TCONS_00059798 (transcript) - C. hemisphaerica

Overview
NameTCONS_00059798
Unique NameTCONS_00059798
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1531

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00059798 ID=TCONS_00059798|Name=TCONS_00059798|organism=Clytia hemisphaerica|type=transcript|length=1531bp
CCGGCGCGCCAATTCCCGCCTTACTCTCTTAACAAATCTGGGATAAATTC
GGTTTCTAAATCGGgattttaaaatgaaagctTTCAAAGATGGTGGCGAA
AGTCGTGGAAAGTGACTGAgcaatttttttgtgtttttctatATTTAAAA
GAAGtcAACAAAGGTCAAGCTCAATAAGTTTGTATGTTGAAAATGGCAAC
ACTTCGTAACCTTCAccaatcaataaaatcaaagatttcAATACAACAAT
TTAAGCGACAGTTGAGTGTCACTGTGTACTGTCATCAAGAATTTTTGCGG
ACTTCTATCAAAGATGATGAGAAGGGAATCAGGAGAATCACACTAGATGA
TACAAAGAAAAGGAATGCGCTATCGCTTGCAATGCTTGATGAATTGAAAC
AGCATTTACAAGATGTAAATATGAACGAATCAGTGAAAGTGGTTGTCCTC
TGTCACACTGGATCTGTGTTTTCTGCTGGTCATGATCTAAAAGAATTGTT
AGATGAAACAGGATCAAAGTTCCACTCACAGATTTTCAATCGATGTACTG
AAGTTATGAATCTTGTCCAGGATATTGATGTACCAGTTATTGCAGAAGTT
AGAGGTGTGGCAACTGCTGCAGGATGTCAATTGGTTGCCACTTGTGATTT
AGCTATTTGTTCTGATACTTCAAAATTTGCTGTTCCAGGAGTTCTGATTG
GTTTATTCTGTTCTACACCTGCTGTTGCTCTTGCACGCGCAGTGAACAGA
AAACAAGCTTTAAAGATGTTGCTCACAGGTGATCCAATCAATGCAAAGGA
AGCATTAGATTGTGGTTTGGTCAACAAAACAGTCCCCATTGAAGATGTTG
AAAAAACCACACAGGAACTAGCAGAGAGAATCACACGACACAGTTCTCGT
GTCATCGGTCTTGGCAAAAAGACTTTTTATCAGCAAATCAAAGAGAACAG
AGATGAAGCCTATTGTATTACAGGTAATGTAATGGTTGATAATCTTACCT
ATGAAGATGCACAAGAAGGGATCCGGGCTTTCTTTGAGAAGCGCCAGCCT
GAAtggcaaaataacaaataaCACAACACTGGAACATGCATAGATACAGC
TTTATTAAATTATAATGTAAAATATCCTAACTCCTGATTGGCTTTGTAAC
AACAATGCAAGTAAAAAGTCAGTGCAAATCTAGATTAATTCACATTATCT
GTAATTTTACTGATGGTTTATTTGAAAAAGGTCTTTATAATTTTGTTATT
TAGATAAaactcaaattgttcttaaaatttatttttgatgggTATTAATT
ACATTTGGATCCTCTGGAAGATGATTGGAAagttggaaaatatattttcc
ctCTCACATCTAAGACTAAGTAAAGAAGGTTATcgataataaataaattt
aaaaggCTTTGTGAGAAAAATCCTAACGGTTCATCTCcgatatattttat
tgtttgtaGAACTTTTTTACATCATAaatctttttatcaaacaattttat
tttgtagaTAGAGTTTTTTCAGACaattttg
Run BLAST on NCBI

protein sequence of TCONS_00059798-protein

>TCONS_00059798-protein ID=TCONS_00059798-protein|Name=TCONS_00059798-protein|organism=Clytia hemisphaerica|type=polypeptide|length=295bp
MLKMATLRNLHQSIKSKISIQQFKRQLSVTVYCHQEFLRTSIKDDEKGIR
RITLDDTKKRNALSLAMLDELKQHLQDVNMNESVKVVVLCHTGSVFSAGH
DLKELLDETGSKFHSQIFNRCTEVMNLVQDIDVPVIAEVRGVATAAGCQL
VATCDLAICSDTSKFAVPGVLIGLFCSTPAVALARAVNRKQALKMLLTGD
PINAKEALDCGLVNKTVPIEDVEKTTQELAERITRHSSRVIGLGKKTFYQ
QIKENRDEAYCITGNVMVDNLTYEDAQEGIRAFFEKRQPEWQNNK
Run BLAST on NCBI

transcript from alignment at scaffold_331:444839..452599+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00059798 ID=TCONS_00059798|Name=TCONS_00059798|organism=Clytia hemisphaerica|type=transcript|length=7761bp|location=Sequence derived from alignment at scaffold_331:444839..452599+ (Clytia hemisphaerica)
CCGGCGCGCCAATTCCCGCCTTACTCTCTTAACAAATCTGGGATAAATTC GGTTTCTAAATCGGgattttaaaatgaaagctTTCAAAGATGGTGGCGAA AGTCGTGGAAAGTGACTGAgcaatttttttgtgtttttctatATTTAAAA GAAGGTAAGATTCTTCGCTATTCTGCCCTTCCATTTCGTCCCTGTGTATC TAAAGTCCTTATTTTCGTTGCAATCGGCAGCAGAGAGATTAAATCAGCTT TTATGATGGCGCGCCCCTGCCCTCCCTGGACCAGTTGAACGACTGCACCA atgataatttttcttctttaatttcccaattctttttcttctttttactc TTAGCTGGAGAAAATTAAGGACCGTCCCGGCGCTCCTGAAACTTCTGGAG TTTTCCCGAGCAACTTAAAAACACTATTTCTCTCTCCAGAAAGTTATGGA GCCCTTCCAGTGCTTCTGGTAATCTGGATCATATCAAGTGATTTTTATCA GTTTCTAAAATATATACcgtttaaaacatccaaaagttATTTGTCCCCAG GTTTTATGGAGACTTTGGTCAAATAAAATACTTTGAGGATGATGGTTCAg ccaatgaaattgaatttgtcacattagttaggggtcagtcacaaatcgat tctaggttagaagaacgtcaattgacgttttaaaagctgacccacccacc cacacccaaaaacgtcaaacacctTGATATCCCCGAAAACCGATAAAAAC TGCCTTCATtgctgtttcgtcagccatcttgattttcactacggctcgca tagtttataaatttgaaaaaaaaaaaaacggagataatttctaaacttgt tcacaaaattcccgtaattaattatctccgtagtatatgtagcgacagaa agaacggccatctgcaaaaattcaagggccgttcgggccgtcaaacaaag aaaagacataaacatcgggccgtgttttggttttcaaaacaaacgaagTG ATAAAACAAACATGGCGAgaagtaatatttggcatggagaatgaaaaatc gatgtttctgaaaaacgtcaacaacctttaacccacccacccatatacgt caattgacgttcttctaacttaaaatcgatttgtgactgaccccttaggg tgcgcactcgtcaggattttttgcgtggaacaagtcaaaaatgaaaatta gaaCTTTCCATCCATAataacttatccttaacaactccaaacttattgat tcttttgttttaaatactcagaatttatcagagaaaacaaagaaaaaaac tccatcccattacctaccttcaataaaTACCATTTATTAGACATCAAGGT TAAAAAATGGCGACTCGGAATTCGTGGCACCACCGTCGAGCTTGACCACC TTTTTTCAAATAGctatcgctattgagctggattagttatagactcacgg ttttttttataaaacgcgggaaagatagtactttagtttgtcacgTGTGG TGGTAGCCTTTTCGATAATCTATATATGGTCCGTctttaaatcgagaaaa aagaagaaatttctattttttggcactttcctgaaatttttatcaggacT ACCATATATATCGTTAGAAAGCTaagggtttcagcttttcattggtaaaa tttgtttttagctatcatttccagctcatttaGCGATAGACTAAAGTTTA ACAGCCATCAGCATcaggccgattttcagaccgcgccagcaaaactcctc acgccCCGCCACGCGGAAGGCTATAATTCACCTGCCATCTTTATGTTTTT CGGTGCTGTCCAAAGGTCATTTCTTGGTTGCGCGTGGTAGGGAGACGATT CCttgaaaaggtggtttttttgtggtttgaaaattgaataacttttgaac tactgaaccaattttaacaaatgacccctcatttttctcacaaaggtaag gactttcaaataaaattagtttggttttcaaaatttgaggggaaaatttt ggcctgaccaCCCTACATAAGTGGGTGGCGTACGATATTTCAGAATTGCG GAAATTGACCCTAATTTCTTCGGAATTTCAGAAATTGAggaaaattcctt cggtatttcggaactCTGAAATTGTTCCGGTAtcagaaatccatgaattt ttgcctCCAAGTTTCGgttattataaagtttttagccCCCTTTTTTGGAG GAATTCATAcataaaaaatttggaaaattagtcaaaacgaggaaaaatac ctaaaaaatCGGTATATATCGggattgcaagtatttttttacggaatttc tgaaattttggctaaattatttcggaaatcgcaaacctcGTACGTCCCCC CACATTAGCTATATTTGAAAGTATCACTGGTCAAAATATTGAAACTACCA TGAGtaggctaattttttttaaataaacgcGTGCGCAGTCCAGTTAGCGG TGCAGACCGCCAATCACCGAAAATCCGGAGCGCCAGGAGCAGGAGGGTCT TGAAAATTATCGATTGAAATTTCTTTCAGACGGGAGTTCACTGGTGTTCT CTGCGGGgttggcttttttcaactttgCCAAATCCTCAAACCATGCTTAT GGTTTTTGGTTTTTGGTAGAACTTAGAACTTAGCGGGCTGCAGCCAGATA ATTtaacaataaaagtttttggaatttacaaaaaatcttttgtttaatTG TCAATTGGATGACAGTGCCTACAAGGTCCTTTTACAGAAGTATATAGTCG ACGAGTATCGTCAACTGCTATTGGGCATGGGActactatctgacaaaaca tgggggTGAATTGCACCAAATCTGTACCATGGGTTTGTAAACAAGACAAA CTGCCTTCAAATTGCCATAGAAGTAGATGTGTTAGGTATTAGTAGAACTT GAGTTGTTGTGGACATAGTACTGCGGCAGAAGGTATCAGTCAGGActaaa gttatttttgatacTTTGTTTCGTCTTTGAAATATTAGCAAAAATCTGTG ACGGACGGGACTCACGCATATGGGCCTGTCTTCTATCCCCTTAATTTCAT ATTAGACTTTCTAGATTCTTGTCAATTTTATGTATAAGAGTGTTATTCTA TAATGGaagtaatttgaaaattttcagctaATTTCTTGAACCAAACTTga gttataactgaaaatgtgtGACGGACGGGacactatttttttgttttcaa aggtAAATTTGGCACAAGATGCTTATTTGATCAAGAATTCTGTATGTTCT GAGGatgcatttttgtattttgagtaTTCTCCTATCAAGGTGTGACCAAT TAGTGCAGAAAACTGTTAAGATTTTGATTAAGTTTTTCCTCTAAGTAGCT ttgaacaccaaattttgctctgaaaacatcaaaattgtGTCCCGTCCATC ACACGTTTTCAGTTATAACTCAAGTTTGGTTCAAGAAAATGGCTTGTAAT TTGCAAATCATATACTTCCATTATAGAGTAACATTTTTACATAAAATTAA CAAGAATTTAGAAAGTCTAATTAAAAATTGAGTGGTAGGAAGACAGGCAT ATGCGTGACGGACCGGACCGTCACAGATTTTAACTATTATTTCAAagaca aaacaaaatataaaaaaattacttaGTCCTGACTGATACTTTCTGCTACA ACAGTACTAAATTCACAAAAACTTAAGCTCTATTACCTAATGTATCCCAT TCTATGGTAATTTGAATACAGTTTGCCTTGTTTACAAAACCACGGTACAG ATTTGGCGCAATTCACCCATGGGACAGCAAtcaatttgtattaaaaaata cacgatttctctttcgcaccaagtaggttttttaattcaaaatatgaaaa aaatccgtagtggagtACATGCAAATATCTGGaatgaagaagaccaaatt agtagCAAAACGATGAGAGCGTTTGGCGTCACTCttgcggcaagttacac actcgttatttgttaatcccattgcatcgggcgataggcggttaggcgga aggagttctctaattctccgatcagcgtccggtcattttgaatgaaaaca aaaaagttaaaaagggcgcgctttcatgaaagttatcgtgacatgttatg acagaaagtatgattgataaacttggtggagttatcgaaaaaaatttgtt gtcaaagagatttaacagtaagtgaaaacacaggccagatatcaacagcc CCATGTTTTGatcaatcgtcccaagttagagcagttgacggtagtctGTT TCCCCAAGGCCAAAATATCTTTCTCCCCAGAGATGGATAGCTTTTATTTT TACCAGAAAATTTGGGAAACAAATAAAGATTTCAAGGAGATGGCAtactg taacttggtctaatgttgacatctcGCATCTTTTTATCAgttgaaattga tagaaaggtcaaaggtatttttctttgcttagtggtcaagGGATACTTTT TAATACTTTTTCAATCAGGATCCTCCCGACGCTCTGTAAACTTCCGGAGT TTTCCGGAGcagctaaaaaaaaaaaaaatttttctattcGGAAAGTTCCA AAGCTCTTCTGGTGCTTCcggagcaagtgatttttaacttgttctaaaaa actgtttaaaggtttatataaaaaactatcagatattttaataaaatact TATAAGTCTGGTTGAGGATGATGTTGTTaatgaaattaaatttgtcACAT TATATTCAAAAGCATCACTaatcgaaaaaatttaaaatgtgaCGTTTCAC GACACTACCATTTTGATTATCATTAGGAAAGAAAGGAGCCTTTTAAGAAA TTTGTTTATTATTGTTATCCAAACAACAttaattggaaaactttttgttt tgttttgaaagtggcagtctatggagagtcttcatttgataaaaacgcgg gAATATTTTATGTCTACCCAGAGATTTCAATATACCGGtttcctttgtta tttcaaTCCGGAGCTAGAAACTTAGTATTGGAGCTGATTGGAGCTGTCAA GTTGAAGACCGCGGGCATGCcccttgaatgttttgattgcaatgTAAAGT CTTCTAGTTTTTTTCTCCGTgtctggaatgttttgatcgcaatgtagagt cttctttttcttactttcaattttgttggtcgcagactggacgtctAATT TCCAaactgattgcatcaacttttttatcaatatttcagacgAAGGAAAC TGTATTgtgatttttatagaaatgctttctaacatactcatCGTTTTGGA CAACTAATTTTGGAGTGGCAGTTGAAGCATTTTTTCTTAggaagcttttt tgtccacaggtagccattttttatttttttttgaaaaacacagttttttg tgtgcttccgtgcaaagttggatctttcaGATTCTACTCGTtcttttcta gaattttttttgcacagtaccggaaataggtcaaggcagataacTACCGA AAGAGATTCTCTAGAGCTTTGTTAAtggtatgacttttctgggttcaaag acgttcggtcgccGACTAGACCGGTcaccaactgggcaggggactctagg CTCAAAAAGCAAAACGTTTTCTCAAGAAAACACAAAAGTTTTGTAACAGA TTTAAATAATATACAGCAAAGAGGAACAAACGCTCTCATATATTAGTATg tacagggctgcaaataagcgtcTGTCATCGctcaatgtccgactgaaaaa gctatttgacagactgaaaatcttttgtgtcggtcatgatgtccgaatga aaaaaggaataaaccattaacttgagttgaaaataaatctcttgcacccc tgtctcttacttagcctattcttttaatactcaCTTCCTTTTtagctttc agggtgtttctaagttaacttttatcaaattgctttcttcgtaactttca agagtgtttctaagctCACTTTTATCGGCTTGCTTACTTCATTACTTTCA AGAGTagttctaagatcacttttatgtgtttcaaagttaacttttatcga ctcacTTTCTTTGTAACTTCCAAGGGAAGATCACTTTTATTTTACCTAct cgctttctccgtaactttcAATGACCaacaggattttgagtttgaccaaC AGGATTTCATTTttgtcggacatgatgtccaattgactgaaaatatttat ttgcagccctgagTGTATAATATTTTGTAAGCTTAAAAGCATTTGATATA CTGATTTGAAAGAAGGAGggaattgaaaaagaatgtcaAGGAACCAAGCA AAACACACAAATAAGTTAAGTATTTCTgcgtaaaaagaaaaatcaagtga gtttttttttgtcaCTCGCATTTCCACACAATACTATTCTTTTTGGCCTG TAGAGAAATAATAacataaagtttttttaaatagtcAACAAAGGTCAAGC TCAATAAGTTTGTATGTTGAAAATGGCAACACTTCGTAACCTTCAccaat caataaaatcaaagatttcAATACAACAATTTAAGCGACAGTTGAGTGTC ACTGTGTACTGTCATCAAGAATTTTTGCGGACTTCTATCAAAGATGATGA GAAGGGAATCAGGAGAATCACACTAGATGATACAAAGAAAAGGAATGCGC TATCGCTTGCAATGCTTGATGAATTGAAACAGCATTTACAAGATGTAAAT ATGAACGAATCAGTGAAAGTGGTTGTCCTCTGTCACACTGGATCTGTGTT TTCTGCTGGTCATGATCTAAAAGAATTGTTAGATGAAACAGGATCAAAGT TCCACTCACAGATTTTCAATCGATGTACTGAAGTTATGAATCTTGTCCAG GATATTGATGTACCAGTTATTGCAGAAGTTAGAGGTGTGGCAACTGCTGC AGGATGTCAATTGGTTGCCACTTGTGATTTAGCTATTTGTTCTGATACTT CAAAATTTGCTGTTCCAGGAGTTCTGATTGGTTTATTCTGTTCTACACCT GCTGTTGCTCTTGCACGCGCAGTGAACAGAAAACAAGCTTTAAAGATGTT GCTCACAGGTGATCCAATCAATGCAAAGGAAGCATTAGATTGTGGTTTGG TCAACAAAACAGTCCCCATTGAAGATGTTGAAAAAACCACACAGGAACTA GCAGAGAGAATCACACGACACAGTTCTCGTGTCATCGGTCTTGGCAAAAA GACTTTTTATCAGCAAATCAAAGAGAACAGAGATGAAGCCTATTGTATTA CAGGTAATGTAATGGTTGATAATCTTACCTATGAAGATGCACAAGAAGGG ATCCGGGCTTTCTTTGAGAAGCGCCAGCCTGAAtggcaaaataacaaata aCACAACACTGGAACATGCATAGATACAGCTTTATTAAATTATAATGTAA AATATCCTAACTCCTGATTGGCTTTGTAACAACAATGCAAGTAAAAAGTC AGTGCAAATCTAGATTAATTCACATTATCTGTAATTTTACTGATGGTTTA TTTGAAAAAGGTCTTTATAATTTTGTTATTTAGATAAaactcaaattgtt cttaaaatttatttttgatgggTATTAATTACATTTGGATCCTCTGGAAG ATGATTGGAAagttggaaaatatattttccctCTCACATCTAAGACTAAG TAAAGAAGGTTATcgataataaataaatttaaaaggCTTTGTGAGAAAAA TCCTAACGGTTCATCTCcgatatattttattgtttgtaGAACTTTTTTAC ATCATAaatctttttatcaaacaattttattttgtagaTAGAGTTTTTTC AGACaattttg

Coding sequence (CDS) from alignment at scaffold_331:444839..452599+

>TCONS_00059798 ID=TCONS_00059798|Name=TCONS_00059798|organism=Clytia hemisphaerica|type=CDS|length=888bp|location=Sequence derived from alignment at scaffold_331:444839..452599+ (Clytia hemisphaerica)
ATGTTGAAAATGGCAACACTTCGTAACCTTCAccaatcaataaaatcaaa
gatttcAATACAACAATTTAAGCGACAGTTGAGTGTCACTGTGTACTGTC
ATCAAGAATTTTTGCGGACTTCTATCAAAGATGATGAGAAGGGAATCAGG
AGAATCACACTAGATGATACAAAGAAAAGGAATGCGCTATCGCTTGCAAT
GCTTGATGAATTGAAACAGCATTTACAAGATGTAAATATGAACGAATCAG
TGAAAGTGGTTGTCCTCTGTCACACTGGATCTGTGTTTTCTGCTGGTCAT
GATCTAAAAGAATTGTTAGATGAAACAGGATCAAAGTTCCACTCACAGAT
TTTCAATCGATGTACTGAAGTTATGAATCTTGTCCAGGATATTGATGTAC
CAGTTATTGCAGAAGTTAGAGGTGTGGCAACTGCTGCAGGATGTCAATTG
GTTGCCACTTGTGATTTAGCTATTTGTTCTGATACTTCAAAATTTGCTGT
TCCAGGAGTTCTGATTGGTTTATTCTGTTCTACACCTGCTGTTGCTCTTG
CACGCGCAGTGAACAGAAAACAAGCTTTAAAGATGTTGCTCACAGGTGAT
CCAATCAATGCAAAGGAAGCATTAGATTGTGGTTTGGTCAACAAAACAGT
CCCCATTGAAGATGTTGAAAAAACCACACAGGAACTAGCAGAGAGAATCA
CACGACACAGTTCTCGTGTCATCGGTCTTGGCAAAAAGACTTTTTATCAG
CAAATCAAAGAGAACAGAGATGAAGCCTATTGTATTACAGGTAATGTAAT
GGTTGATAATCTTACCTATGAAGATGCACAAGAAGGGATCCGGGCTTTCT
TTGAGAAGCGCCAGCCTGAAtggcaaaataacaaataa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_037621XLOC_037621Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00059798-proteinTCONS_00059798-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00059798-exon-scaffold_331-1491911889:444839..444992TCONS_00059798-exon-scaffold_331-1491911889:444839..444992Clytia hemisphaericaexon
TCONS_00059798-exon-scaffold_331-1510915933:444839..444992TCONS_00059798-exon-scaffold_331-1510915933:444839..444992Clytia hemisphaericaexon
TCONS_00059798-exon-scaffold_331-1575043694:444839..444992TCONS_00059798-exon-scaffold_331-1575043694:444839..444992Clytia hemisphaericaexon
TCONS_00059798-exon-scaffold_331-1491911889:451223..452599TCONS_00059798-exon-scaffold_331-1491911889:451223..452599Clytia hemisphaericaexon
TCONS_00059798-exon-scaffold_331-1510915933:451223..452599TCONS_00059798-exon-scaffold_331-1510915933:451223..452599Clytia hemisphaericaexon
TCONS_00059798-exon-scaffold_331-1575043694:451223..452599TCONS_00059798-exon-scaffold_331-1575043694:451223..452599Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_331supercontigscaffold_331:444839..452599 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
3.10668 2.67162 2.82946 2.8098 49.8951 35.313 17.5889 20.4145 19.5215 14.5858 16.6941 12.2873 10.2076 9.13646 16.3811 20.9263 21.5041 17.6492 6.7802 7.3173 9.41438 7.39339 11.6434 12.4743 12.7066 13.3144 14.2209 9.23731 19.9602 14.7486
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR014748Crontonase_C
IPR001753Crotonase_core_superfam
IPR029045ClpP/crotonase-like_dom
Vocabulary: Biological Process
TermDefinition
GO:0008152metabolic process
Vocabulary: Molecular Function
TermDefinition
GO:0003824catalytic activity
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008152 metabolic process
molecular_function GO:0003824 catalytic activity
Blast
BLAST of TCONS_00059798 vs. Swiss-Prot (Human)
Match: ECHD3 (Enoyl-CoA hydratase domain-containing protein 3, mitochondrial OS=Homo sapiens GN=ECHDC3 PE=1 SV=2)

HSP 1 Score: 270.011 bits (689), Expect = 1.148e-85
Identity = 131/247 (53.04%), Postives = 176/247 (71.26%), Query Frame = 1
Query:  325 GIRRITLDDTKKRNALSLAMLDELKQH-LQDVNMNESVKVVVLCHTGSVFSAGHDLKELLDETGSKFHSQIFNRCTEVMNLVQDIDVPVIAEVRGVATAAGCQLVATCDLAICSDTSKFAVPGVLIGLFCSTPAVALARAVNRKQALKMLLTGDPINAKEALDCGLVNKTVPIEDVEKTTQELAERITRHSSRVIGLGKKTFYQQIKENRDEAYCITGNVMVDNLTYEDAQEGIRAFFEKRQPEWQN 1062
            GIR I L + KKRNALSLAML  L+   L D + N+ +KV+++   G VFS+GHDLKEL +E G  +H+++F  C++VM  +++  VPVIA V G+A AAGCQLVA+CD+A+ SD S FA PGV +GLFCSTP VALARAV RK AL+ML TG+PI+A+EAL  GL++K VP  ++++ T  +A +I   S  V+ LGK TFY+Q+ ++   AY +T   MVDNL   D QEGI AF +KR+P W +
Sbjct:   55 GIRNIVLSNPKKRNALSLAMLKSLQSDILHDADSND-LKVIIISAEGPVFSSGHDLKELTEEQGRDYHAEVFQTCSKVMMHIRNHPVPVIAMVNGLAAAAGCQLVASCDIAVASDKSSFATPGVNVGLFCSTPGVALARAVPRKVALEMLFTGEPISAQEALLHGLLSKVVPEAELQEETMRIARKIASLSRPVVSLGKATFYKQLPQDLGTAYYLTSQAMVDNLALRDGQEGITAFLQKRKPVWSH 300          
The following BLAST results are available for this feature:
BLAST of TCONS_00059798 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
ECHD31.148e-8553.04Enoyl-CoA hydratase domain-containing protein 3, m... [more]
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