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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00059871 ID=TCONS_00059871|Name=TCONS_00059871|organism=Clytia hemisphaerica|type=transcript|length=4721bpRun BLAST on NCBI protein sequence of TCONS_00059871-protein >TCONS_00059871-protein ID=TCONS_00059871-protein|Name=TCONS_00059871-protein|organism=Clytia hemisphaerica|type=polypeptide|length=479bp MEEPREFVIKTNPIEEEYQVFWNKKLGSGISGPVRICQKRSTGEDFAFKCRun BLAST on NCBI transcript from alignment at scaffold_331:36705..50408- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00059871 ID=TCONS_00059871|Name=TCONS_00059871|organism=Clytia hemisphaerica|type=transcript|length=13704bp|location=Sequence derived from alignment at scaffold_331:36705..50408- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_331:36705..50408- >TCONS_00059871 ID=TCONS_00059871|Name=TCONS_00059871|organism=Clytia hemisphaerica|type=CDS|length=20160bp|location=Sequence derived from alignment at scaffold_331:36705..50408- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00059871 vs. Swiss-Prot (Human)
Match: MAPK5 (MAP kinase-activated protein kinase 5 OS=Homo sapiens GN=MAPKAPK5 PE=1 SV=2) HSP 1 Score: 417.542 bits (1072), Expect = 1.558e-130 Identity = 220/462 (47.62%), Postives = 299/462 (64.72%), Query Frame = 3
Query: 2139 VIKTNPIEEEYQVFWNKKLGSGISGPVRICQKRSTGEDFAFKCLLDRSKSRQEAELHWKCTGHPHIVACVDVFQNELVLPGETQPKKCILMVLEMCRGGELFDRIRKKISFTEKEASDITMQVASALFHIHHLNIAHRDLKPENLLIKDKGDKVEVKLTDFGFAKVDKGNLMTPQFTPYYVSPQVLEAQKFHRAQKYGNVPEGTTPYTYDKSCDVWSLGVIIYIMLCGYPPFYSENPRKQLSQGMKRRIMHGEYDFPAPEWSKVSDLAKDVVKRMLVISPNERITVGEMLHHPWVDSGSAPNTVLQSPQQMLDQDAFDHAINTHSVLLADMRIPDRPFALNQNAIEKNPIVMKRKKAQLEGRSKDTDGGSPKMARSNSPVETSD--MKTLRDMIAFLYMPPLDKKNSPXXXXXXXXXXXXXXKHNDGLRRLETVLAQEHWNGHEYTRPVNKNHLAKNLSDIV 3518
IK I EEY + W +KLG+GISGPVR+C K+ST E FA K LLDR K+R E LH C HP+IV ++VF N + P E+ P+ +L+V+EM GGELF RI + FTEK+AS +T Q+A AL H H LNIAHRDLKPENLL KD VKL DFGFAK+D+G+LMTPQFTPYYV+PQVLEAQ+ H+ +K G +P TPYTY+KSCD+WSLGVIIY+MLCGYPPFYS++ + + + M+R+IM G ++FP EWS++S++AKDVV+++L + P ER+T+ +L HPW++S A + VL S Q M+D+ H+ LA+MRI D +L NPI+ KRK L + KD S + + E S+ ++ LRD+IA +P K + +E L + EA K+N + L L WNG +T V++ LA+ + ++
Sbjct: 10 AIKETSILEEYSINWTQKLGAGISGPVRVCVKKSTQERFALKILLDRPKARNEVRLHMMCATHPNIVQIIEVFANSVQFPHESSPRARLLIVMEMMEGGELFHRISQHRHFTEKQASQVTKQIALALRHCHLLNIAHRDLKPENLLFKDNSLDAPVKLCDFGFAKIDQGDLMTPQFTPYYVAPQVLEAQRRHQKEKSGIIPTSPTPYTYNKSCDLWSLGVIIYVMLCGYPPFYSKHHSRTIPKDMRRKIMTGSFEFPEEEWSQISEMAKDVVRKLLKVKPEERLTIEGVLDHPWLNSTEALDNVLPSAQLMMDKAVVAGIQQAHAEQLANMRIQDLKVSLKPLHSVNNPILRKRK--LLGTKPKD----SVYIHDHENGAEDSNVALEKLRDVIAQCILPQAGKGEN--EDEKLNEVMQEAWKYNRECKLLRDTLQSFSWNGRGFTDKVDRLKLAEIVKQVI 463 The following BLAST results are available for this feature:
BLAST of TCONS_00059871 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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