TCONS_00059794 (transcript) - C. hemisphaerica

Overview
NameTCONS_00059794
Unique NameTCONS_00059794
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1079

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00059794 ID=TCONS_00059794|Name=TCONS_00059794|organism=Clytia hemisphaerica|type=transcript|length=1079bp
CTCACCTTTTGATATttcagcaaaacaaaaaaaaatattacataaaaata
tttcgcTTCAAAAATTCCACAAATACCTAAATGGAATGAGGAAGAAGAAC
CAGATtgatatgacgtcattattaGAGAAATTAAATGTTAGAAAGATCAG
TCACTAAATTAACGTGGACAAGCCATCATTCAGTCATTTGGTAAGCAACC
CAGTCtatattcaataaaatttatgtcacgaataaagaaaatcaatctaC
GGTACTCGTTGTACCACCATTAAAACTACTGAGCAATCTCTGCCTTGTTG
ACAAATACGATCTGACACTTCCAGAAGTCTGTTTTTTCCTCGGTTTGGCG
ATCGAGAAGAAAGTATCGAAAACAGATTTCCTGAATTTCCGTTGTAATTT
TGCATAAATAATGATATTGTAAATTGTGTTACAACACATCATGGCTGTTA
AAATACTGTTCACTTTTCGTAAACTTGCAGTTAATATGATACCTTTGCCA
GGTGTCATCCACGTCAACGTATACACAATATGTAATAGCTCCCTTGGGAA
TACTGATACTACAAACGCTGTCGCCACCAGTAAAAGCATTTTCAAGACTC
TATGATTCTCCTTTAAACGAGCTTGATTCTGTAAATGTGGTAGATTCTGG
CCAACATTTTTCTTTATGTTTAGTTCTCGTTTAATCACAATAAAAGTTAC
AAGGAAAACAGTCAAATATAATGAATCTCTAATCAGCATTATTGAAATGA
CAGGATAAGCATAACCATGAACCTTGACAGATGGAACATTACATATTTTT
GATCCTCCCGGCGAAACCTTTATCTTTGCGTAAATCAAATACGGTAATTC
CATCACAATAGACAAAACAATAATAAACAGTACAATCATATTAATCCGTT
TTTTAGGAATCGGATTACGGAACGGGAACTTCAGCGCGATACATCGATCA
ATATTTATCACCATGATGATCCCGAGAGAAATAGATGTAAAAGAACGCCA
TGTTAGTGGTAAAAGTTTACATCCAACCAAACCGAAATCCCAAGTTGAAA
ATTGGTTTACTGTCAAATATATAAAGAGG
Run BLAST on NCBI

transcript from alignment at scaffold_331:420339..421669+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00059794 ID=TCONS_00059794|Name=TCONS_00059794|organism=Clytia hemisphaerica|type=transcript|length=1331bp|location=Sequence derived from alignment at scaffold_331:420339..421669+ (Clytia hemisphaerica)
CTCACCTTTTGATATttcagcaaaacaaaaaaaaatattacataaaaata tttcgcTTCAAAAATTCCACAAATACCTAAATGGAATGAGGAAGAAGAAC CAGATtgatatgacgtcattattaGTAAGTGTGTGTATTTTCGATTCTCG CTTTTATTTCTCAGAAAAGTCGAGGACTTCAGGGTAATTAAACTAGGTAG TTGCTAATGAACTTTGGATTCTTTTCTCTTgtcattttaaaatctatttA CAATATCATATCATTTTATTTGCTTTCCTACATCTCAACTGCATTACCAA TTTGAAAAAAGGCAGGCGCAATCAATTAACAATTAACCCACAGTTACTGA AAAAATCATGCTAATTATCTTTTCAGGAGAAATTAAATGTTAGAAAGATC AGTCACTAAATTAACGTGGACAAGCCATCATTCAGTCATTTGGTAAGCAA CCCAGTCtatattcaataaaatttatgtcacgaataaagaaaatcaatct aCGGTACTCGTTGTACCACCATTAAAACTACTGAGCAATCTCTGCCTTGT TGACAAATACGATCTGACACTTCCAGAAGTCTGTTTTTTCCTCGGTTTGG CGATCGAGAAGAAAGTATCGAAAACAGATTTCCTGAATTTCCGTTGTAAT TTTGCATAAATAATGATATTGTAAATTGTGTTACAACACATCATGGCTGT TAAAATACTGTTCACTTTTCGTAAACTTGCAGTTAATATGATACCTTTGC CAGGTGTCATCCACGTCAACGTATACACAATATGTAATAGCTCCCTTGGG AATACTGATACTACAAACGCTGTCGCCACCAGTAAAAGCATTTTCAAGAC TCTATGATTCTCCTTTAAACGAGCTTGATTCTGTAAATGTGGTAGATTCT GGCCAACATTTTTCTTTATGTTTAGTTCTCGTTTAATCACAATAAAAGTT ACAAGGAAAACAGTCAAATATAATGAATCTCTAATCAGCATTATTGAAAT GACAGGATAAGCATAACCATGAACCTTGACAGATGGAACATTACATATTT TTGATCCTCCCGGCGAAACCTTTATCTTTGCGTAAATCAAATACGGTAAT TCCATCACAATAGACAAAACAATAATAAACAGTACAATCATATTAATCCG TTTTTTAGGAATCGGATTACGGAACGGGAACTTCAGCGCGATACATCGAT CAATATTTATCACCATGATGATCCCGAGAGAAATAGATGTAAAAGAACGC CATGTTAGTGGTAAAAGTTTACATCCAACCAAACCGAAATCCCAAGTTGA AAATTGGTTTACTGTCAAATATATAAAGAGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_037618XLOC_037618Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00059794-exon-scaffold_331-1491911889:420339..420462TCONS_00059794-exon-scaffold_331-1491911889:420339..420462Clytia hemisphaericaexon
TCONS_00059794-exon-scaffold_331-1510915933:420339..420462TCONS_00059794-exon-scaffold_331-1510915933:420339..420462Clytia hemisphaericaexon
TCONS_00059794-exon-scaffold_331-1575043694:420339..420462TCONS_00059794-exon-scaffold_331-1575043694:420339..420462Clytia hemisphaericaexon
TCONS_00059794-exon-scaffold_331-1491911889:420715..421669TCONS_00059794-exon-scaffold_331-1491911889:420715..421669Clytia hemisphaericaexon
TCONS_00059794-exon-scaffold_331-1510915933:420715..421669TCONS_00059794-exon-scaffold_331-1510915933:420715..421669Clytia hemisphaericaexon
TCONS_00059794-exon-scaffold_331-1575043694:420715..421669TCONS_00059794-exon-scaffold_331-1575043694:420715..421669Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_331supercontigscaffold_331:420339..421669 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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min expression (0 tpm) - - (5.74261 tpm) max expressionaGrOo_1GrOo_2FGOo_1FGOo_2EG_1EG_2P1_1P1_2P2_1P2_2P3_1P3_2PoPr_1PoPr_2St_1St_2GO_1GO_2PH_1PH_2BMF_1BMF_2MMF_1MMF_2M_1M_2GEC_1GEC_2GEN_1GEN_2
Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0 0 0.0461721 0.135517 0.11918 0.0941778 0.0568108 0.319113 0.106971 0.322864 0.134305 0.117716 3.47147 2.41107 5.74261 2.58499 2.20411 2.69842 1.40919 2.3588 2.60221 2.13468 3.60024 2.89057 1.66374 1.8756 0.0605906 0 0 0.0922287
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR000276GPCR_Rhodpsn
IPR017452GPCR_Rhodpsn_7TM
Vocabulary: Biological Process
TermDefinition
GO:0007186G-protein coupled receptor signaling pathway
Vocabulary: Molecular Function
TermDefinition
GO:0004930G-protein coupled receptor activity
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0007186 G-protein coupled receptor signaling pathway
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0004930 G-protein coupled receptor activity
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00059794 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
ZOOM
x 1
POSITION
0
1002003004005006007008009001000Sequence
Match NameE-valueIdentityDescription
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