TCONS_00059752 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00059752
Unique Name	TCONS_00059752
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	554

Sequence

The following sequences are available for this feature:

transcript sequence
transcript from alignment at scaffold_330:547358..553038-

transcript sequence

>TCONS_00059752 ID=TCONS_00059752|Name=TCONS_00059752|organism=Clytia hemisphaerica|type=transcript|length=554bp
GCTAGTTTAGAAATTTccattgaattgaaattttcgaaacaaaagaaatt
ggCGCGAATGGCAACTGTGTTGTGGAGCAATCCCTCATCgagaagtgaaa
aaaaaattatcgagCGCGCGCAAGTTAAGTTGAGTAATTTTCCACACTca
tttcagaaaaatttcaacagaGACCTCTAAAACTCAACAAACAAGTACAA
AGGTCTTTCATTCACACAAGTCTCTGTGCAAGTAatttaaaaaaactaac
aaggaaaaacatcaaaatgtgTGGTGTAAAAGATAAAGAAGTAACAGAAG
CCAAAGTCTTAAGTGGAAAAGAGATTTCCAAGAAAATTAAAGAAGGAATG
AAGGAAGAAGTACAACAAATTAAAGAAAAGAATTCTGAATTCACTCCTGG
ACTGACCATTGTGCAGGTCGGCGATCGGGAAGATTCAAATGTTTATGTGC
GGATGAAGATGAAAACCGCCACTGAGGTAAGTATAATGCTCTATTGTTTC
AAGCTGCGGCaggtgttttttcttttcaatctaCAGTAGATTCTTGCTtt
ttcg

Run BLAST on NCBI

transcript from alignment at scaffold_330:547358..553038-

Legend: exon

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00059752 ID=TCONS_00059752|Name=TCONS_00059752|organism=Clytia hemisphaerica|type=transcript|length=5681bp|location=Sequence derived from alignment at scaffold_330:547358..553038- (Clytia hemisphaerica)
GCTAGTTTAGAAATTTCCATTGAATTGAAATTTTCGAAACAAAAGAAATT
GGCGCGAATGGCAACTGTGTTGTGGAGCAATCCCTCATCGAGAAGTGAAA
AAAAAATTATCGAGCGCGCGCAAGTTAAGTTGAGTAATTTTCCACACTCA
TTTCAGAAAAATTTCAACAGAGACCTCTAAAACTCAACAAACAAGTACAA
AGGTCTTTCATTCACACAAGTCTCTGTGCAAGTAGTAAGTAAAATATATT
TTTATAAACTGCGCTTTGTAGTGTCCAACTTTTTGCTATGGAATTGGTTA
TTGTGTTGTGTTGTTATGCGGTTTTACATTTGCATTTGGACTATAAGTTC
TCGGTTGGCAGACGATATCATCCACCACGTTTGCCAACCAAATCAATCAT
GGTCAAAATATATTGAGATTTTAGTGCATTTTAACTGTTTTCAGAATTTA
AAGTTCGGGCGAGAATTGCTATACATTGCAAGCCTTATTATCTGGAGTAA
ATTTTAAAAGCTTCTAAATCCTGAGATCTTAACCAGACGTCCGCGCTCGA
TAGGATCGATCATCGGAACGGCTCGATGACAGATCGATATGTGGTCGATG
GATTACTTAACGTTCCGGATAAGAGATCGATGGAAGATTCAGCCATTAAA
AAGTCTTGAGTATCAATCCTTCGTTGATCCATTATCGAGCTAGTATTTCA
ATCGAGTATACCGATTCGTCATCGATCGTTAATCGATTTGTTAGCGATCA
TAAATCGAGTATGAGTCGATAGGGTCGATAAGATCAATAAAAGATCGATG
ATAGATTGATAAATAATCGATATAACTAATCATACTTACTTCTGGTTACT
TTTGGTTGTCTTCGAGCTTCATGCTCTGGTAAGAAACTTTCTGCTTCACA
CCACAATGCTGCATCCATCAAACCTGAATAAAGGAAGGATGTCGGCAGCT
AAACAGTTTTCATGTCAAGAATGGAGTTAGANNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAACA
AGCGTGCTATCATGTAGTTTTGAACTATGGGTGCGAACACACATCCTTCC
CAATCTTGGGAGTTCCTTGAATTGAAATTTATTGTTGATGTTTGGAACCA
TCATAAGCTTTAAAAAATCTTGAGTATCGATCTCCTATCCGGATATCGTT
AAGTAATCCATCGATCACATATCGATCCGTCATCGAGCCGTTCCGATGAT
CGATCCTATCGAGCGCGGACGTCTGGTCTAAAGCAGTGAAATAAGCACTA
CCGTAACTTGGTCTAATATCGACATCCCTCCTCTAATTCCGACACCCTTT
TTATCAGCTGAAATTGATAGAAAGGTTGAAACTGTTTTTCTTTGCTTAGT
GATGGTCAGAGAGAAATAATCCTTTTTCAATCAGTGATTCAAGCTTTCAT
ATTATTCCTTTCTATAAAGAAGGGTGTCGGAATTTGACGAGGGATGTCGA
TATTAGACCAACTTACGATAAGGTCCTCAGTCTTAAGTCTCATTGTTAAA
ACTTTCCAATAGACAGGCAGTGCTGATGACATCAAAAAAAGTGAAATAAG
TTAAAATTGAGGGACAAATATTGAGTACCCTCAACTGCTCTAACTTTGGG
ACGATTGGTTGAAACATGAGACTGTTGATATCTGGCCTGTATTTTCACTT
ATATACTGCTGTCATAACATGTCACCATAACTTTCACTGATAGCGCACCC
TTTTAAACTTTTTTGTTTTCATTCAAAATGACCGAAAGCCAATTGGAGAA
TTAGAGAACGCTCGTCGCCTAGCCGCCTATCGCCCGATGGGATTAAGACA
TAACGAGTGTGTAACTTACCGCAGGATTGATGTCAAACGCTCCATCGGTT
TGTCACTAATTTGGTCTTCTTCGTTCCAGACATTTGCGTGTTTTCCACTA
CAGATTTTTTTCATATTTCGATTTAGAAGCCTACTCGGTGCGAAAGAGAA
ATCGTGTATTTTTTAATACACCGTTCATTAACTCTAATCAAATGATTTTG
GAGGTTCAGTGTTAAATGGTAGCCAAATTGCTGTCCCATGTTTTGTCAGA
TAGTCCCAAGTTAGAGCAGTTGACGGTACTTATTTATTTGAAATCCTTAA
ATATAGTTTAAAGAGTCAGAATAATTTACTCTGCATGTTTAGAAATCTTT
ACCAGACGTGTCAGAGAAAAATTTACAAATTGATGACGTCACAAGCAAAA
GTGAAAAATTGATGTTGCAAAATTTCAAAGTTTTAAATACCATTCGAAGC
GTTTTCTGATGTATAGATTTTAAATCACATCAGTCTCAATAAGCAGTCTA
AGCCTAACTCCTATCAATTTTCTCAAGTTAGGTTGAGAAATCGGATATAT
ATACATTCGTTTAGATAATGTCTTCTATACAGTTATAACAGTGCCAATTC
GAACAAGACTTATTTGTAGGTAATATCTAATTTCCTGCTGGTTTTACTTG
CATCCTCTGAAGTATGAGCTCATTTCAATTTTATTTGCTATCTTTAGATT
TAAAAAAACTAACAAGGAAAAACATCAAAATGTGTGGTGTAAAAGATAAA
GAAGTAACAGAAGCCAAAGTCTTAAGTGGAAAAGAGATTTCCAAGTGAGT
AACATTATGAAAAGAGAGTGCTTTCATAACAAGAAGAATATAGACGTTCA
TGATTGCTAACTTGTACATTTTAAAAATTTTTATGGCTTAACATTTTGAT
TAATGTTATTATTTCGAAATAGTTTTGCATAAAAATTTTCTCTATATGAT
TGAGGAGCTAAATCTTATCAGCAGTTTAAAGATTTTTTTGAAAATAAGGA
ACATTAGCTAAATAAAATATGTACTTCGGAAATTTTTTTTTTTCTAAAGC
TCTCAGTAAAACTTGAAAAAATTAGGTGAAAAAGGGGTTGATTTGTGAAA
TTTAGTCCATGTGACCTTTTTGTTGCGAAAAAAAGTTCAACACGAAAATT
TTCCCACTTAAAGTAACCACTGCATCTCGCTTCTTTGCAACTTCAGGAAA
ATTAAAGAAGGAATGAAGGAAGAAGTACAACAAATTAAAGAAAAGAATTC
TGAATTCACTCCTGGACTGACCATTGTGCAGGTAAATTTGTCTTCATTTT
GATCGTTTGAATTTTTTTTTGAAAATCTGATGGCTGATGGAAGAGGAAAA
TTTTGATTTTTGTTGAAGTTTATTTGCTTTACCTGGATTTACTTGTGCGT
TCTTTTAGCCTTCATATGGAACGTGCCAGCGTAATTATATATTTATTTAA
ATATCTTTTTGACCACTGAATTGTTTAGTATAAAACGTGAAAAATATTTA
CATATTAAGGGAATGTGGAGGCTAAAATTCTCTGAAAAAATAAGGAATAT
CCAGGCTTTGAGCTACATAAGCTTTAAAGCTTCTTATAAAAAGTGTATTA
TCATAATAAAAACCCATTTTCCTTCAAAAATACAGGAACTGAATTTTCTC
TAAATACAAAATAAAATTTTCATTTGAAAATACGGATGAATAAAAATAAT
ATTTTGGGAAATTGTCTCTGAATAGGACAAATAGTAAATCAGTAAGGGAC
TAAGGGTCAGTGACTCTTACTGTACAATTTCCTTTGTAAGTGGTTTCCAC
ATATAAAACATAGTGTACACTTAAAATGTACCCTTCTCTGACAGATTTCT
GTCTCACTTAGGTACAAAAAGAGCTTTTTCGTTTCCAACTTCAACAAAAT
TTTGCGAAACTTGAAGAATCTTGTCTAATTTGTTGTTAAATTCCATTCGA
CCGTCTGAGACTAAAAGACCACTGCACTTAAAGCTTTGCTTTGACCACTG
CACTTAAGCGTATGAAGCTCACAAACCAAGTTTCCTACTTCAAAGTTAAA
ATCGGGCGAGGAGTCCAAATTGTAAATAAAGCTACTAGCTTATGAAGGTA
GTTTCAAATTTTTACTGTTTTAAATATAAAATGTGGTATAAAAATATAAT
CCACCAGGGTGTGAAATCATTTACAATGTACGTATATTAATTTTTTGGGA
ATAGTGACTAGCAGATTGGATTGACGTCACTAACAATGCTGCATACACAC
GCCAGTACTAACCAAACTGATATGCAAAACGTCATAAGGGTGGTATTATA
AACACTTCATTGTCTCTCGGTATCAGTTTGTTCGGAGGTCGCGCTTTGTG
TCTATATTCTTGAAGTTTATATTTTCAAAATTACTATATCTATTTTAAAA
ATAAAGAGCAAGATTTGAGTCTTTCAAAAGTTACCTTTTTGCAACATAGT
CAAGACGATTGGCGACGTTGTCGTCTCCATAACGACGTCGTGCGTCTTGC
TCGACACCGTTGTCGTTCATCTGAACGCCTAATTAATGGCGCTTATTCGA
GCAGGGCGCTTATGATATTATTTTAACTAAAAGGGGGTGCTTATTCGAGC
GGGGCGCTTTTTCGTGGATTTACAGTAGAGAGTTTCTTTTGGTTATTTAT
TATACCCTTTCCTTACTCTGACCTCTGAGTGTCAGATCGTTTCGCTCGCT
TCTTGTGTTTCTTTATGTTTTGTTTAGGTGTTGATTCTGCGTGTGAAACG
AGTTGTGCTTGGAATAATTGGTTTTAAGCTCTATATTCGTTAGTGGTGTC
CAACTATTTAGATTTTGATAACTATGAACGAACCGCTCAGAACCGCTTGA
ACAAATAAAAGTTGCTGAATGATCACGCACGAGATTGCCTGATTTGGATC
ATAACTCGAACATGCATGAGAAACACAAATTTGTTCGAGTTAAGGAAATT
TCGAGTTATGGAGTAAGGTTTATAAGGCTTGCTAACTGAAGGTACGAGTT
ATAGAGGTTCAAATTAAAGAGACTCGACTGTAGTCTGAAAACATTAAAGC
CTACCCTATCTCATCTCTGTAGGTATTTCGTTCTCGAGTTATAGAATCAA
TTATTCACTTTTTCTTGTCAAAGCGCTCTTATGTCTCGCCAGATCACTGC
CGAAAAAAACTAACAAACTTCTGATATCATTTCATTATCATAGGTCGGCG
ATCGGGAAGATTCAAATGTTTATGTGCGGATGAAGATGAAAACCGCCACT
GAGGTAAGTATAATGCTCTATTGTTTCAAGCTGCGGCAGGTGTTTTTTCT
TTTCAATCTACAGTAGATTCTTGCTTTTTCG

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_037581	XLOC_037581	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:


Feature Name	Unique Name	Species	Type
TCONS_00059752-exon-scaffold_330-1575043694:552805..553038	TCONS_00059752-exon-scaffold_330-1575043694:552805..553038	Clytia hemisphaerica	exon
TCONS_00059752-exon-scaffold_330-1575043694:549895..549991	TCONS_00059752-exon-scaffold_330-1575043694:549895..549991	Clytia hemisphaerica	exon
TCONS_00059752-exon-scaffold_330-1575043694:549408..549492	TCONS_00059752-exon-scaffold_330-1575043694:549408..549492	Clytia hemisphaerica	exon
TCONS_00059752-exon-scaffold_330-1575043694:547358..547495	TCONS_00059752-exon-scaffold_330-1575043694:547358..547495	Clytia hemisphaerica	exon
TCONS_00059752-exon-scaffold_330-1510915933:552805..553038	TCONS_00059752-exon-scaffold_330-1510915933:552805..553038	Clytia hemisphaerica	exon
TCONS_00059752-exon-scaffold_330-1510915933:549895..549991	TCONS_00059752-exon-scaffold_330-1510915933:549895..549991	Clytia hemisphaerica	exon
TCONS_00059752-exon-scaffold_330-1510915933:549408..549492	TCONS_00059752-exon-scaffold_330-1510915933:549408..549492	Clytia hemisphaerica	exon
TCONS_00059752-exon-scaffold_330-1510915933:547358..547495	TCONS_00059752-exon-scaffold_330-1510915933:547358..547495	Clytia hemisphaerica	exon
TCONS_00059752-exon-scaffold_330-1491911889:552805..553038	TCONS_00059752-exon-scaffold_330-1491911889:552805..553038	Clytia hemisphaerica	exon
TCONS_00059752-exon-scaffold_330-1491911889:549895..549991	TCONS_00059752-exon-scaffold_330-1491911889:549895..549991	Clytia hemisphaerica	exon
TCONS_00059752-exon-scaffold_330-1491911889:549408..549492	TCONS_00059752-exon-scaffold_330-1491911889:549408..549492	Clytia hemisphaerica	exon
TCONS_00059752-exon-scaffold_330-1491911889:547358..547495	TCONS_00059752-exon-scaffold_330-1491911889:547358..547495	Clytia hemisphaerica	exon

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_330	supercontig	scaffold_330:547358..553038 -

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
5.65587	6.01676	3.14372	2.7339	148.801	115.283	65.047	69.0652	51.7338	52.0588	31.9847	27.8057	12.7892	9.02023	8.75888	9.02364	36.3598	27.931	6.55889	7.09219	15.6098	17.6042	25.7038	28.2995	19.1006	21.284	73.4641	38.6747	152.602	85.2393

Blast

The following BLAST results are available for this feature:

BLAST of TCONS_00059752 vs. Swiss-Prot (Human)

BLAST of TCONS_00059752 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0


Match Name	E-value	Identity	Description

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TCONS_00059752 (transcript) - C. hemisphaerica