVGSSLGGWLMLHAAIARPEKVVALIGVATAADTLVTKFNQLPVELKKEVEMKGVWSMPSKYSEEGVYNVQYSFIKEAEHHCLL---HSPIPVNCPIRLLHGMKDDIVPWHTSMQVADRVLSTDVDVILRKHSDHRMREKADIQLLVYTIDDLI 298
The following BLAST results are available for this feature:
BLAST of TCONS_00059613 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
ABHDA1.942e-3333.63Mycophenolic acid acyl-glucuronide esterase, mitoc... [more]
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