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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00059781 ID=TCONS_00059781|Name=TCONS_00059781|organism=Clytia hemisphaerica|type=transcript|length=1972bp
AAGTGACACAAGTAGGGAATGAcgattttaaagaatttttaagcAGAAAA
AATTGAGCGATTTCTACATTTATTCTTTATTCAATATTGCTCTCTAATTC
TAGAAATTattaatattttgaattttttgttgtaCGAAAGatggcatttt
tttgtccgtatGGTTCAAAGGGTAACAAAGCTCCCAAGCCCATCCCTCAT
GACGCCTATCAACGCAACAGAGAATATGATGACCTCGAAGATAACCTAGA
TAGGCTATCATTAAAAGAAAACAGAACACACCAAACTTCACTTATGATCG
TTGTTGAAGACTATTATCCTTGTTCTGCTCTAGAACTTCCCGTACGTAAA
GGCGAAATCGTACAATATATACAAAGTGAAGGCGTGTGGACGTACGTGCG
TGCACGGAACGGAGCAGACGGTTACATCCCACGCCGTCATTGTTGTTTAG
TGGATCCTGCAGAACTTTCAGATGTTGGTTATTTTTCGGATCACCAAAAT
TGGGAGAGAGTTTCTCCACCGTCAACGGGTAATAGTCGCACGTCATCTTT
CCAACGAGATTCGCCCCGTAGCGTACGTTTCGTAGGGGCAAATATTAACC
GTGATGGAAGCTTTAGCTTTAGTTCCACGACAAGTAGTCTATCAAGTTCA
TCACCAAAAAGCTTAGTAGTAGAGCCTCTTAAACGAAGAAGCGGACTTTA
TACTGATGGCCCACATGTTGATAATAATAGACTGTTCGATCGAACACCAA
AACAACTACGTAAAAACACTGCCCTGATGAATGAAGATATGCGACCAGTT
TGTGGCCGTAAATGCGGTGAGAATTGCGAGCATAAAAATGCACTTAAGAA
AGATAGAACTTTCTCACAAACATCTCAGATTAGTGGGCAATCGAGTAAAA
GTCGAGCTGATTCTGACACCAGACCGCGTTCTACATCTTCAAaccaaaaa
ttaaagaaatcctCGGTTATAAGCGTTTCAactaaaaacataaacaaaag
tgTCTCATTCAATGAGATTAAAACAAAGAGCTCACAACTCAAAGAGATTA
AAACACAGAGCTCACAACTCATCTTTGACGATGTAGACGGTAGACCGAAA
ACACCAAcagaaaaatcatattttgagCTGCCACATACAAAATGTGGTCA
TCCTGAACTGATTATTATTCAAAAACATAATAAGAAAAGTGAAACGGATA
TTTCAGTGGATAGAGGAGATTATGCCGCCATTATTAATGATACGAAATAT
GACGATTGGATGTATATAGTCAATGAAGCTGGCGAGAGAGGCTTTATACC
TAAAAATTGCGCCATCAAACACGAATGCCACGATTGTCAAGAAAACGCGA
CAACTCCTGTCAACGAAAACCCCAACAAACCATTTGGAAGCGAAACACTT
CCATCACCAAGATCACCTACAGATGATAAACCGGTATACACAACAGAAGA
TTTCAAAACAATGAGACAGTTAGTGATCACGAAAGATTATTCTGGTCACA
GTCTTGATGATTTGTATGTTTGTATTGGTGATATTGTTTACATGAGTCCT
GATGAGCAGTCTGGTGACGAGTGGTTGTGGGTTCACTCACTGAAATTGAA
TTCGTCAGGTTATATTCCGATTTGTGTTAGCAAGGATATGATGTTGATCC
AAAAAGCATCTGTATAATTGTTTCATTATTCATGAGAAATTTCATACTTG
GCTTGAGTAGACTCGGGAGAAGAACTAATGTCGCCAGGCGTTTTTTTCCC
TTCACGACCTTGTTTAAAACTTCAACTTGTGAAAGTCTTGAACTTCATTC
CTACTTCTCACAGAAATAACGAATCAAAACTCGAAGGGGATTGACATTCC
CATTTTTTATGGctagggatttgaattccattgttttcaagtcagaaaac
tATTCTTTCAGCGGGGAAAAGATAGGAGAATAATTTTCAACTGGGGCGAT
ATTTGGCCGATTTAGATCCCAC Run BLAST on NCBI transcript from alignment at scaffold_331:117856..121511+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00059781 ID=TCONS_00059781|Name=TCONS_00059781|organism=Clytia hemisphaerica|type=transcript|length=3656bp|location=Sequence derived from alignment at scaffold_331:117856..121511+ (Clytia hemisphaerica)
AAGTGACACAAGTAGGGAATGAcgattttaaagaatttttaagcAGAAAA
AATTGAGCGATTTCTACATTTATTCTTTATTCAATATTGCTCTCTAATTC
TAGAAATTattaatattttgaattttttgttgtaCGAAAGatggcatttt
tttgtccgtatGGTTCAAAGGGTAACAAAGGTGAGGAAagattgttgttt
ttgttttcctcAAGATTCCATGGCAACTCTACGAAAATATCTTCGTCACC
CAAATTCTGGTATCAAGATTTTGGATGATAAAGCTTTATGTGTCGAAGGG
GCCCATGTTAACAAGCATTTAGTTTCTAACATGCACCCATGTATCACCCG
GTTGGGCCCCACATCAACTGGAACATTTGGTCAAATTTCTTTCCCTGTGG
GAGAAATACCcttacaatttcagccccactggaaaattgactttgatttc
atcctctTACGAAATTCAATGTAAAGAAATTGCATTCCAAAACCACCTCA
TACCATCACTTTTGAGCTTGGAACAAAATCGAACAAttccaccagggctg
tgagacaggtgtGTCTTTATTAATTTCGCACAACAAGAGTATTGTGGTAG
CCTTACCAAATCAACTCTTTATTAGAGAtgatatacttttcggtaattac
ttagttctttaaaaataaacCTTAAAAGTATTATTAATAATCATAATTCA
TTTCATTCCATCCTTCAAATCCTATGCAAGTATAtttggcgaaattttcg
acaTTAAGTTGTTTTGTTATATCTTCTTATATCTGTCTAACAGTTACGGG
CTAATTTACCGTCGGGTAGGAATCATAGTCAACCTTTGATTTGTGATATC
CTcaatgaaaatttttccgaccttTTTCGGGAGAGATTTTCTGCATTGAT
TGTCTGATAAGCCAATATATACTGTATTTTTAGAAGCAGCTCCCAAGCCC
ATCCCTCATGACGCCTATCAACGCAACAGAGAATATGATGACCTCGAAGA
TAACCTAGATAGGCTATCATTAAAAGAAAACAGAACACACCAAACTTCAC
TTATGATCGTTGTTGAAGACTATTATCCTTGTTCTGCTCTAGAACTTCCC
GTACGTAAAGGCGAAATCGTACAATATATACAAAGTGAAGGCGTGTGGAC
GTACGTGCGTGCACGGAACGGAGCAGACGGTTACATCCCACGCCGTCATT
GTTGTTTAGTGGATCCTGCAGAACTTTCAGATGTTGGTTATTTTTCGGAT
CACCAAAATTGGGAGAGAGTTTCTCCACCGTCAACGGGTAATAGTCGCAC
GTCATCTTTCCAACGAGATTCGCCCCGTAGCGTACGTTTCGTAGGGGCAA
ATATTAACCGTGATGGAAGCTTTAGCTTTAGTTCCACGACAAGTAGTCTA
TCAAGTTCATCACCAAAAAGCTTAGTAGTAGAGCCTCTTAAACGAAGAAG
CGGACTTTATACTGATGGCCCACATGTTGATAATAATAGACTGTTCGATC
GAACACCAAAACAACTACGTAAAAACACTGCCCTGATGAATGAAGATATG
CGACCAGTTTGTGGCCGTAAATGCGGTGAGAATTGCGAGCATAAAAATGC
ACTTAAGAAAGATAGAACTTTCTCACAAACATCTCAGATTAGTGGGCAAT
CGAGTAAAAGTCGAGCTGATTCTGACACCAGACCGCGTTCTACATCTTCA
AaccaaaaattaaagaaatcctCGGTTATAAGCGTTTCAactaaaaacat
aaacaaaagtgTCTCATTCAATGAGATTAAAACAAAGAGCTCACAACTCA
AAGAGATTAAAACACAGAGCTCACAACTCATCTTTGACGATGTAGACGGT
AGACCGAAAACACCAAcagaaaaatcatattttgagCTGCCACATACAAA
ATGTGGTCATCCTGAACTGATTATTATTCAAAAACATAATAAGAAAAGTG
AAACGGATATTTCAGTGGATAGAGGAGATTATGCCGCCATTATTAATGAT
ACGAAATATGACGATTGGATGTATATAGTCAATGAAGCTGGCGAGAGAGG
CTTTATACCTAAAAATTGCGCCATCAAACACGAATGCCACGGTAAGGTTT
TGTCTCATCCATTCCGACTTTTAAactaaaacacccctgtgtcacaaacc
cgctgggacccgagccccactggaaaatttcgcaaaaattttgtccccgt
tgggaaaataccctaaaaCTTCAGCCCcattgggaaattgactttaattt
catccccattcgaaattcaatgtttaagaattgcactccaaacccatcgc
cactggattttttaaccttggaacaatagaatttctatccctattgggat
ttcaataggagtttttatccctactgataggaaaaaagttccaccggggc
tgtgagacaggggtgtactaaAGGACTAATAGAGGCTGCTGGCATCAACT
AATGGATTTGTTCACCTAAACTCTTTATATACAACCTGGAGTTTTGTAGA
GGTTTACAATTCAGATCAAAggaccaaaaattttctttaattgaGGAGTT
TGAATTATAAAGTCTTTTGTTGATAAAAATGATTGCTATACAGTTAAGTT
ATTTAACAATACTTGAAACCAACCATGTTCGAGTTTAAAAGAGCCTTAAA
TGCATTGTATTTACGCACTATTAGCTTCAAACATTTCACGTGGGACCCAC
GCCCCACAAGCAAATTACGTTAAAATTTCTTCCCCATTAGGAGAATGAAT
AACCTACAATTGCAGCCTCACTGGAAAGTTAACTTTGCTTTCATCCCCCA
TTTGAATTCATTGGAGATAAATTGCATTTCAAAACCATCTCTACTGGATT
TTTTTCGATCTACCTTCGATCTCCTTATGGTGGGCTATGGTGTTAGGGTC
AGTGAGGTTAGTGTGTTCCAATACTACACCTGATGATGCATTTTGTAGTA
AAGGATTCAGATTAGTATAGTAGGTgcttttggcaaatttctacCAGATC
CTCTTATATTTTGTAGATTGTCAAGAAAACGCGACAACTCCTGTCAACGA
AAACCCCAACAAACCATTTGGAAGCGAAACACTTCCATCACCAAGATCAC
CTACAGATGATAAACCGGTATACACAACAGAAGATTTCAAAACAATGAGA
CAGTTAGTGATCACGAAAGATTATTCTGGTCACAGTCTTGATGATTTGTA
TGTTTGTATTGGTGATATTGTTTACATGAGTCCTGATGAGCAGTCTGGTG
ACGAGTGGTTGTGGGTTCACTCACTGAAATTGAATTCGTCAGGTTATATT
CCGATTTGTGTTAGCAAGGATATGATGTTGATCCAAAAAGCATCTGTATA
ATTGTTTCATTATTCATGAGAAATTTCATACTTGGCTTGAGTAGACTCGG
GAGAAGAACTAATGTCGCCAGGCGTTTTTTTCCCTTCACGACCTTGTTTA
AAACTTCAACTTGTGAAAGTCTTGAACTTCATTCCTACTTCTCACAGAAA
TAACGAATCAAAACTCGAAGGGGATTGACATTCCCATTTTTTATGGctag
ggatttgaattccattgttttcaagtcagaaaactATTCTTTCAGCGGGG
AAAAGATAGGAGAATAATTTTCAACTGGGGCGATATTTGGCCGATTTAGA
TCCCAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00059781-exon-scaffold_331-1491911889:117856..118035 | TCONS_00059781-exon-scaffold_331-1491911889:117856..118035 | Clytia hemisphaerica | exon |
| TCONS_00059781-exon-scaffold_331-1510915933:117856..118035 | TCONS_00059781-exon-scaffold_331-1510915933:117856..118035 | Clytia hemisphaerica | exon |
| TCONS_00059781-exon-scaffold_331-1575043694:117856..118035 | TCONS_00059781-exon-scaffold_331-1575043694:117856..118035 | Clytia hemisphaerica | exon |
| TCONS_00059781-exon-scaffold_331-1491911889:118795..119946 | TCONS_00059781-exon-scaffold_331-1491911889:118795..119946 | Clytia hemisphaerica | exon |
| TCONS_00059781-exon-scaffold_331-1510915933:118795..119946 | TCONS_00059781-exon-scaffold_331-1510915933:118795..119946 | Clytia hemisphaerica | exon |
| TCONS_00059781-exon-scaffold_331-1575043694:118795..119946 | TCONS_00059781-exon-scaffold_331-1575043694:118795..119946 | Clytia hemisphaerica | exon |
| TCONS_00059781-exon-scaffold_331-1491911889:120872..121511 | TCONS_00059781-exon-scaffold_331-1491911889:120872..121511 | Clytia hemisphaerica | exon |
| TCONS_00059781-exon-scaffold_331-1510915933:120872..121511 | TCONS_00059781-exon-scaffold_331-1510915933:120872..121511 | Clytia hemisphaerica | exon |
| TCONS_00059781-exon-scaffold_331-1575043694:120872..121511 | TCONS_00059781-exon-scaffold_331-1575043694:120872..121511 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_331 | supercontig | scaffold_331:117856..121511 + |
Blast
The following BLAST results are available for this feature:
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