TCONS_00059872 (transcript) - C. hemisphaerica

Overview
NameTCONS_00059872
Unique NameTCONS_00059872
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length868

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00059872 ID=TCONS_00059872|Name=TCONS_00059872|organism=Clytia hemisphaerica|type=transcript|length=868bp
CACAGATTTTTGCTTATATTTCAAAGATGAGGCAAAGTATCAAAAAATGA
CTTATTCCTGACCTTTGACCACCAGTACCAAATCCACAAAAACTCAAGTT
CTAATACCTAGAACGTCTCTTTCTATGGCAATTTGAAGACAGTTTGTCTT
GTTTTCAAAACCACCGTACAGATTTGGTACAATTTACCCACttgtaatct
ttttttttaacttcttttttttaacttaTGGCTTCAAAGAAAAGGAAATT
TTACACAAATAAAATATGGCATTGAAATATTTCTATGATGGAATGTCCCA
ACCTTCGAGGAGTATTTTGTTATTTCTCAAGTGTACAAAAATTCCATTTG
AACCCTGTGTCACACATGTAGCTAAAGGGCACCATTTAACACCTGAATTC
AAAGCTATCAATCCCAGTGGAAAAGTGCCAGCAATCCAAGATGATAAGTT
TAACTTATCTGAAAGTACTGCTATTTTGAGATATCTTTGTGAGTCAAGGA
CAGTAGATGATCATTGGTACCCAAGTGATctacaaaaaagaacaaagctA
AATGAATATTTATCATGGCATCATACAAATCTACGAATGGGTGCAGCTAT
GTACTTCAGGACAACTACTTTAATTCCACTGTTGACTGGAAATCCTCCAA
GAGATggctcaaaatatttgaaaattttcaatgacTCTATGAGAATGATG
GAAGAATATTATttaaaagatacaccatttaTATTGAGTGACCAGGTCTC
CATTGCTGATTTAATGGCTGTTATGGAATTCACACAGCTTGAATCAATGG
GTATACAGAAGCCAGAAATTTTACCCTCCGTACAAGACTGGATACATAGA
TGTCAATTGGAAACTGAT
Run BLAST on NCBI

transcript from alignment at scaffold_331:47425..49670-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00059872 ID=TCONS_00059872|Name=TCONS_00059872|organism=Clytia hemisphaerica|type=transcript|length=2246bp|location=Sequence derived from alignment at scaffold_331:47425..49670- (Clytia hemisphaerica)
CACAGATTTTTGCTTATATTTCAAAGATGAGGCAAAGTATCAAAAAATGA
CTTATTCCTGACCTTTGACCACCAGTACCAAATCCACAAAAACTCAAGTT
CTAATACCTAGAACGTCTCTTTCTATGGCAATTTGAAGACAGTTTGTCTT
GTTTTCAAAACCACCGTACAGATTTGGTACAATTTACCCACTTGTAATCT
TTTTTTTTAACTTCTTTTTTTTAACTTATGGCTTCAAAGAAAAGGAAATT
TTACACAAATAAAATATGGCATTGAAATATTTCTATGATGGAATGTCCCA
ACCTTCGAGGAGTATTTTGTTATTTCTCAAGTGTACAAAAATTCCATTTG
AACCCTGTGTCACACATGTAGCTAAAGGTAATCATTTTCATTTCATTTTT
AATGAAGCTTGTTAAAAGCATTAATTTGACATTAATTTCATATTGAAATA
TATACACAAAGATTTTGTGATTTTCATTTTTGTGATTGATGGGGGAAAGA
GTGCAAAATGAAATGGGTTATATTTTTTGCTGAGTTAAAAATAATATCAA
CGGAATTAGACATGCTTATCTTGTCTTTGTACAGTAACTGTCAATCAAGT
ATGTATGTATGTAACACTGACGTTGTAAAAAAAATACAATACATGAGCAC
TTTGAAAATTATGTGGTTTGCTATTTTAATTTTAGGGCACCATTTAACAC
CTGAATTCAAAGCTATCAATCCCAGTGGAAAAGTGCCAGCAATCCAAGAT
GATAAGTTTAACTTATCTGAAAGGTTTAAATTTTACTATCAAGCTTGAAT
GAAATGCAATAGTCGACTAGTATTTAAAAACAATATTCAAAATCATACAT
TAAAAAAGTATGGTATTGGGTGCGCCATAAAAAAGCTTCTCTCTTTGAAA
CTAATTTTCTCAAAATCTAAGAATTTACAAAAACTATTCTTATTCCATAG
GAAAGAAGACGATAAACTTAAATTTCGATGGGTCCATTAATAAATTCAAT
TCATTAGATCAAAAATATGCTCAAGTGAATAAAAACTTTCAGAAAGTTCC
CGAAAACGTTTAAAATCGACCTATCAAATTTTTATTTTAAAATTGGTTTT
ACATGATTGGAACAGGAATGGTTCTTTTCAAATTTTTAAATTTAGAGAAA
ATTAGTTTTAAAGAGAGAAACTTTTTTGTGGTGTACACATGGTAGTAAAA
TTTTATTAAATTTTTTGTTTTCCTATTATGTTTACTAGATTTAAAAAAAT
CATCATCTTTTTACTTACTCACTAGTACTGCTATTTTGAGATATCTTTGT
GAGTCAAGGACAGTAGATGATCATTGGTACCCAAGTGATCTACAAAAAAG
AACAAAGCTAAATGAATATTTATCATGGCATCATACAAATCTACGAATGG
GTGCAGCTATGTACTTCAGGACAACTGTATGTAAAACGGTCTACTTTTTT
CTGCACACCTGACTTTATACTTAAAGGGTAGGCTTTTGTTGACCATCTGC
ACCTGACTGTTACACTCAAAGAGCAAGCTTTTCTTGCCCACCTGATCCTT
ACAATTGTGTCAGTTATGAATTTAGAATGTTCAAAAGTCTGATAAACAAT
TTCTTATTTCAATGATGATGTAGTTTGTTTTCTAAATGTTTCATTTGTAG
ACTTTAATTCCACTGTTGACTGGAAATCCTCCAAGAGATGGCTCAAAATA
TTTGAAAATTTTCAATGACTCTATGAGAATGATGGAAGAATATTATTTAA
AAGATACACCATTTATATTGAGTGACCAGGTCTCCATTGCTGATTTAATG
GCTGTTATGGAATTCACACAGCTTGAAGTAAGTTAATGAAAAAGATGTTT
CTGTTCTTTGGGTACATTACAAATTTCCTATTTTAAATTTTTTAAGAGTT
TTACATTTCCTTGTAAACTTTTCAATTCAAACATCTGGATGATATAGCAG
CTCAAGGGAAAAAATTCATAACAATAAATAGATATAACGTACTTGGTTGA
TTTTTGAATCAGTAAATGTTACAAAATGATAAGGGCTCAGCTAATAATTA
GGGCATTTTAAAGTTTGATATGAGAACCTTTTATTTCCTCTTTGTCCAGC
TTCATCTTATGAATAAATCTAACTTCTCAAAATCTTTATTAAGCTTAATC
CATTTTTACTTTGCACAAAAGTCAATGGGTATACAGAAGCCAGAAATTTT
ACCCTCCGTACAAGACTGGATACATAGATGTCAATTGGAAACTGAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_037652XLOC_037652Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00059872-exon-scaffold_331-1575043694:49294..49670TCONS_00059872-exon-scaffold_331-1575043694:49294..49670Clytia hemisphaericaexon
TCONS_00059872-exon-scaffold_331-1575043694:48898..48985TCONS_00059872-exon-scaffold_331-1575043694:48898..48985Clytia hemisphaericaexon
TCONS_00059872-exon-scaffold_331-1575043694:48245..48395TCONS_00059872-exon-scaffold_331-1575043694:48245..48395Clytia hemisphaericaexon
TCONS_00059872-exon-scaffold_331-1575043694:47844..48020TCONS_00059872-exon-scaffold_331-1575043694:47844..48020Clytia hemisphaericaexon
TCONS_00059872-exon-scaffold_331-1575043694:47425..47499TCONS_00059872-exon-scaffold_331-1575043694:47425..47499Clytia hemisphaericaexon
TCONS_00059872-exon-scaffold_331-1510915933:49294..49670TCONS_00059872-exon-scaffold_331-1510915933:49294..49670Clytia hemisphaericaexon
TCONS_00059872-exon-scaffold_331-1510915933:48898..48985TCONS_00059872-exon-scaffold_331-1510915933:48898..48985Clytia hemisphaericaexon
TCONS_00059872-exon-scaffold_331-1510915933:48245..48395TCONS_00059872-exon-scaffold_331-1510915933:48245..48395Clytia hemisphaericaexon
TCONS_00059872-exon-scaffold_331-1510915933:47844..48020TCONS_00059872-exon-scaffold_331-1510915933:47844..48020Clytia hemisphaericaexon
TCONS_00059872-exon-scaffold_331-1510915933:47425..47499TCONS_00059872-exon-scaffold_331-1510915933:47425..47499Clytia hemisphaericaexon
TCONS_00059872-exon-scaffold_331-1491911889:49294..49670TCONS_00059872-exon-scaffold_331-1491911889:49294..49670Clytia hemisphaericaexon
TCONS_00059872-exon-scaffold_331-1491911889:48898..48985TCONS_00059872-exon-scaffold_331-1491911889:48898..48985Clytia hemisphaericaexon
TCONS_00059872-exon-scaffold_331-1491911889:48245..48395TCONS_00059872-exon-scaffold_331-1491911889:48245..48395Clytia hemisphaericaexon
TCONS_00059872-exon-scaffold_331-1491911889:47844..48020TCONS_00059872-exon-scaffold_331-1491911889:47844..48020Clytia hemisphaericaexon
TCONS_00059872-exon-scaffold_331-1491911889:47425..47499TCONS_00059872-exon-scaffold_331-1491911889:47425..47499Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_331supercontigscaffold_331:47425..49670 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
59.9949	53.5711	142.712	170.684	72.1986	54.0376	36.5476	37.1155	45.0602	33.45	21.1183	28.7362	9.01511	9.02431	31.9618	34.0186	29.0449	29.3814	3.80228	0.459998	13.5713	11.9799	44.9072	37.7018	6.13826	7.36918	25.457	20.318	40.9947	34.6187
Blast
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BLAST of TCONS_00059872 vs. Swiss-Prot (Human)
Match: GSTT1 (Glutathione S-transferase theta-1 OS=Homo sapiens GN=GSTT1 PE=1 SV=4)

HSP 1 Score: 145.591 bits (366), Expect = 2.874e-41
Identity = 71/199 (35.68%), Postives = 110/199 (55.28%), Query Frame = 2 
Query:  266 MALKYFYDGMSQPSRSILLFLKCTKIPFEPCVTHVAKGHHLTPEFKAINPSGKVPAIQDDKFNLSESTAILRYLCESRTVDDHWYPSDLQKRTKLNEYLSWHHTNLRMGAAMYFRTTTLIPLLTGNP--PRDGSKYLKIFNDSMRMMEEYYLKDTPFILSDQVSIADLMAVMEFTQLESMGIQKPEILPSVQDWIHRCQ 856
            M L+ + D +SQP R++ +F K   IPFE  +  + KG HL+  F  +NP  KVPA++D  F L+ES AIL YL     V D+WYP DLQ R +++EYL+W HT LR           + P+  G P  P+  +  L   + +++++E+ +L++  F+    +S+ADL+A+ E       G Q  E  P +  W  R +
Sbjct:    1 MGLELYLDLLSQPCRAVYIFAKKNDIPFELRIVDLIKGQHLSDAFAQVNPLKKVPALKDGDFTLTESVAILLYLTRKYKVPDYWYPQDLQARARVDEYLAWQHTTLRRSCLRALWHKVMFPVFLGEPVSPQTLAATLAELDVTLQLLEDKFLQNKAFLTGPHISLADLVAITELMHPVGAGCQVFEGRPKLATWRQRVE 199
The following BLAST results are available for this feature:
BLAST of TCONS_00059872 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
GSTT12.874e-4135.68Glutathione S-transferase theta-1 OS=Homo sapiens ... [more]
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