TCONS_00059779 (transcript) - C. hemisphaerica

Overview
NameTCONS_00059779
Unique NameTCONS_00059779
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length251

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00059779 ID=TCONS_00059779|Name=TCONS_00059779|organism=Clytia hemisphaerica|type=transcript|length=251bp
caagaggcactttcgattctggacttaaactttttcggcaaatttgactt
agtttgagaaaaagtgtaacaacaggtaataacgagtaacaacgggtaac
aacgggtaacaagagaCACTTTCGGTACTGGAATTTTTAGGCTCGAATGA
TAACGTTCTAAATGTAATTCATTTTCTGGTTTCATTTCTTGTTTTAGCTT
TCTTTGGTAGAAATCGAAATAATTAGTCATAATTTCTAAAGGGGAGTAAC
A
Run BLAST on NCBI

transcript from alignment at scaffold_331:10971..11330+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00059779 ID=TCONS_00059779|Name=TCONS_00059779|organism=Clytia hemisphaerica|type=transcript|length=360bp|location=Sequence derived from alignment at scaffold_331:10971..11330+ (Clytia hemisphaerica)
caagaggcactttcgattctggacttaaactttttcggcaaatttgactt
agtttgagaaaaagtgtaacaacatgtaataacgagtaacaacgggtaac
aacgagtaacaagaggtaCTTTCGAtactggacttaaactttttcggcaa
attttagttaatttgagaaaaagtgtaacaacaggtaataacgagtaaca
acgggtaacaacgggtaacaagagaCACTTTCGGTACTGGAATTTTTAGG
CTCGAATGATAACGTTCTAAATGTAATTCATTTTCTGGTTTCATTTCTTG
TTTTAGCTTTCTTTGGTAGAAATCGAAATAATTAGTCATAATTTCTAAAG
GGGAGTAACA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_037608XLOC_037608Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00059779-exon-scaffold_331-1491911889:10971..11043TCONS_00059779-exon-scaffold_331-1491911889:10971..11043Clytia hemisphaericaexon
TCONS_00059779-exon-scaffold_331-1510915933:10971..11043TCONS_00059779-exon-scaffold_331-1510915933:10971..11043Clytia hemisphaericaexon
TCONS_00059779-exon-scaffold_331-1575043694:10971..11043TCONS_00059779-exon-scaffold_331-1575043694:10971..11043Clytia hemisphaericaexon
TCONS_00059779-exon-scaffold_331-1491911889:11153..11330TCONS_00059779-exon-scaffold_331-1491911889:11153..11330Clytia hemisphaericaexon
TCONS_00059779-exon-scaffold_331-1510915933:11153..11330TCONS_00059779-exon-scaffold_331-1510915933:11153..11330Clytia hemisphaericaexon
TCONS_00059779-exon-scaffold_331-1575043694:11153..11330TCONS_00059779-exon-scaffold_331-1575043694:11153..11330Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_331supercontigscaffold_331:10971..11330 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.754611	0.735865	0.854409	0	2.03527	1.6083	1.94034	0	0.635896	0.78766	0	1.5077	4.51681	3.64836	1.28548	0.919677	0.566484	0.580628	4.81301	3.35765	0	1.06762	0	0.786613	3.24077	2.16923	0	4.41713	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00059779 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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