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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00059787 ID=TCONS_00059787|Name=TCONS_00059787|organism=Clytia hemisphaerica|type=transcript|length=4125bpRun BLAST on NCBI protein sequence of TCONS_00059787-protein >TCONS_00059787-protein ID=TCONS_00059787-protein|Name=TCONS_00059787-protein|organism=Clytia hemisphaerica|type=polypeptide|length=1061bp MIWTSILICFTISLVTANDPPTVGWAGPSYTTRKEGESFEFFCNSGSKPTRun BLAST on NCBI transcript from alignment at scaffold_331:253267..265985+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00059787 ID=TCONS_00059787|Name=TCONS_00059787|organism=Clytia hemisphaerica|type=transcript|length=12719bp|location=Sequence derived from alignment at scaffold_331:253267..265985+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_331:253267..265985+ >TCONS_00059787 ID=TCONS_00059787|Name=TCONS_00059787|organism=Clytia hemisphaerica|type=CDS|length=28674bp|location=Sequence derived from alignment at scaffold_331:253267..265985+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00059787 vs. Swiss-Prot (Human)
Match: HMCN1 (Hemicentin-1 OS=Homo sapiens GN=HMCN1 PE=1 SV=2) HSP 1 Score: 87.0409 bits (214), Expect = 7.924e-17 Identity = 138/614 (22.48%), Postives = 245/614 (39.90%), Query Frame = 3
Query: 252 PPTVGWAGPSYTTRKEGESFEFFCNSGSKPTPKVTWIKDGAE-LDTSQSTIYIPDGNKLKIPKVTSEVAGKYRCKVENEFGSNILGWDLNLIV------PYMEDVFAYTPRNNFF---YASKRQAWANCAAPKGSPRPLITFINGTSGKPINTDEARIETRMFSRGDMLLYQMLVKDATDYDTHTKWACKASSAAGDKYSYFKVEFYKAPAAPSNIKFTDRLEGFILNWDFIRNDISHYHFRLTTSDNKVLEYKMKETTEHEIYITKYEIRNLERGKTYKVEMRAVDKDGQIGEWS-NPIN-------YKTVTEIAP--YLDYPLPLKTPVAEGVKHIVKCQIRGEPIPKIVWTLNGKQISESNSDYEMVNDKGELILVKPVRDRLNGIYQCQGTNKLG--------------SIKNNPTTLDVEWIEKKFEFSPRNHTFYRGLRFIRISCRPPKSSPAADVDWLWNDRKINPFTISNFAKVVYNDPLGVLYHALEIRKPTSALAGNYSCVAKNVGGTQFANLTVKEILPKKPLA---ISDPKSLTQLFADKEESFKLSCHFLADPTPSIVWYHNKQKINMENNPYFSVTDDGKGLSTLTLKSLNKIHHGDYYC 1982
PP + GP + + G+ + CN+ P P +TW K G+ L + + PDG L I + T AG Y C +NI G D I P +ED+ P N F A++R + C A KG+P+P I +++ +G+ + E I + G +L ++ T YD + ++ C A + AG + ++ + P IK ++ + N + N +++ + + + ++ + E I+ + GK K+ RA +D G +S IN Y + + P + P + V ++CQ++G P P I W +GK + + + E++ D+G+++ +K R G YQC +N G SIK T D+ + I++ C + P + W + + I + ++ +Y D L I + + + Y+C NV GT + V +P P+ ++ P + + A S L C +P+P + W K + ++ N + GK L + S +I G Y C
Sbjct: 1170 PPKI-QRGPKHLKVQVGQRVDIPCNAQGTPLPVITWSKGGSTMLVDGEHHVSNPDGT-LSIDQATPSDAGIYTC-----VATNIAGTDETEITLHVQEPPTVEDL--EPPYNTTFQERVANQRIEFP-CPA-KGTPKPTIKWLH--NGRELTGREPGIS--ILEDGTLL----VIASVTPYD-NGEYICVAVNEAGTTERKYNLKVHVPPV----IKDKEQ----VTNVSVLLNQLTNLFCEVEGTPSPIIMWYKDNVQVTE----SSTIQTVNNGKILKL-FRATPEDA--GRYSCKAINIAGTSQKYFNIDVLVPPTIIGTNFPNEVSVVLNRDVALECQVKGTPFPDIHWFKDGKPLFLGDPNVELL-DRGQVLHLKNARRNDKGRYQCTVSNAAGKQAKDIKLTIYIPPSIKGGNVTTDISVLINS---------------LIKLECE-TRGLPMPAITWYKDGQP-----IMSSSQALYIDK----GQYLHIPRAQVSDSATYTCHVANVAGTAEKSFHVDVYVP--PMIEGNLATPLNKQVVIA---HSLTLECKAAGNPSPILTWL--KDGVPVKANDNIRIEAGGKKLEIM---SAQEIDRGQYIC 1712 The following BLAST results are available for this feature:
BLAST of TCONS_00059787 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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