Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00059794 ID=TCONS_00059794|Name=TCONS_00059794|organism=Clytia hemisphaerica|type=transcript|length=1079bp CTCACCTTTTGATATttcagcaaaacaaaaaaaaatattacataaaaata tttcgcTTCAAAAATTCCACAAATACCTAAATGGAATGAGGAAGAAGAAC CAGATtgatatgacgtcattattaGAGAAATTAAATGTTAGAAAGATCAG TCACTAAATTAACGTGGACAAGCCATCATTCAGTCATTTGGTAAGCAACC CAGTCtatattcaataaaatttatgtcacgaataaagaaaatcaatctaC GGTACTCGTTGTACCACCATTAAAACTACTGAGCAATCTCTGCCTTGTTG ACAAATACGATCTGACACTTCCAGAAGTCTGTTTTTTCCTCGGTTTGGCG ATCGAGAAGAAAGTATCGAAAACAGATTTCCTGAATTTCCGTTGTAATTT TGCATAAATAATGATATTGTAAATTGTGTTACAACACATCATGGCTGTTA AAATACTGTTCACTTTTCGTAAACTTGCAGTTAATATGATACCTTTGCCA GGTGTCATCCACGTCAACGTATACACAATATGTAATAGCTCCCTTGGGAA TACTGATACTACAAACGCTGTCGCCACCAGTAAAAGCATTTTCAAGACTC TATGATTCTCCTTTAAACGAGCTTGATTCTGTAAATGTGGTAGATTCTGG CCAACATTTTTCTTTATGTTTAGTTCTCGTTTAATCACAATAAAAGTTAC AAGGAAAACAGTCAAATATAATGAATCTCTAATCAGCATTATTGAAATGA CAGGATAAGCATAACCATGAACCTTGACAGATGGAACATTACATATTTTT GATCCTCCCGGCGAAACCTTTATCTTTGCGTAAATCAAATACGGTAATTC CATCACAATAGACAAAACAATAATAAACAGTACAATCATATTAATCCGTT TTTTAGGAATCGGATTACGGAACGGGAACTTCAGCGCGATACATCGATCA ATATTTATCACCATGATGATCCCGAGAGAAATAGATGTAAAAGAACGCCA TGTTAGTGGTAAAAGTTTACATCCAACCAAACCGAAATCCCAAGTTGAAA ATTGGTTTACTGTCAAATATATAAAGAGG Run BLAST on NCBI transcript from alignment at scaffold_331:420339..421669+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00059794 ID=TCONS_00059794|Name=TCONS_00059794|organism=Clytia hemisphaerica|type=transcript|length=1331bp|location=Sequence derived from alignment at scaffold_331:420339..421669+ (Clytia hemisphaerica) CTCACCTTTTGATATttcagcaaaacaaaaaaaaatattacataaaaata
tttcgcTTCAAAAATTCCACAAATACCTAAATGGAATGAGGAAGAAGAAC
CAGATtgatatgacgtcattattaGTAAGTGTGTGTATTTTCGATTCTCG
CTTTTATTTCTCAGAAAAGTCGAGGACTTCAGGGTAATTAAACTAGGTAG
TTGCTAATGAACTTTGGATTCTTTTCTCTTgtcattttaaaatctatttA
CAATATCATATCATTTTATTTGCTTTCCTACATCTCAACTGCATTACCAA
TTTGAAAAAAGGCAGGCGCAATCAATTAACAATTAACCCACAGTTACTGA
AAAAATCATGCTAATTATCTTTTCAGGAGAAATTAAATGTTAGAAAGATC
AGTCACTAAATTAACGTGGACAAGCCATCATTCAGTCATTTGGTAAGCAA
CCCAGTCtatattcaataaaatttatgtcacgaataaagaaaatcaatct
aCGGTACTCGTTGTACCACCATTAAAACTACTGAGCAATCTCTGCCTTGT
TGACAAATACGATCTGACACTTCCAGAAGTCTGTTTTTTCCTCGGTTTGG
CGATCGAGAAGAAAGTATCGAAAACAGATTTCCTGAATTTCCGTTGTAAT
TTTGCATAAATAATGATATTGTAAATTGTGTTACAACACATCATGGCTGT
TAAAATACTGTTCACTTTTCGTAAACTTGCAGTTAATATGATACCTTTGC
CAGGTGTCATCCACGTCAACGTATACACAATATGTAATAGCTCCCTTGGG
AATACTGATACTACAAACGCTGTCGCCACCAGTAAAAGCATTTTCAAGAC
TCTATGATTCTCCTTTAAACGAGCTTGATTCTGTAAATGTGGTAGATTCT
GGCCAACATTTTTCTTTATGTTTAGTTCTCGTTTAATCACAATAAAAGTT
ACAAGGAAAACAGTCAAATATAATGAATCTCTAATCAGCATTATTGAAAT
GACAGGATAAGCATAACCATGAACCTTGACAGATGGAACATTACATATTT
TTGATCCTCCCGGCGAAACCTTTATCTTTGCGTAAATCAAATACGGTAAT
TCCATCACAATAGACAAAACAATAATAAACAGTACAATCATATTAATCCG
TTTTTTAGGAATCGGATTACGGAACGGGAACTTCAGCGCGATACATCGAT
CAATATTTATCACCATGATGATCCCGAGAGAAATAGATGTAAAAGAACGC
CATGTTAGTGGTAAAAGTTTACATCCAACCAAACCGAAATCCCAAGTTGA
AAATTGGTTTACTGTCAAATATATAAAGAGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
Feature Name | Unique Name | Species | Type |
TCONS_00059794-exon-scaffold_331-1491911889:420339..420462 | TCONS_00059794-exon-scaffold_331-1491911889:420339..420462 | Clytia hemisphaerica | exon |
TCONS_00059794-exon-scaffold_331-1510915933:420339..420462 | TCONS_00059794-exon-scaffold_331-1510915933:420339..420462 | Clytia hemisphaerica | exon |
TCONS_00059794-exon-scaffold_331-1575043694:420339..420462 | TCONS_00059794-exon-scaffold_331-1575043694:420339..420462 | Clytia hemisphaerica | exon |
TCONS_00059794-exon-scaffold_331-1491911889:420715..421669 | TCONS_00059794-exon-scaffold_331-1491911889:420715..421669 | Clytia hemisphaerica | exon |
TCONS_00059794-exon-scaffold_331-1510915933:420715..421669 | TCONS_00059794-exon-scaffold_331-1510915933:420715..421669 | Clytia hemisphaerica | exon |
TCONS_00059794-exon-scaffold_331-1575043694:420715..421669 | TCONS_00059794-exon-scaffold_331-1575043694:420715..421669 | Clytia hemisphaerica | exon |
Position
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
scaffold_331 | supercontig | scaffold_331:420339..421669 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Biological Process
Term | Definition |
GO:0007186 | G-protein coupled receptor signaling pathway |
Vocabulary: Molecular Function
Term | Definition |
GO:0004930 | G-protein coupled receptor activity |
Vocabulary: Cellular Component
Term | Definition |
GO:0016021 | integral component of membrane |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category |
Term Accession |
Term Name |
biological_process |
GO:0007186 |
G-protein coupled receptor signaling pathway |
cellular_component |
GO:0016021 |
integral component of membrane |
molecular_function |
GO:0004930 |
G-protein coupled receptor activity |
Blast
The following BLAST results are available for this feature:
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