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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00059782 ID=TCONS_00059782|Name=TCONS_00059782|organism=Clytia hemisphaerica|type=transcript|length=1830bp
AATCGAACAAttccaccagggctgtgagacagAAGCAGCTCCCAAGCCCA
TCCCTCATGACGCCTATCAACGCAACAGAGAATATGATGACCTCGAAGAT
AACCTAGATAGGCTATCATTAAAAGAAAACAGAACACACCAAACTTCACT
TATGATCGTTGTTGAAGACTATTATCCTTGTTCTGCTCTAGAACTTCCCG
TACGTAAAGGCGAAATCGTACAATATATACAAAGTGAAGGCGTGTGGACG
TACGTGCGTGCACGGAACGGAGCAGACGGTTACATCCCACGCCGTCATTG
TTGTTTAGTGGATCCTGCAGAACTTTCAGATGTTGGTTATTTTTCGGATC
ACCAAAATTGGGAGAGAGTTTCTCCACCGTCAACGGGTAATAGTCGCACG
TCATCTTTCCAACGAGATTCGCCCCGTAGCGTACGTTTCGTAGGGGCAAA
TATTAACCGTGATGGAAGCTTTAGCTTTAGTTCCACGACAAGTAGTCTAT
CAAGTTCATCACCAAAAAGCTTAGTAGTAGAGCCTCTTAAACGAAGAAGC
GGACTTTATACTGATGGCCCACATGTTGATAATAATAGACTGTTCGATCG
AACACCAAAACAACTACGTAAAAACACTGCCCTGATGAATGAAGATATGC
GACCAGTTTGTGGCCGTAAATGCGGTGAGAATTGCGAGCATAAAAATGCA
CTTAAGAAAGATAGAACTTTCTCACAAACATCTCAGATTAGTGGGCAATC
GAGTAAAAGTCGAGCTGATTCTGACACCAGACCGCGTTCTACATCTTCAA
accaaaaattaaagaaatcctCGGTTATAAGCGTTTCAactaaaaacata
aacaaaagtgTCTCATTCAATGAGATTAAAACAAAGAGCTCACAACTCAA
AGAGATTAAAACACAGAGCTCACAACTCATCTTTGACGATGTAGACGGTA
GACCGAAAACACCAAcagaaaaatcatattttgagCTGCCACATACAAAA
TGTGGTCATCCTGAACTGATTATTATTCAAAAACATAATAAGAAAAGTGA
AACGGATATTTCAGTGGATAGAGGAGATTATGCCGCCATTATTAATGATA
CGAAATATGACGATTGGATGTATATAGTCAATGAAGCTGGCGAGAGAGGC
TTTATACCTAAAAATTGCGCCATCAAACACGAATGCCACGATTGTCAAGA
AAACGCGACAACTCCTGTCAACGAAAACCCCAACAAACCATTTGGAAGCG
AAACACTTCCATCACCAAGATCACCTACAGATGATAAACCGGTATACACA
ACAGAAGATTTCAAAACAATGAGACAGTTAGTGATCACGAAAGATTATTC
TGGTCACAGTCTTGATGATTTGTATGTTTGTATTGGTGATATTGTTTACA
TGAGTCCTGATGAGCAGTCTGGTGACGAGTGGTTGTGGGTTCACTCACTG
AAATTGAATTCGTCAGGTTATATTCCGATTTGTGTTAGCAAGGATATGAT
GTTGATCCAAAAAGCATCTGTATAATTGTTTCATTATTCATGAGAAATTT
CATACTTGGCTTGAGTAGACTCGGGAGAAGAACTAATGTCGCCAGGCGTT
TTTTTCCCTTCACGACCTTGTTTAAAACTTCAACTTGTGAAAGTCTTGAA
CTTCATTCCTACTTCTCACAGAAATAACGAATCAAAACTCGAAGGGGATT
GACATTCCCATTTTTTATGGctagggatttgaattccattgttttcaagt
cagaaaactATTCTTTCAGCGGGGAAAAGATAGGAGAATAATTTTCAACT
GGGGCGATATTTGGCCGATTTAGATCCCAC Run BLAST on NCBI transcript from alignment at scaffold_331:118382..121511+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00059782 ID=TCONS_00059782|Name=TCONS_00059782|organism=Clytia hemisphaerica|type=transcript|length=3130bp|location=Sequence derived from alignment at scaffold_331:118382..121511+ (Clytia hemisphaerica)
AATCGAACAAttccaccagggctgtgagacaggtgtGTCTTTATTAATTT
CGCACAACAAGAGTATTGTGGTAGCCTTACCAAATCAACTCTTTATTAGA
GAtgatatacttttcggtaattacttagttctttaaaaataaacCTTAAA
AGTATTATTAATAATCATAATTCATTTCATTCCATCCTTCAAATCCTATG
CAAGTATAtttggcgaaattttcgacaTTAAGTTGTTTTGTTATATCTTC
TTATATCTGTCTAACAGTTACGGGCTAATTTACCGTCGGGTAGGAATCAT
AGTCAACCTTTGATTTGTGATATCCTcaatgaaaatttttccgaccttTT
TCGGGAGAGATTTTCTGCATTGATTGTCTGATAAGCCAATATATACTGTA
TTTTTAGAAGCAGCTCCCAAGCCCATCCCTCATGACGCCTATCAACGCAA
CAGAGAATATGATGACCTCGAAGATAACCTAGATAGGCTATCATTAAAAG
AAAACAGAACACACCAAACTTCACTTATGATCGTTGTTGAAGACTATTAT
CCTTGTTCTGCTCTAGAACTTCCCGTACGTAAAGGCGAAATCGTACAATA
TATACAAAGTGAAGGCGTGTGGACGTACGTGCGTGCACGGAACGGAGCAG
ACGGTTACATCCCACGCCGTCATTGTTGTTTAGTGGATCCTGCAGAACTT
TCAGATGTTGGTTATTTTTCGGATCACCAAAATTGGGAGAGAGTTTCTCC
ACCGTCAACGGGTAATAGTCGCACGTCATCTTTCCAACGAGATTCGCCCC
GTAGCGTACGTTTCGTAGGGGCAAATATTAACCGTGATGGAAGCTTTAGC
TTTAGTTCCACGACAAGTAGTCTATCAAGTTCATCACCAAAAAGCTTAGT
AGTAGAGCCTCTTAAACGAAGAAGCGGACTTTATACTGATGGCCCACATG
TTGATAATAATAGACTGTTCGATCGAACACCAAAACAACTACGTAAAAAC
ACTGCCCTGATGAATGAAGATATGCGACCAGTTTGTGGCCGTAAATGCGG
TGAGAATTGCGAGCATAAAAATGCACTTAAGAAAGATAGAACTTTCTCAC
AAACATCTCAGATTAGTGGGCAATCGAGTAAAAGTCGAGCTGATTCTGAC
ACCAGACCGCGTTCTACATCTTCAAaccaaaaattaaagaaatcctCGGT
TATAAGCGTTTCAactaaaaacataaacaaaagtgTCTCATTCAATGAGA
TTAAAACAAAGAGCTCACAACTCAAAGAGATTAAAACACAGAGCTCACAA
CTCATCTTTGACGATGTAGACGGTAGACCGAAAACACCAAcagaaaaatc
atattttgagCTGCCACATACAAAATGTGGTCATCCTGAACTGATTATTA
TTCAAAAACATAATAAGAAAAGTGAAACGGATATTTCAGTGGATAGAGGA
GATTATGCCGCCATTATTAATGATACGAAATATGACGATTGGATGTATAT
AGTCAATGAAGCTGGCGAGAGAGGCTTTATACCTAAAAATTGCGCCATCA
AACACGAATGCCACGGTAAGGTTTTGTCTCATCCATTCCGACTTTTAAac
taaaacacccctgtgtcacaaacccgctgggacccgagccccactggaaa
atttcgcaaaaattttgtccccgttgggaaaataccctaaaaCTTCAGCC
Ccattgggaaattgactttaatttcatccccattcgaaattcaatgttta
agaattgcactccaaacccatcgccactggattttttaaccttggaacaa
tagaatttctatccctattgggatttcaataggagtttttatccctactg
ataggaaaaaagttccaccggggctgtgagacaggggtgtactaaAGGAC
TAATAGAGGCTGCTGGCATCAACTAATGGATTTGTTCACCTAAACTCTTT
ATATACAACCTGGAGTTTTGTAGAGGTTTACAATTCAGATCAAAggacca
aaaattttctttaattgaGGAGTTTGAATTATAAAGTCTTTTGTTGATAA
AAATGATTGCTATACAGTTAAGTTATTTAACAATACTTGAAACCAACCAT
GTTCGAGTTTAAAAGAGCCTTAAATGCATTGTATTTACGCACTATTAGCT
TCAAACATTTCACGTGGGACCCACGCCCCACAAGCAAATTACGTTAAAAT
TTCTTCCCCATTAGGAGAATGAATAACCTACAATTGCAGCCTCACTGGAA
AGTTAACTTTGCTTTCATCCCCCATTTGAATTCATTGGAGATAAATTGCA
TTTCAAAACCATCTCTACTGGATTTTTTTCGATCTACCTTCGATCTCCTT
ATGGTGGGCTATGGTGTTAGGGTCAGTGAGGTTAGTGTGTTCCAATACTA
CACCTGATGATGCATTTTGTAGTAAAGGATTCAGATTAGTATAGTAGGTg
cttttggcaaatttctacCAGATCCTCTTATATTTTGTAGATTGTCAAGA
AAACGCGACAACTCCTGTCAACGAAAACCCCAACAAACCATTTGGAAGCG
AAACACTTCCATCACCAAGATCACCTACAGATGATAAACCGGTATACACA
ACAGAAGATTTCAAAACAATGAGACAGTTAGTGATCACGAAAGATTATTC
TGGTCACAGTCTTGATGATTTGTATGTTTGTATTGGTGATATTGTTTACA
TGAGTCCTGATGAGCAGTCTGGTGACGAGTGGTTGTGGGTTCACTCACTG
AAATTGAATTCGTCAGGTTATATTCCGATTTGTGTTAGCAAGGATATGAT
GTTGATCCAAAAAGCATCTGTATAATTGTTTCATTATTCATGAGAAATTT
CATACTTGGCTTGAGTAGACTCGGGAGAAGAACTAATGTCGCCAGGCGTT
TTTTTCCCTTCACGACCTTGTTTAAAACTTCAACTTGTGAAAGTCTTGAA
CTTCATTCCTACTTCTCACAGAAATAACGAATCAAAACTCGAAGGGGATT
GACATTCCCATTTTTTATGGctagggatttgaattccattgttttcaagt
cagaaaactATTCTTTCAGCGGGGAAAAGATAGGAGAATAATTTTCAACT
GGGGCGATATTTGGCCGATTTAGATCCCAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00059782-exon-scaffold_331-1491911889:118382..118413 | TCONS_00059782-exon-scaffold_331-1491911889:118382..118413 | Clytia hemisphaerica | exon |
| TCONS_00059782-exon-scaffold_331-1510915933:118382..118413 | TCONS_00059782-exon-scaffold_331-1510915933:118382..118413 | Clytia hemisphaerica | exon |
| TCONS_00059782-exon-scaffold_331-1575043694:118382..118413 | TCONS_00059782-exon-scaffold_331-1575043694:118382..118413 | Clytia hemisphaerica | exon |
| TCONS_00059782-exon-scaffold_331-1491911889:118789..119946 | TCONS_00059782-exon-scaffold_331-1491911889:118789..119946 | Clytia hemisphaerica | exon |
| TCONS_00059782-exon-scaffold_331-1510915933:118789..119946 | TCONS_00059782-exon-scaffold_331-1510915933:118789..119946 | Clytia hemisphaerica | exon |
| TCONS_00059782-exon-scaffold_331-1575043694:118789..119946 | TCONS_00059782-exon-scaffold_331-1575043694:118789..119946 | Clytia hemisphaerica | exon |
| TCONS_00059782-exon-scaffold_331-1491911889:120872..121511 | TCONS_00059782-exon-scaffold_331-1491911889:120872..121511 | Clytia hemisphaerica | exon |
| TCONS_00059782-exon-scaffold_331-1510915933:120872..121511 | TCONS_00059782-exon-scaffold_331-1510915933:120872..121511 | Clytia hemisphaerica | exon |
| TCONS_00059782-exon-scaffold_331-1575043694:120872..121511 | TCONS_00059782-exon-scaffold_331-1575043694:120872..121511 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_331 | supercontig | scaffold_331:118382..121511 + |
Blast
The following BLAST results are available for this feature:
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