TCONS_00059878 (transcript) - C. hemisphaerica

Overview
NameTCONS_00059878
Unique NameTCONS_00059878
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1191

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00059878 ID=TCONS_00059878|Name=TCONS_00059878|organism=Clytia hemisphaerica|type=transcript|length=1191bp
TTTTTCTATGCAACCCTAAACTGGCtacaaaattaaagatttccACATAT
ACGTATCAGTTATAACTAACACTTAGGTATTTGGCTTTCAAGAAGGCTGA
TGAATGGGATGTCTATTGCAAAACAACTGTTGGATTTGTTGTAATCTACG
AGGAGAAAATACATTGTTGTGGTAATGACGAGTCAATGGTAAATTTTCTG
AACGACAAACGGGTACTGGAGATTCTAAAAGAATATTGTCCATTTACAGA
TAGGTTAGAAATGAAGAAACCGTTGatccaaaaatgtcaaaaaaggacGG
CTGctacaaaagaaagaaagacaaAAAGGAAAACTGGAGGAAATCACAAC
TCTACCAAAACAAATaatgcaaaaaagaaaaaaaaagaagaaaagaaagt
taaagaaaaaaGCCATACTACTGAAACAGATGATATCTGCTGCAAAGACT
TTTGCTTAAAGCCAGAATTCTTTGAAACCTTTGTTTGCGACAAGTGCCAC
AAGACTTACCACAACCAATGTGTAGACCCTCGAGGACAATCATGTGGATG
TCATTTGATCACTCCTCTGATCGTAGAAcgaaaaaaaagGTTATCATGGT
TGGAGGATCTTGTGGAGTTTAAAAAGAAGTATTCAAAATCTCGCTTTGAA
AACATGAAACGAGTTATATCACAGCGTAATGGTGGATACCATGAGTCCGT
GTCATCGACCATCTTACCATTGTTTAAAGCAAACATTattGGATATTTAG
AAGATTCAATAAAGGAAGTGCTACCTGAAGCTGATTATACATTAATGAGA
CAATTTCTTCTTCCAGAGATGATGGTCCGCACGGTATCCATAGAATGCAA
ATGTCCGATGTTGGCTGTTCGAAGGTTGTTTCTGGAGAGGATTTTTATAA
CGTGATGCACTTTACATAACTAGTAATTCTATTAACAAAATTTTGCGTTT
CAATGAAAACTTCTTTGATAAAAAACAGTGAGGGTGTTCTAGAAAAAAGC
AAGAATAAGATAATTCAATCTTGTCTGGTTCAGATTTCTTAAGAGGTCAC
TCGTTTTCTACGTTTTCGGTACATATTCTTTGTTTTTACCACCAAGTACG
CATTTGCCTTTCACCAGGTTTTCAAAATGCTTATTCTATAAACTTAGACT
ATCACTGGGCTATCACTACCTGGTAAGGTAGTTATTTCCAC
Run BLAST on NCBI

transcript from alignment at scaffold_331:214309..220816-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00059878 ID=TCONS_00059878|Name=TCONS_00059878|organism=Clytia hemisphaerica|type=transcript|length=6508bp|location=Sequence derived from alignment at scaffold_331:214309..220816- (Clytia hemisphaerica)
TTTTTCTATGCAACCCTAAACTGGCTACAAAATTAAAGATTTCCACATAT ACGTATCAGTTATAACTAACACTTAGGTATTTGGCTTTCAAGAAGGTAAA TTGCATTCCTTAATAATTGCCCTACATTCCCAAACCTCGGAATTCAATCT ACTGCAATCAAATTTTAAATCCGTATCTGAAAATTGACAATCGCTAGACT TGGAAATCAATAATTTGTCATTAATGGATCTTCTTATACAGAAAAAAAAA TGTTGGGGCTGACTCAGAAAAGATTTCTTGGCCTCCACTGATTTAAACTT TTCTAATATTCACCAGGCTGATGAATGGGATGTCTATTGCAAAACAACTG TTGGATTTGTTGTAATCTACGAGGAGAAAATACATTGTTGTGGTAAGGTT GAAACTATTTACCTATCATACAGAGTATCTTAACCTGTATTATTATTGCA ATATTTTACCTTTGTTGCACCATAGAACATGCGAGGAAAAGAATTCTATT TCTCGTATGTACTATATTTAATAGTCCAATAGTTCTATCTATAAACTACC TTTTTTCATTTGATTTAAAGAGCTCCACCTTTACTTTAAAAAGGTAATGA CGAGTCAATGGTAAATTTTCTGAACGACAAACGGGTACTGGAGATTCTAA AAGAATATTGTCCATTTACAGGTATTGTTTATGACTATTTTTTTCTTGTT TCAACTTTTTTGAAATAAGTTTTGAGGACACTAATAAGTAATATTGAAAA CTTTAGGCAAAAATATGAAATGATATTGAGAAATTTTACATATAGACAGC CCGGGTTGTATTAAATAGAATCCATTCAGTTGAGTTTAGGATGACGAGAC GTAATCTTATAATATTTCTACTCCTTAGATAGGTTAGAAATGAAGAAACC GTTGATCCAAAAATGTCAAAAAAGGACGGGTAAGAAAAAATGCTTTTGAA ATCTTAGGTAGGGGTCAGAGGTCAGGGTGGGTGTCCATAAAAAATTTGGA AATTTTGATATGACTTTGTAACTTTTAATGAACTAAATTCTAAATGGGTC ACGTGTTTTGGATGGAAAATAAGTGGCTTATTTCCCATTCAAGAGATTTT ACACCCCTTCGTGGATTAAAGCACAATGGTAGACATCCATCTGCGCTATA TGGTGTCACTTGAAATTATGTTTCAGCTGCTACAAAAGAAAGAAAGACAA AAAGGAAAACTGGAGGAAATCACAACTCTACCAAAACAAGTAATGATATT TACTTTTATTACATTGTAAGAAGAGAAACAAGAAAGTAACGGAATATCAT TTTGTAGTTTCTCAATGACGAGCTGTAATCAAAACAACAAGTTTTTACTA TTTCAGATAATGCAAAAAAGAAAAAAAAAGAAGAAAAGAAAGTTAAAGAA AAAAGCCATACTACTGAAACAGGTAAACATTCGCCACAGATACTCTGATA GTTAAAAAGGTATATTACCATAAAATCATGGTGAATATTATTCTTTTATG CTGTGGCTCCTCTGTCTTAAAAAGGTAATACTTTCTGACAGCCTAACCCA TGTTCTTTATTATGATACCTAATTGTTTGTTTTAGATGATATCTGCTGCA AAGACTTTTGCTTAAAGCCAGAATTCTTTGAAACCTTTGTTTGCGACAAG TGCCACAAGACTTACCACAACCAATGTGTAGACCCTCGAGGACAATCATG TGGATGTCATTTGATCACTCCTCTGATCGTAGAACGAAAAAAAAGGTTTA TTATATTGTTTTGATTTGCATTCATCATTTGAAAAATTTAACACTTTTGA TTAGAAAATCACCTGTGATTCGTTAGGAAAGTTTATTTTCCCTATCTGAA ATTTTCGAAGTTGTAATTTATCTTGATTTCAAACAGGTTATCATGGTTGG AGGATCTTGTGGAGTTTAAAAAGAAGTATTCAAAATCTCGCTTTGAAAAC ATGAAACGAGTTGTAAGTTACTGCTCAGAATTTTATTTCTACAATATATC TTGGAATAATATATAACAGAGAAAAATGAATGCTCCTTCTGATATACGAT ACCTCTTTTTGATATCGACTTTTGCATTTGCACACAATAAGAGAAAAGAA TAGGTCGATAGTTTGAAGGGACAATTGGTAAGACCATATTTTTCTTTCAT TACAGATATCACAGCGTAATGGTGGATACCATGAGTCCGTGTCATCGACC ATCTTACCATTGTTTAAAGCAAACATTGTACGTATGACTTTTTTAACTTT AACTTTTAACGACTTTCTAAATTGAATTCTGTTAAGAAAGTTCTGAGAAA CTGATAATTATTGAAACTTTTTCAGGAGTGTTACATCATTAGAGTCTCTT CCGTCTGGGAAATGGCTTTTTTCAAATCTAATACCAATTCCCACAGCACT TTGATTTATTTTTTCGACAGTAGAAAGNCCCTCGAGGACAATCATGTGGA TGTCATTTGATCACTCCTCTGATCGTAGAACGAAAAAAAAGGTTTATTAT ATTGTTTTGATTTGCATTCATCATTTGAAAAATTTAACACTTTTGATTAG AAAATCACCTGTGATTCGTTAGGAAAGTTTATTTTCCCTATCTGAAATTT TCGAAGTTGTAATTTATCTTGATTTCAAACAGGTTATCATGGTTGGAGGA TCTTGTGGAGTTTAAAAAGAAGTATTCAAAATCTCGCTTTGAAAACATGA AACGAGTTGTAAGTTACTGCTCAGAATTTTATTTCTACAATATATCTTGG AATAATATATAACAGAGAAAAATGAATGCTCCTTCTGATATACGATACCT CTTTTTGATATCGACTTTTGCATTTGCACACAATAAGAGAAAAGAATAGG TCGATAGTTTGAAGGGACAATTGGTAAGACCATATTTTTCTTTCATTACA GATATCACAGCGTAATGGTGGATACCATGAGTCCGTGTCATCGACCATCT TACCATTGTTTAAAGCAAACATTGTACGTATGACTTTTTTAACTTTAACT TTTAACGACTTTCTAAATTGAATTCTGTTAAAAAAGTTCTGTGAAACTGA TAATTATTGAAACTTTTTCGGGAGTGTTTCATCATTAGAGTCTCTTCCGT CTGGGAAATGGCTTCTTTTCAAATCTAATACCAATTCCCACAGCACTTTG ATTTATTTTTTCGACAGTAGAAAAAAAAGTTTTTTCACTACATTTTTTAC TTTTACTTCGTTCTGTTATAATTACTATCATACTTCCATAATAAAAGTCA CCAATAATTATCCAGATACTAGATGAGAGACTGTAAGGTCTAGGTTAGAC ATCCGACTTTCTGCCTTCCCTCATTTTTGACAAAGTCGACAGAGAGTTGA CTGTCCAAGGTCAATACGACGCCTTCTTTTGGCGTCAATGCAATGTCTTC TTTCAAAGTTTTTTCAAGCAAAGATTTGGGCTGCCGACTTTCCGTTGATC TTCTGCCGTCTCTCACGTCAAACGAAGGCAGAAATTCGGCCGTCTAAAGT AGGTCTTAGTTAATCTTAAGCTTTTAGCTTTTGAAATGTTTGGTGTAACT TTACATTTTGATTTTTTTAGATTGGATATTTAGAAGATTCAATAAAGGAA GTGCTACCTGAAGCTGATTATACATTAATGAGACAATTTCTTCTTCCAGA GGTAAAAAAGTACTTCGAGTCGTTAACCCCTTGAAACTTACAAGAAATAA TTTAAAGTGAATTTTTGATCAATTTCATTGGTGATCCACCCAATATGATT TAAAAGTTCGCCATCTAAATCTTACTAAAGCCCTTTTTAAATTAGCTGTC AGTAAAATTACAATAAGCCTTTGTTAGATTTTGAATTAGATTGCGATTTT GTGCTCGTTGGATATAATTATGTGAAAAAAAAACTTCAAAAAAATAACCA AAAATGAAGATGAAAAAAGAAAAAAATGCCGTTACCGTCAGTGATGATCC TTTATTTATAGAAGATATCACCACATAGTGTCCTCCCCCCCCCTTTATAA AGGGGGGGGGGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNTTTGAATGGGTGAGGGGGGAAAATGAAAATTTGA ATAGTAAAGGGGGGAAAAAAAGAGGGGGGAAAACATCGATAGTTGGCAAA TTTGGTGGGGGGAGTGTGAAATCACATCAATTTTATCTCAGCAACCAAGG TCAGTCCACATGATATCATGTGATTAGATCATGATTGAAAATTAACCAAT TTTCGTTCTATTTTGTCTAGTATTCCTTTTNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAAATCTCG GAACTCGTAAAATATTTCTCATATTGTACTCGCAACTGTCCGATAACTAT TACTTATCGGCGATCCAAAAAATATCTGCAATCTGATTGGTTAAAAAGAG TACAATATATCTTGTATTTTACATGTAAAATATAAATTGATGAAAAGATG TTGTTGCATTGTAGCGGTAGCAGCAATCTAACGTCACTTTGCTACAAAAG TGCCCTGCGCTTCTTTCCAACACAAAAAGTGCATTTTTGGGTCACCGATA AACCAGTTATCAGACATTTGCTCGTACAATATGGAAATATTTTACTCGTT CCGTATTTTCCGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNGGAGGGAAATGATATTTTCAGAATTTTCTGGG GGGAAAGCAAAAAAGAGGGGGGAAACTAAAAAACTGAAAAGTCATAGGGG GGAAAAAAAGAGGGGGAGATTTAAAAAAATCAAGAATTTGGTGGGGGGAC AAACCCTGGAGGACACTAGTCACCACTATGATAACATGAAAAATAATTAA CTCGATCAAAGACCACACCATGGAGGTGTTTTCGCTTTCTTTGATGATCT TTGGAGTCAATTGGCTCTAACTTTTGATTGAATAGATACATATCTTCTCC CTAAAATACAATTTATTGCAAATCTAATGCAAATGTAGTTCAAATCCAAT TCAATGTGGTTCTACTAACAAAGCATGAAACTTAGATTTCCCTTGTCCTT TTGCATGGTCTTACTTTAGGGTACCTAATAAGCGTCCCCCGCTAGTTAAT TTTTCGAAAAATTTTCACCCCGGACATTCTTATTCCAACCTCCCAGCTTA TTGATTTTTCGGAAGATGTTTTTGAAAGTTTTCTTTTTTGCCCAAATTCT TCTGTATTAACCTCCTTTTCAAAAGTTTTCCTTTATACTTATTTCGATTA TTAGGTTTCGAGATTTTTTTCACCCACCACGCTTACTTTAGGCGTACAAA CTTTCGTGAGCAGAAACTTTCGTGATTTTCACGAATTTTGGCCCTTTTCA CGAAAGTAAATGTATTTAAAAATTCTAGGAAGGACCATTGGCGAAAGTTT ATGCTCGCAAAAAAATCTTGACGAAATAGATAATTTGTAAATCTTCAAAC TTTGAATAAAATGTAACTTTTATGGCACTTTTTAGCCTGCTATAAGACTA ATAAGTCAAAGGACAAATGTTTCAAGCCAATCCAAGAAGTATTTGTCCCT CTAAGCCATTTTTTCTCAATTCTACGTCTTGATTCGCGAAAGTTTAATTT CGCGATTTTTCGTCCTCGCGAAAGTTTCTGCTCGCGAAAATTTGTACGCC TAAAGTATTCCAGCCCCCCCCCCCCGTTTATTAGATACCCGAGAGTAAGT AATTTGCTATTGGCTTTTTTTTACTTGAAATTTTCTGAAGGTATCTTCTA CCACCTGAAGATTTAAGCGAAAAAAAAGTATATAAATGCTGATATCCCAA CTTGCATCTTCAACTTTTTTTTTGTCTAAAATATTTCATTTTATTCGTGT GTATGATAATTAAGACGGGGATTTACACACCTTGCGTCAGTGTTTGCCAC GTCATTGAAATTTACAGGATATTTTGTACTTTTAGATGATGGTCCGCACG GTATCCATAGAATGCAAATGTCCGATGTTGGCTGTTCGAAGGTTGTTTCT GGAGAGGATTTTTATAACGTGATGCACTTTACATAACTAGTAATTCTATT AACAAAATTTTGCGTTTCAATGAAAACTTCTTTGATAAAAAACAGTGAGG GTGTTCTAGAAAAAAGCAAGAATAAGATAATTCAATCTTGTCTGGTTCAG ATTTCTTAAGAGGTCACTCGTTTTCTACGTTTTCGGTACATATTCTTTGT TTTTACCACCAAGTACGCATTTGCCTTTCACCAGGTTTTCAAAATGCTTA TTCTATAAACTTAGACTATCACTGGGCTATCACTACCTGGTAAGGTAGTT ATTTCCAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_037658XLOC_037658Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00059878-exon-scaffold_331-1575043694:220722..220816TCONS_00059878-exon-scaffold_331-1575043694:220722..220816Clytia hemisphaericaexon
TCONS_00059878-exon-scaffold_331-1575043694:220425..220500TCONS_00059878-exon-scaffold_331-1575043694:220425..220500Clytia hemisphaericaexon
TCONS_00059878-exon-scaffold_331-1575043694:220146..220223TCONS_00059878-exon-scaffold_331-1575043694:220146..220223Clytia hemisphaericaexon
TCONS_00059878-exon-scaffold_331-1575043694:219888..219938TCONS_00059878-exon-scaffold_331-1575043694:219888..219938Clytia hemisphaericaexon
TCONS_00059878-exon-scaffold_331-1575043694:219578..219640TCONS_00059878-exon-scaffold_331-1575043694:219578..219640Clytia hemisphaericaexon
TCONS_00059878-exon-scaffold_331-1575043694:219395..219460TCONS_00059878-exon-scaffold_331-1575043694:219395..219460Clytia hemisphaericaexon
TCONS_00059878-exon-scaffold_331-1575043694:219072..219231TCONS_00059878-exon-scaffold_331-1575043694:219072..219231Clytia hemisphaericaexon
TCONS_00059878-exon-scaffold_331-1575043694:218855..218930TCONS_00059878-exon-scaffold_331-1575043694:218855..218930Clytia hemisphaericaexon
TCONS_00059878-exon-scaffold_331-1575043694:218590..218661TCONS_00059878-exon-scaffold_331-1575043694:218590..218661Clytia hemisphaericaexon
TCONS_00059878-exon-scaffold_331-1575043694:217166..217246TCONS_00059878-exon-scaffold_331-1575043694:217166..217246Clytia hemisphaericaexon
TCONS_00059878-exon-scaffold_331-1575043694:214309..214681TCONS_00059878-exon-scaffold_331-1575043694:214309..214681Clytia hemisphaericaexon
TCONS_00059878-exon-scaffold_331-1510915933:220722..220816TCONS_00059878-exon-scaffold_331-1510915933:220722..220816Clytia hemisphaericaexon
TCONS_00059878-exon-scaffold_331-1510915933:220425..220500TCONS_00059878-exon-scaffold_331-1510915933:220425..220500Clytia hemisphaericaexon
TCONS_00059878-exon-scaffold_331-1510915933:220146..220223TCONS_00059878-exon-scaffold_331-1510915933:220146..220223Clytia hemisphaericaexon
TCONS_00059878-exon-scaffold_331-1510915933:219888..219938TCONS_00059878-exon-scaffold_331-1510915933:219888..219938Clytia hemisphaericaexon
TCONS_00059878-exon-scaffold_331-1510915933:219578..219640TCONS_00059878-exon-scaffold_331-1510915933:219578..219640Clytia hemisphaericaexon
TCONS_00059878-exon-scaffold_331-1510915933:219395..219460TCONS_00059878-exon-scaffold_331-1510915933:219395..219460Clytia hemisphaericaexon
TCONS_00059878-exon-scaffold_331-1510915933:219072..219231TCONS_00059878-exon-scaffold_331-1510915933:219072..219231Clytia hemisphaericaexon
TCONS_00059878-exon-scaffold_331-1510915933:218855..218930TCONS_00059878-exon-scaffold_331-1510915933:218855..218930Clytia hemisphaericaexon
TCONS_00059878-exon-scaffold_331-1510915933:218590..218661TCONS_00059878-exon-scaffold_331-1510915933:218590..218661Clytia hemisphaericaexon
TCONS_00059878-exon-scaffold_331-1510915933:217166..217246TCONS_00059878-exon-scaffold_331-1510915933:217166..217246Clytia hemisphaericaexon
TCONS_00059878-exon-scaffold_331-1510915933:214309..214681TCONS_00059878-exon-scaffold_331-1510915933:214309..214681Clytia hemisphaericaexon
TCONS_00059878-exon-scaffold_331-1491911889:220722..220816TCONS_00059878-exon-scaffold_331-1491911889:220722..220816Clytia hemisphaericaexon
TCONS_00059878-exon-scaffold_331-1491911889:220425..220500TCONS_00059878-exon-scaffold_331-1491911889:220425..220500Clytia hemisphaericaexon
TCONS_00059878-exon-scaffold_331-1491911889:220146..220223TCONS_00059878-exon-scaffold_331-1491911889:220146..220223Clytia hemisphaericaexon
TCONS_00059878-exon-scaffold_331-1491911889:219888..219938TCONS_00059878-exon-scaffold_331-1491911889:219888..219938Clytia hemisphaericaexon
TCONS_00059878-exon-scaffold_331-1491911889:219578..219640TCONS_00059878-exon-scaffold_331-1491911889:219578..219640Clytia hemisphaericaexon
TCONS_00059878-exon-scaffold_331-1491911889:219395..219460TCONS_00059878-exon-scaffold_331-1491911889:219395..219460Clytia hemisphaericaexon
TCONS_00059878-exon-scaffold_331-1491911889:219072..219231TCONS_00059878-exon-scaffold_331-1491911889:219072..219231Clytia hemisphaericaexon
TCONS_00059878-exon-scaffold_331-1491911889:218855..218930TCONS_00059878-exon-scaffold_331-1491911889:218855..218930Clytia hemisphaericaexon
TCONS_00059878-exon-scaffold_331-1491911889:218590..218661TCONS_00059878-exon-scaffold_331-1491911889:218590..218661Clytia hemisphaericaexon
TCONS_00059878-exon-scaffold_331-1491911889:217166..217246TCONS_00059878-exon-scaffold_331-1491911889:217166..217246Clytia hemisphaericaexon
TCONS_00059878-exon-scaffold_331-1491911889:214309..214681TCONS_00059878-exon-scaffold_331-1491911889:214309..214681Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_331supercontigscaffold_331:214309..220816 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0 0 0 0 0 0.000524256 0 0 0 0 0 0.341763 0.265086 0.63119 0 0 0 0 0 0 0 0 0 0 5.51745 0.312002 0 0 0 0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00059878 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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