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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00059556 ID=TCONS_00059556|Name=TCONS_00059556|organism=Clytia hemisphaerica|type=transcript|length=2262bp
NAGCGTCGGCATCCTATTACGcatgataaatattttattgttaattggtg
tacaaaacctcatactttgagataacatcattatttacataatttaggtg
tcatttgttgtcaatttttggggttgatgatttgtcgtttaagtcttcta
aataccatattttgatattacatttcctttacatataatattttcagaaa
cttttgttatgagttgtatgttatgggttgtatgttacgagtgcgttaca
gttttccggtctgtaatttgtatgacctgtgacctgtgacccgtgacctg
tgacccgtgacctgtgacctgtgacctgtgttttacactaaccgactTTT
TAACGTGAATAATCAGAAATGATTATGCTCTTATAACGACTTTGGACGCC
TTTGATTATGACCCCcaacaaaaccttgaaaaataatGAGAATACATTAC
CCTGAGTTAACTTATCCAAAACatcaagaaaattttgtttcattttagaT
AACGTCAAATCATATAAGGTACCACTCGATTTTCCATGACCATAAAAATC
AAATCTTACAAAAGATAAACCATTGTCAGTACAAAATTTGTCTAGAAATC
TAGCTTGTCGGCAATTAGAGTGGGATTCATAACCATGTACATAAATAATC
CCATGTCTGGTAAAGTTTTGGCTTTTTCGCTGGATATAATGGATATAATC
TCCATTTTCCAGTTCTAATCTCCCTTCAATTGACATTCTTAATCAATCAC
GCATTTCATTGATTGTTCAGAttgattcttttttgaaatttaaaatgatt
tcttgatttttctaaaaatgaattaatgATTTTATCATCACTTGTAatcg
ttaaaggttttatttttgcatAAGTGTTTTCGTTTTATATCAAACCCAtt
atttcatatcagggcagtgtctgccttttgttatattatgctgatataag
cgaaaaaatgtttttcttttcctctttctgaccagtcttgctccacatcc
gtgtcaatacAATatgaaaagcttgtgaattaaaaatgatgagaaagcaa
actttatcactcttatttaaaaacaaaacctttcatCAAGGTTCTAAGTT
GAGAAATATGCTGCATATTTCTCTACAGATCACATTGTGTACCCTTTCAT
GATAATTAGGAATAATCAAAGCTTAGAAGGTGCTTGTAAATAAACATCAG
AATCCAAACCAACCTTAACCATTTCGTCTAAAACTTTGCTCAACAATGCC
AAGGCTTCATCAGAGTTCATCATGTGATCAAAATGTTTCACCAAATGAAC
TTCAATATCATTACTGGAAATCATTTTGGAAAGTTTCAATGATACTTGAT
ATGGAACTACATCATCACTCATTCCATGTAAAATACGAATGGGACAATAG
ATTTGAATCTGCTTTTCCTTTACAGTCATTAGCGTATTATCAATACAACT
TTGTAAAAAGTTGTACCCAAATACAGAACCTGTTTTTGGGCCAATCCAAT
ACCCTTGTTGCTTTATGGTGTTTTTCTCGTCTTCTGAAAACTCTTTAAAC
CTAAAGGCAGAGCGTGTTCTTTGTGTTAAACTTTTgaatatatcaatttt
tttacagTGTTAAAAGAAGCTAATAACTTGGAAAATAAGTTTAGGGCAAC
TAGATTCAAAATCTGTGCAAACTAAAAAATATTAATTGCTTTTATATGAG
CTAACCTATGGTACATTGTATCAACAGCACTTGCAATTGAGATTATACTA
TGAATTCGATTTAGTCGATCAAGAGTGCCAAGTATAGCCACCCAACACCC
CATGCTTGAGCAAACAATGATCTGCGGACCTGTTGTTAATTTGTCAAGAA
TGTCAAGAAAATTCTGTTTCCATAATGAAAGTGTTGCATCTACAAGATTT
CCACTTGAATGAGTATGACCAGAATAATCAAATCTCAAACAAGATAAACC
ATTCTCTGCACAATACTGGTCTACATGTTTGGCTTTCTTACAATTCAAGT
CAGACCCGTAACCAGCTAAATATACCACACCAGGTTTTGAAAGATTGATA
GCTTTTCGTTGTTTGTAAAAGATAAAACTGCCATCTTGAGAGAGCAATTT
GCCTTCAACAAtcatttcaaaataacatattatTAATGTATCAATAGTCC
CATTAAAATTAGGAAATATGTTTATTGTTCTAAAACAAAGCTAAATAAAA
TTAATGAAAGGCTATGCATTTAAAAAGTGGCCTACAGACGAAAAAAAAGG
GAAAGCAAGGCA Run BLAST on NCBI transcript from alignment at scaffold_329:725861..728421+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00059556 ID=TCONS_00059556|Name=TCONS_00059556|organism=Clytia hemisphaerica|type=transcript|length=2561bp|location=Sequence derived from alignment at scaffold_329:725861..728421+ (Clytia hemisphaerica)
NAGCGTCGGCATCCTATTACGcatgataaatattttattgttaattggtg
tacaaaacctcatactttgagataacatcattatttacataatttaggtg
tcatttgttgtcaatttttggggttgatgatttgtcgtttaagtcttcta
aataccatattttgatattacatttcctttacatataatattttcagaaa
cttttgttatgagttgtatgttatgggttgtatgttacgagtgcgttaca
gttttccggtctgtaatttgtatgacctgtgacctgtgacccgtgacctg
tgacccgtgacctgtgacctgtgacctgtgttttacactaaccgactTTT
TAACGTGAATAATCAGAAATGATTATGCTCTTATAACGACTTTGGACGCC
TTTGATTATGACCCCcaacaaaaccttgaaaaataatGAGAATACATTAC
CCTGAGTTAACTTATCCAAAACatcaagaaaattttgtttcattttagaT
AACGTCAAATCATATAAGGTACCACTCGATTTTCCATGACCATAAAAATC
AAATCTTACAAAAGATAAACCATTGTCAGTACAAAATTTGTCTAGAAATC
TAGCTTGTCGGCAATTAGAGTGGGATTCATAACCATGTACATAAATAATC
CCATGTCTGGTAAAGTTTTGGCTTTTTCGCTGGATATAATGGATATAATC
TCCATTTTCCAGTTCTAATCTCCCTTCAATTGACATTCTTAATCAATCAC
GCATTTCATTGATTGTTCAGAttgattcttttttgaaatttaaaatgatt
tcttgatttttctaaaaatgaattaatgATTTTATCATCACTTGTAatcg
ttaaaggttttatttttgcatAAGTGTTTTCGTTTTATATCAAACCCAtt
atttcatatcagggcagtgtctgccttttgttatattatgctgatataag
cgaaaaaatgtttttcttttcctctttctgaccagtcttgctccacatcc
gtgtcaatacAATatgaaaagcttgtgaattaaaaatgatgagaaagcaa
actttatcactcttatttaaaaacaaaacctttcatCAAGGTTCTAAGTT
GAGAAATATGCTGCATATTTCTCTACAGATCACATTGTGTACCCTTTCAT
GATAATTAGGAATAATCAAAGCTTAGAAGGTGCTTGTAAATAAACATCAG
AATCCAAACCAACCTTAACCATTTCGTCTAAAACTTTGCTCAACAATGCC
AAGGCTTCATCAGAGTTCATCATGTGATCAAAATGTTTCACCAAATGAAC
TTCAATATCATTACTGGAAATCATTTTGGAAAGTTTCAATGATACTTGAT
ATGGAACTACATCATCACTCATTCCATGTAAAATACGAATGGGACAATAG
ATTTGAATCTGCTTTTCCTTTACAGTCATTAGCGTATTATCAATACAACT
TTGTAAAAAGTTGTACCCAAATACAGAACCTGTTTTTGGGCCAATCCAAT
ACCCTTGTTGCTTTATGGTGTTTTTCTCGTCTTCTGAAAACTCTTTAAAC
CTAAAGGCAGAGCGTGTTCTTTGTGTTAAACTTTTgaatatatcaatttt
tttacagTGTTAAAAGAAGCTAATAACTTGGAAAATAAGTTTAGGGCAAC
TAGATTCAAAATCTGTGCAAACTAAAAAATATTAATTGCTTTTATATGAG
CTAACCTATGGTACATTGTATCAACAGCACTTGCAATTGAGATTATACTA
TGAATTCGATTTAGTCGATCAAGAGTGCCAAGTATAGCCACCCAACACCC
CATGCTTGAGCAAACAATGATCTGCGGACATGGAtagaaaatacactttt
ttggaTGAATTTAAGATATTCAAACAGTAAAAGAGAATTTAAATTTACTG
CATTTAAACGTTAGAAAGAATCTAATTTCTAGCTTCACTTTCTTTATAAT
GTTATACACAccaaaaattataaattgaataaatcttgcaatgggctatt
ccagaaataatttgaatatgggggggtggaggatataacaattttcagtg
atttacctcCCGGACAAAGTaacttttggccccccggacagagcaaaagA
GCCCAATAGATAGCTAAATTTTAATCACCTGTTGTTAATTTGTCAAGAAT
GTCAAGAAAATTCTGTTTCCATAATGAAAGTGTTGCATCTACAAGATTTC
CACTTGAATGAGTATGACCAGAATAATCAAATCTCAAACAAGATAAACCA
TTCTCTGCACAATACTGGTCTACATGTTTGGCTTTCTTACAATTCAAGTC
AGACCCGTAACCAGCTAAATATACCACACCAGGTTTTGAAAGATTGATAG
CTTTTCGTTGTTTGTAAAAGATAAAACTGCCATCTTGAGAGAGCAATTTG
CCTTCAACAAtcatttcaaaataacatattatTAATGTATCAATAGTCCC
ATTAAAATTAGGAAATATGTTTATTGTTCTAAAACAAAGCTAAATAAAAT
TAATGAAAGGCTATGCATTTAAAAAGTGGCCTACAGACGAAAAAAAAGGG
AAAGCAAGGCA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00059556-exon-scaffold_329-1491911889:725861..727689 | TCONS_00059556-exon-scaffold_329-1491911889:725861..727689 | Clytia hemisphaerica | exon |
| TCONS_00059556-exon-scaffold_329-1510915933:725861..727689 | TCONS_00059556-exon-scaffold_329-1510915933:725861..727689 | Clytia hemisphaerica | exon |
| TCONS_00059556-exon-scaffold_329-1575043694:725861..727689 | TCONS_00059556-exon-scaffold_329-1575043694:725861..727689 | Clytia hemisphaerica | exon |
| TCONS_00059556-exon-scaffold_329-1491911889:727989..728421 | TCONS_00059556-exon-scaffold_329-1491911889:727989..728421 | Clytia hemisphaerica | exon |
| TCONS_00059556-exon-scaffold_329-1510915933:727989..728421 | TCONS_00059556-exon-scaffold_329-1510915933:727989..728421 | Clytia hemisphaerica | exon |
| TCONS_00059556-exon-scaffold_329-1575043694:727989..728421 | TCONS_00059556-exon-scaffold_329-1575043694:727989..728421 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_329 | supercontig | scaffold_329:725861..728421 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR029058 | AB_hydrolase |
Blast
BLAST of TCONS_00059556 vs. Swiss-Prot (Human)
Match: ABHDA (Mycophenolic acid acyl-glucuronide esterase, mitochondrial OS=Homo sapiens GN=ABHD10 PE=1 SV=1) HSP 1 Score: 97.8265 bits (242), Expect = 6.894e-22 Identity = 43/114 (37.72%), Postives = 73/114 (64.04%), Query Frame = -1
Query: 1714 KAINLSKPGVVYLAGYGSDLNCKKAKHVDQYCAENGLSCLRFDYSGHTHSSGNLVDATLSLWKQNFLDILDKLTTGPQIIVCSSMGCWVAILGTLDRLNRIHSIISIASAVDTM 2055
K + PG++++ GY S +N KA ++++C G +C+RFDYSG S GN ++TL W+++ L I+D L GPQI+V SS+G W+ + + R ++ ++I +A+A DT+
Sbjct: 69 KKLKGKSPGIIFIPGYLSYMNGTKALAIEEFCKSLGHACIRFDYSGVGSSDGNSEESTLGKWRKDVLSIIDDLADGPQILVGSSLGGWLMLHAAIARPEKVVALIGVATAADTL 182
The following BLAST results are available for this feature:
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