TCONS_00059616 (transcript) - C. hemisphaerica

Overview
NameTCONS_00059616
Unique NameTCONS_00059616
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1300

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00059616 ID=TCONS_00059616|Name=TCONS_00059616|organism=Clytia hemisphaerica|type=transcript|length=1300bp
GAAGGAGCATTGagaagattaatgttgaaatcaccaagaagaataatttg
tttattttctttgttaattttatttaaaaatgattctatgagtttgtttg
ttttttacatCACCACGCATAATTTAAAGTCATTTTTAGTATCACTCAAT
ACCTCTaattttttcaaccaaattataaattgaaatgatttgtATTATTC
tcatttaaaaattgtttgttaAAGATGCTAAGATGATTATTAGAAGGAAG
CTTCTTTTATTAACAAGACAAACGCGTCCAAGTATTTCAAAGGGAATCTT
GAAAATGTCAACTGAAGGAAAGATGAAATATCCAGATGGAAATTATGTAT
TTTATAAGCAAAGAAAGGGCATCCAATCAAAACCAGGAATCATATTTTGC
TCAGGTTATGAGTCTAATTTGAATGGAAATAAAGCTCAATATTTAGACAA
TTATTGTAATGAAAGAAGTTTGTCTTATATGAGATTTGATTATTTCGGAC
ATGCATATTCAAGTGGAAAACTTGTGGAAGCTACACTGTCACAATGGAAG
CAGAATTTTATTGACGTTCTTGACAAGCTTACAACAGgTCCACAAATTGT
AGTTGGTTCTAGTATAGGTGGATGGGTATCCATTCTTGGTGCAATTGAGC
GTCCTGATAGAATACATAGTTTGGTCTCAATTGCAAATGCAACTGATCTC
ATGTCTCACAGGTACAATGACAAATTGGAATCAATAAAACAGGTTGGATG
TTACACTGATCCAAGATATGGCATTACTATAGGATATGAATTCATAATTG
ATACCGTCAAAAACACACTCTtagattcaaaaaataaaatcccTATCCAT
TGTCCAGTACGTTTGCTTCATGGAATGGCTGATGATGTTGTCCCTTatca
aaattctttaaaaattgcAGAAAAAGTTGCAAGTGATGATGTTTTAGTTC
AACTTGTTAAAAATGGAGATCACAGAATGAGTACaatggaaaatttgaca
atgcTGAGCAGAACTCTGGATGAtcttttatgatttttgatattattcaa
ATAATGTCGAGTTGAAGTGAAGTGAAGTTTTGTTTGGAATCAGTTGGAGT
TGATGGTCTAAAAGAATTattcataataaataaatatattgAATTTAATA
AATATATCTAGGTAATTTCTACGTgtgtataaatttttttttgcaaatat
taGTTCAACATAGTGTTTTGTACATATCCCACAGCCAAAAGCAAATTCAG
GTGAACTTTTATAGGTCAAAGATATTTTACCCATGGTGATAACATTTTCC
Run BLAST on NCBI

protein sequence of TCONS_00059616-protein

>TCONS_00059616-protein ID=TCONS_00059616-protein|Name=TCONS_00059616-protein|organism=Clytia hemisphaerica|type=polypeptide|length=266bp
MIIRRKLLLLTRQTRPSISKGILKMSTEGKMKYPDGNYVFYKQRKGIQSK
PGIIFCSGYESNLNGNKAQYLDNYCNERSLSYMRFDYFGHAYSSGKLVEA
TLSQWKQNFIDVLDKLTTGPQIVVGSSIGGWVSILGAIERPDRIHSLVSI
ANATDLMSHRYNDKLESIKQVGCYTDPRYGITIGYEFIIDTVKNTLLDSK
NKIPIHCPVRLLHGMADDVVPYQNSLKIAEKVASDDVLVQLVKNGDHRMS
TMENLTMLSRTLDDLL
Run BLAST on NCBI

transcript from alignment at scaffold_329:729620..731760-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00059616 ID=TCONS_00059616|Name=TCONS_00059616|organism=Clytia hemisphaerica|type=transcript|length=2141bp|location=Sequence derived from alignment at scaffold_329:729620..731760- (Clytia hemisphaerica)
GAAGGAGCATTGAGAAGATTAATGTTGAAATCACCAAGAAGAATAATTTG
TTTATTTTCTTTGTTAATTTTATTTAAAAATGATTCTATGAGTTTGTTTG
TTTTTTACATCACCACGCATAATTTAAAGTCATTTTTAGTATCACTCAAT
ACCTCTAATTTTTTCAACCAAATTATAAATTGAAATGATTTGTATTATTC
TCATTTAAAAATTGTTTGTTAAAGATGCTAAGATGATTATTAGAAGGAAG
CTTCTTTTATTAACAAGACAAACGCGTCCAAGTATTTCAAAGGGAATCTT
GAAAATGTCAACTGAAGGAAAGATGAAATATCCAGATGGAAATTATGTAT
TTTATAAGCAAAGAAAGGGCATCCAATCAAAACCAGGAATCATATTTTGC
TCAGGTTATGAGTCTAATTTGAATGGAAATAAAGCTCAATATTTAGACAA
TTATTGTAATGAAAGAAGTTTGTCTTATATGAGATTTGATTATTTCGGAC
ATGCATATTCAAGTGGAAAACTTGTGGAAGCTACACTGTCACAATGGAAG
CAGAATTTTATTGACGTTCTTGACAAGCTTACAACAGGTAACTATGAAAA
CCTTATTCTATTTCCAGTAGCATTGAGGGGGCAATGAAACGGTAAAACAG
GACAGGGCACCAGCATAGGACTGGTTATAACAGATTTTTTTATGGTGTGA
ATGTGTTTTTCTTTCAGATTTGAACATACTTGAAATTTCTTTGGAATCAT
TCACTTATTATACCAATAAGTTCAAACATTGGAATTGAGTTGTTGCTATT
TATCTACTTTTGAACTACTTAATTGATCTTTTTTGTAAAACAATTGATTT
TTTATTAAATTTAGGTCCACAAATTGTAGTTGGTTCTAGTATAGGTGGAT
GGGTATCCATTCTTGGTGCAATTGAGCGTCCTGATAGAATACATAGTTTG
GTCTCAATTGCAAATGCAACTGATCTCATGTCTCACAGGTATAAATGCTG
CTTTCTTGTTTACTTTGACTATTCTCACTCTTAAGAAGAATAAAACAAAG
TTTAGCTGAGTTTTAACATTAGACTTAAAGACTTGGGATCTTAGGATCTC
AGGATCTAGATGCTCAAAAATGTTCTAAAAAGGCTGAGAATATAGCCTGG
AAGCCACTTAACCCCTCCGAAATCGAAAAATCCAATTAAACAAAGTGAAA
GTAGCGAAACTGCAGTTCTTGTCTAAGATTTAAATTCTGAAAAACATTAA
AATACCCAAAATTGCCAATATTCTTTGGCGCCAATTTTGTAGTAGTAGTA
TATACGCACAGCAAAAGATGTGCCGCCATACACCATAATGCCATATTTTG
GTCAACCCCTCTTACATCATGGGTTGACATGAGGTTAACTTTAGTCACTT
GCCAAGTGAAACTTTTCACCTAGTGGGAATAGAACTGTCAACTCCTACAT
AGTAGCCAATGATGATGAGAACTTACCTACCTTTAGAATTGTTTTTTGAA
TTATTTATTTGTAATGTGGTTTTAACTACAGCGTACATATTTTTTTCATC
AGGTACAATGACAAATTGGAATCAATAAAACAGGTTGGATGTTACACTGA
TCCAAGATATGGCATTACTATAGGATATGAATTCATAATTGATACCGTCA
AAAACACACTCTTAGATTCAAAAAATAAAATCCCTATCCATTGTCCAGTA
CGTTTGCTTCATGGAATGGCTGATGATGTTGTCCCTTATCAAAATTCTTT
AAAAATTGCAGAAAAAGTTGCAAGTGATGATGTTTTAGTTCAACTTGTTA
AAAATGGAGATCACAGAATGAGTACAATGGAAAATTTGACAATGCTGAGC
AGAACTCTGGATGATCTTTTATGATTTTTGATATTATTCAAATAATGTCG
AGTTGAAGTGAAGTGAAGTTTTGTTTGGAATCAGTTGGAGTTGATGGTCT
AAAAGAATTATTCATAATAAATAAATATATTGAATTTAATAAATATATCT
AGGTAATTTCTACGTGTGTATAAATTTTTTTTTGCAAATATTAGTTCAAC
ATAGTGTTTTGTACATATCCCACAGCCAAAAGCAAATTCAGGTGAACTTT
TATAGGTCAAAGATATTTTACCCATGGTGATAACATTTTCC

Coding sequence (CDS) from alignment at scaffold_329:729620..731760-

>TCONS_00059616 ID=TCONS_00059616|Name=TCONS_00059616|organism=Clytia hemisphaerica|type=CDS|length=2403bp|location=Sequence derived from alignment at scaffold_329:729620..731760- (Clytia hemisphaerica)
GTACAATGACAAATTGGAATCAATAAAACAGGTTGGATGTTACACTGATC
CAAGATATGGCATTACTATAGGATATGAATTCATAATTGATACCGTCAAA
AACACACTCTTAGATTCAAAAAATAAAATCCCTATCCATTGTCCAGTACG
TTTGCTTCATGGAATGGCTGATGATGTTGTCCCTTATCAAAATTCTTTAA
AAATTGCAGAAAAAGTTGCAAGTGATGATGTTTTAGTTCAACTTGTTAAA
AATGGAGATCACAGAATGAGTACAATGGAAAATTTGACAATGCTGAGCAG
AACTCTGGATGATCTTTTATGAGTCCACAAATTGTAGTTGGTTCTAGTAT
AGGTGGATGGGTATCCATTCTTGGTGCAATTGAGCGTCCTGATAGAATAC
ATAGTTTGGTCTCAATTGCAAATGCAACTGATCTCATGTCTCACAGATGA
TTATTAGAAGGAAGCTTCTTTTATTAACAAGACAAACGCGTCCAAGTATT
TCAAAGGGAATCTTGAAAATGTCAACTGAAGGAAAGATGAAATATCCAGA
TGGAAATTATGTATTTTATAAGCAAAGAAAGGGCATCCAATCAAAACCAG
GAATCATATTTTGCTCAGGTTATGAGTCTAATTTGAATGGAAATAAAGCT
CAATATTTAGACAATTATTGTAATGAAAGAAGTTTGTCTTATATGAGATT
TGATTATTTCGGACATGCATATTCAAGTGGAAAACTTGTGGAAGCTACAC
TGTCACAATGGAAGCAGAATTTTATTGACGTTCTTGACAAGCTTACAACA
GGTACAATGACAAATTGGAATCAATAAAACAGGTTGGATGTTACACTGAT
CCAAGATATGGCATTACTATAGGATATGAATTCATAATTGATACCGTCAA
AAACACACTCTTAGATTCAAAAAATAAAATCCCTATCCATTGTCCAGTAC
GTTTGCTTCATGGAATGGCTGATGATGTTGTCCCTTATCAAAATTCTTTA
AAAATTGCAGAAAAAGTTGCAAGTGATGATGTTTTAGTTCAACTTGTTAA
AAATGGAGATCACAGAATGAGTACAATGGAAAATTTGACAATGCTGAGCA
GAACTCTGGATGATCTTTTATGAGTCCACAAATTGTAGTTGGTTCTAGTA
TAGGTGGATGGGTATCCATTCTTGGTGCAATTGAGCGTCCTGATAGAATA
CATAGTTTGGTCTCAATTGCAAATGCAACTGATCTCATGTCTCACAGATG
ATTATTAGAAGGAAGCTTCTTTTATTAACAAGACAAACGCGTCCAAGTAT
TTCAAAGGGAATCTTGAAAATGTCAACTGAAGGAAAGATGAAATATCCAG
ATGGAAATTATGTATTTTATAAGCAAAGAAAGGGCATCCAATCAAAACCA
GGAATCATATTTTGCTCAGGTTATGAGTCTAATTTGAATGGAAATAAAGC
TCAATATTTAGACAATTATTGTAATGAAAGAAGTTTGTCTTATATGAGAT
TTGATTATTTCGGACATGCATATTCAAGTGGAAAACTTGTGGAAGCTACA
CTGTCACAATGGAAGCAGAATTTTATTGACGTTCTTGACAAGCTTACAAC
AGGTACAATGACAAATTGGAATCAATAAAACAGGTTGGATGTTACACTGA
TCCAAGATATGGCATTACTATAGGATATGAATTCATAATTGATACCGTCA
AAAACACACTCTTAGATTCAAAAAATAAAATCCCTATCCATTGTCCAGTA
CGTTTGCTTCATGGAATGGCTGATGATGTTGTCCCTTATCAAAATTCTTT
AAAAATTGCAGAAAAAGTTGCAAGTGATGATGTTTTAGTTCAACTTGTTA
AAAATGGAGATCACAGAATGAGTACAATGGAAAATTTGACAATGCTGAGC
AGAACTCTGGATGATCTTTTATGAGTCCACAAATTGTAGTTGGTTCTAGT
ATAGGTGGATGGGTATCCATTCTTGGTGCAATTGAGCGTCCTGATAGAAT
ACATAGTTTGGTCTCAATTGCAAATGCAACTGATCTCATGTCTCACAGAT
GATTATTAGAAGGAAGCTTCTTTTATTAACAAGACAAACGCGTCCAAGTA
TTTCAAAGGGAATCTTGAAAATGTCAACTGAAGGAAAGATGAAATATCCA
GATGGAAATTATGTATTTTATAAGCAAAGAAAGGGCATCCAATCAAAACC
AGGAATCATATTTTGCTCAGGTTATGAGTCTAATTTGAATGGAAATAAAG
CTCAATATTTAGACAATTATTGTAATGAAAGAAGTTTGTCTTATATGAGA
TTTGATTATTTCGGACATGCATATTCAAGTGGAAAACTTGTGGAAGCTAC
ACTGTCACAATGGAAGCAGAATTTTATTGACGTTCTTGACAAGCTTACAA
CAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_037498XLOC_037498Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00059616-proteinTCONS_00059616-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00059616-exon-scaffold_329-1575043694:731174..731760TCONS_00059616-exon-scaffold_329-1575043694:731174..731760Clytia hemisphaericaexon
TCONS_00059616-exon-scaffold_329-1575043694:730773..730896TCONS_00059616-exon-scaffold_329-1575043694:730773..730896Clytia hemisphaericaexon
TCONS_00059616-exon-scaffold_329-1575043694:729620..730208TCONS_00059616-exon-scaffold_329-1575043694:729620..730208Clytia hemisphaericaexon
TCONS_00059616-exon-scaffold_329-1510915933:731174..731760TCONS_00059616-exon-scaffold_329-1510915933:731174..731760Clytia hemisphaericaexon
TCONS_00059616-exon-scaffold_329-1510915933:730773..730896TCONS_00059616-exon-scaffold_329-1510915933:730773..730896Clytia hemisphaericaexon
TCONS_00059616-exon-scaffold_329-1510915933:729620..730208TCONS_00059616-exon-scaffold_329-1510915933:729620..730208Clytia hemisphaericaexon
TCONS_00059616-exon-scaffold_329-1491911889:731174..731760TCONS_00059616-exon-scaffold_329-1491911889:731174..731760Clytia hemisphaericaexon
TCONS_00059616-exon-scaffold_329-1491911889:730773..730896TCONS_00059616-exon-scaffold_329-1491911889:730773..730896Clytia hemisphaericaexon
TCONS_00059616-exon-scaffold_329-1491911889:729620..730208TCONS_00059616-exon-scaffold_329-1491911889:729620..730208Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_329supercontigscaffold_329:729620..731760 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
12.227	12.4623	4.82331	4.07046	4.03448	4.92077	6.43839	5.20561	6.02861	5.29507	6.88564	6.41052	4.99585	3.48129	5.29949	5.35029	6.78641	7.33117	3.80247	2.42358	6.41392	6.48701	10.067	7.35578	5.72585	8.13267	2.14029	2.04624	5.01694	5.81015
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR029058AB_hydrolase
IPR001375Peptidase_S9
Vocabulary: Molecular Function
TermDefinition
GO:0008236serine-type peptidase activity
Vocabulary: Biological Process
TermDefinition
GO:0006508proteolysis
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006508 proteolysis
molecular_function GO:0008236 serine-type peptidase activity
Blast
[Close]
BLAST of TCONS_00059616 vs. Swiss-Prot (Human)
Match: ABHDA (Mycophenolic acid acyl-glucuronide esterase, mitochondrial OS=Homo sapiens GN=ABHD10 PE=1 SV=1)

HSP 1 Score: 173.711 bits (439), Expect = 1.140e-49
Identity = 93/240 (38.75%), Postives = 145/240 (60.42%), Query Frame = 2 
Query:  323 MKYPDGNYVFYKQRKGIQSKPGIIFCSGYESNLNGNKAQYLDNYCNERSLSYMRFDYFGHAYSSGKLVEATLSQWKQNFIDVLDKLTTGPQIVVGSSIGGWVSILGAIERPDRIHSLVSIANATDLMSHRYND-KLESIKQV---GCYTDP----RYGI-TIGYEFIIDTVKNTLLDSKNKIPIHCPVRLLHGMADDVVPYQNSLKIAEKVASDDVLVQLVKNGDHRMSTMENLTMLSRT 1015
            +  PD   + YK+ KG    PGIIF  GY S +NG KA  ++ +C     + +RFDY G   S G   E+TL +W+++ + ++D L  GPQI+VGSS+GGW+ +  AI RP+++ +L+ +A A D +  ++N   +E  K+V   G ++ P      G+  + Y FI +   + LL S   IP++CP+RLLHGM DD+VP+  S+++A++V S DV V L K+ DHRM    ++ +L  T
Sbjct:   58 LNRPDLPNLAYKKLKG--KSPGIIFIPGYLSYMNGTKALAIEEFCKSLGHACIRFDYSGVGSSDGNSEESTLGKWRKDVLSIIDDLADGPQILVGSSLGGWLMLHAAIARPEKVVALIGVATAADTLVTKFNQLPVELKKEVEMKGVWSMPSKYSEEGVYNVQYSFIKEAEHHCLLHS--PIPVNCPIRLLHGMKDDIVPWHTSMQVADRVLSTDVDVILRKHSDHRMREKADIQLLVYT 293
The following BLAST results are available for this feature:
BLAST of TCONS_00059616 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
ABHDA1.140e-4938.75Mycophenolic acid acyl-glucuronide esterase, mitoc... [more]
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