TCONS_00059759 (transcript) - C. hemisphaerica

Overview
NameTCONS_00059759
Unique NameTCONS_00059759
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length696

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00059759 ID=TCONS_00059759|Name=TCONS_00059759|organism=Clytia hemisphaerica|type=transcript|length=696bp
TGAGGCATTTGTATGATTGGACCTGAGTTTGTGAAACTATGCAACTTGCC
AAACTGAGTATGTTGTAAGATCATGGTTCTGGGAACAGAAAAGTTtccat
gaaaaataaatatgttttattatattgttATATTGTAGATGGGCAAAGTA
GTGGTTTCAGTGTGTAAAGAAACTAGTAAAGAACTAGAAGATTTGATCAA
TAATGCTTATTTAGAAAGGGGTATTTTACCTTGGGATAATAAAGAAAATA
CTAGACTAAAGTCAAATTCTGAGCCAATTCTAGAACATATTTTACGTGAT
GAAATACTTGTTGCTCATGTTTATGGCCAGTTAGCTGGTTCTGTCAGATT
GGATACAAAAGATCAACCTGGGATGGTTGGACAACTGGCAGTCAGCTCTG
AGCATCGTAGGTGTGGAGTGGGTGCAAAACTTCAAGAATATTGCCAAGAA
TTCATAAACCCAACAGAGTTTGAACACcagtttaaaacttttttgcatGC
CTGGTTTCAAAGATTGGGATTTGTTGTTGTAAAGGAAACAGCAGTTGAAG
ATCATCCTGTTTATTCTAACCTAggaaaaattttgctgacgagGAAGTTT
GTTGAACTGGAAAAAGAAATATGAGAAACTCATTGAGAAAGTTTTTTCTC
CAGATTCACTTGGTCTAAATCTGATAATTGAATTCATAGATAAGGG
Run BLAST on NCBI

protein sequence of TCONS_00059759-protein

>TCONS_00059759-protein ID=TCONS_00059759-protein|Name=TCONS_00059759-protein|organism=Clytia hemisphaerica|type=polypeptide|length=161bp
MGKVVVSVCKETSKELEDLINNAYLERGILPWDNKENTRLKSNSEPILEH
ILRDEILVAHVYGQLAGSVRLDTKDQPGMVGQLAVSSEHRRCGVGAKLQE
YCQEFINPTEFEHQFKTFLHAWFQRLGFVVVKETAVEDHPVYSNLGKILL
TRKFVELEKEI
Run BLAST on NCBI

transcript from alignment at scaffold_330:64077..64772

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00059759 ID=TCONS_00059759|Name=TCONS_00059759|organism=Clytia hemisphaerica|type=transcript|length=696bp|location=Sequence derived from alignment at scaffold_330:64077..64772 (Clytia hemisphaerica)
CCCTTATCTATGAATTCAATTATCAGATTTAGACCAAGTGAATCTGGAGA AAAAACTTTCTCAATGAGTTTCTCATATTTCTTTTTCCAGTTCAACAAAC TTCctcgtcagcaaaatttttccTAGGTTAGAATAAACAGGATGATCTTC AACTGCTGTTTCCTTTACAACAACAAATCCCAATCTTTGAAACCAGGCat gcaaaaaagttttaaactgGTGTTCAAACTCTGTTGGGTTTATGAATTCT TGGCAATATTCTTGAAGTTTTGCACCCACTCCACACCTACGATGCTCAGA GCTGACTGCCAGTTGTCCAACCATCCCAGGTTGATCTTTTGTATCCAATC TGACAGAACCAGCTAACTGGCCATAAACATGAGCAACAAGTATTTCATCA CGTAAAATATGTTCTAGAATTGGCTCAGAATTTGACTTTAGTCTAGTATT TTCTTTATTATCCCAAGGTAAAATACCCCTTTCTAAATAAGCATTATTGA TCAAATCTTCTAGTTCTTTACTAGTTTCTTTACACACTGAAACCACTACT TTGCCCATCTACAATATaacaatataataaaacatatttatttttcatgg aAACTTTTCTGTTCCCAGAACCATGATCTTACAACATACTCAGTTTGGCA AGTTGCATAGTTTCACAAACTCAGGTCCAATCATACAAATGCCTCA

Coding sequence (CDS) from alignment at scaffold_330:64077..64772

>TCONS_00059759 ID=TCONS_00059759|Name=TCONS_00059759|organism=Clytia hemisphaerica|type=CDS|length=486bp|location=Sequence derived from alignment at scaffold_330:64077..64772 (Clytia hemisphaerica)
TCATATTTCTTTTTCCAGTTCAACAAACTTCctcgtcagcaaaatttttc
cTAGGTTAGAATAAACAGGATGATCTTCAACTGCTGTTTCCTTTACAACA
ACAAATCCCAATCTTTGAAACCAGGCatgcaaaaaagttttaaactgGTG
TTCAAACTCTGTTGGGTTTATGAATTCTTGGCAATATTCTTGAAGTTTTG
CACCCACTCCACACCTACGATGCTCAGAGCTGACTGCCAGTTGTCCAACC
ATCCCAGGTTGATCTTTTGTATCCAATCTGACAGAACCAGCTAACTGGCC
ATAAACATGAGCAACAAGTATTTCATCACGTAAAATATGTTCTAGAATTG
GCTCAGAATTTGACTTTAGTCTAGTATTTTCTTTATTATCCCAAGGTAAA
ATACCCCTTTCTAAATAAGCATTATTGATCAAATCTTCTAGTTCTTTACT
AGTTTCTTTACACACTGAAACCACTACTTTGCCCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_037588XLOC_037588Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00059759-proteinTCONS_00059759-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00059759-exon-scaffold_330-1491911889:64077..64772TCONS_00059759-exon-scaffold_330-1491911889:64077..64772Clytia hemisphaericaexon
TCONS_00059759-exon-scaffold_330-1510915933:64077..64772TCONS_00059759-exon-scaffold_330-1510915933:64077..64772Clytia hemisphaericaexon
TCONS_00059759-exon-scaffold_330-1575043694:64077..64772TCONS_00059759-exon-scaffold_330-1575043694:64077..64772Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_330supercontigscaffold_330:64077..64772 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

min expression (2.85855 tpm) - - (20.0413 tpm) max expressionaGrOo_1GrOo_2FGOo_1FGOo_2EG_1EG_2P1_1P1_2P2_1P2_2P3_1P3_2PoPr_1PoPr_2St_1St_2GO_1GO_2PH_1PH_2BMF_1BMF_2MMF_1MMF_2M_1M_2GEC_1GEC_2GEN_1GEN_2
Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
14.4242 12.7872 9.32069 12.9923 20.0413 15.2935 12.2694 16.6598 7.85778 6.84361 4.28077 5.04581 2.85855 4.07558 7.28049 9.4556 12.1954 12.1075 3.48483 3.64663 6.90264 8.14232 10.0233 8.42923 5.24043 5.86365 4.595 4.37087 5.82173 6.17856
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR000182GNAT_dom
IPR016181Acyl_CoA_acyltransferase
Vocabulary: Molecular Function
TermDefinition
GO:0008080N-acetyltransferase activity
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0008080 N-acetyltransferase activity
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00059759 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
ZOOM
x 1
POSITION
0
100200300400500600Sequence
Match NameE-valueIdentityDescription
back to top