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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00059833 ID=TCONS_00059833|Name=TCONS_00059833|organism=Clytia hemisphaerica|type=transcript|length=1425bp
gtcaaaaataactttaaaacgacACCATAAAAACTTATAAGGCAATCTCA
GATTACACTGTTTTGTAATATCAATTTTCttgcatcaaattttaaaaatt
gtatttctgTATTCTTACTTAAACCGTTGATCAAGTGGGGTAGAGAAGAC
TGACGAGATCATAATGGCAAATATTTCTGTGATTCTAGTTTTGCTTGCAC
TCTCTATTGCAACAATTCACGGGTTACCGAAACATAATGAGCCAAGACAG
ACATTAGCAAACTATGCTTTAAGAGATTTTCAAGTCCACCTCTCGGCAAG
AGACAATGGATGTGATTGCCATGGAGATTCATGTTATTGTTGTGTCCATG
CAGAAGTGGAGAAAATTCACCTCAACCACACAGTATGTGTTGTTTTGGAT
TACATACCCGACGAATTGGGATTGGATGTGAAGCTCAACATAGATGACGT
CACTCTTTTCGTTGAAAAAGTCTCTCtgCGAAACCCACCACCACTCTGTG
CCGGTATCCCACACTTGGAGAAATACGCAAGCGTGTGTATTGACTTCTTT
AACATTGAATGGACAGAGAAAGTCGGAGGATGTATCAAACTCGATGCTAA
ATTGGCTGGAATCACTTTAGAAGAGATCAATATTGGTTGTTTCTTTTATC
CATTAACAAAACATCAAATGCGCAATGTATTGTGGGAACAACACGTGATG
GAAGAACTACgaaaaagtttcaaacaaaTTCAAGCAAAGAAACAGCAAGA
AATTTACAGAAATTTCGCACTGGAAGAAGATGTATAAAGTTTAAAACGAA
TAACGTGGGAAAACCGAGGAAgctaaaaaagtatttttttatttttctct
aacTTTTTTGCACTTAAAATTTGACGAAAGTGAATATTTTGAGTTCATTA
GATTATCAATCTTGTTAACCATAATAGATTTATACAAGTAATATCATGta
gcaaatttcaaaaaatccacATAAAATGTTCTgtaattatttgaaaattc
caTGTTTCATTTCTCCAAATTCGAAATCCGTTTGTCTTTCTGAGTTGATC
TAAAATGAACACTTTTTCAATAGCTTCAAAAAGCCTAACATCGAAATCGT
TCTCTGCGATTCAAAATAATGATCTTTCTTCGACCTCTCCTCATTAAATG
TTCTTTTTACACCAAAAGTATCCCATTTGTATCCCTTAAAAGGCGATTTT
TTTCATCAACAAATACATTAGCTGATCAACTTCCATACCGTGTAGATTAT
TCGCGTCACCTTGTAGCCTCATCAACAGTCCACCGTAAGAAACGTAGGCT
GATCTGAAAAGAATATATTTAATAATAATGAAATTAAACGTGGCCAAGAG
TTTGTTCGTCCAAGATTCTCAACAATCATGCAATTatacttcatttttct
tcaaaaatacaacggaatatttctt Run BLAST on NCBI protein sequence of TCONS_00059833-protein >TCONS_00059833-protein ID=TCONS_00059833-protein|Name=TCONS_00059833-protein|organism=Clytia hemisphaerica|type=polypeptide|length=207bp
MANISVILVLLALSIATIHGLPKHNEPRQTLANYALRDFQVHLSARDNGC
DCHGDSCYCCVHAEVEKIHLNHTVCVVLDYIPDELGLDVKLNIDDVTLFV
EKVSLRNPPPLCAGIPHLEKYASVCIDFFNIEWTEKVGGCIKLDAKLAGI
TLEEINIGCFFYPLTKHQMRNVLWEQHVMEELRKSFKQIQAKKQQEIYRN
FALEEDV Run BLAST on NCBI transcript from alignment at scaffold_331:814468..818024+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00059833 ID=TCONS_00059833|Name=TCONS_00059833|organism=Clytia hemisphaerica|type=transcript|length=3557bp|location=Sequence derived from alignment at scaffold_331:814468..818024+ (Clytia hemisphaerica)
gtcaaaaataactttaaaacgacACCATAAAAACTTATAAGGCAATCTCA
GATTACACTGTTTTGTAATATCAATTTTCttgcatcaaattttaaaaatt
gtatttctgTATTCTTACTTAAACCGTTGATCAAGTGGGGTAGAGAAGAC
TGACGAGATCATAATGGCAAATATTTCTGTGATTCTAGTTTTGCTTGCAC
TCTCTATTGCAACAATTCACGGGTTACCGAAACATAATGAGCCAAGACAG
ACATTAGCAAACTATGCTTTAAGAGGTAAAAATGTTTCATCAACACATAC
ATTTCTTGGGTTGTAGTAGGACTGAGAGTAATTTAGGATTTTGGCCAAAA
CCTGCTGTTAGACTAGAGATTTAGAACTTTATTATCTCGGTTGCATAAAA
AGTAAGTTTGACTACGTAGATTAAAGGCCTTCTACATTCACATTATATCA
CCATATCAGCTCTAATGTAATAAAGAAATCCAATTAAATTAGCCTTTGAT
AATAATTGAATATTTGATTCAGATTTTCAAGTCCACCTCTCGGCAAGAGA
CAATGGATGTGATTGCCATGGAGATTCATGTTATTGTTGTGTCCATGCAG
AAGTGGAGAAAATTCACCTCAACCACACAGGTAATAAGCTAACGTACTTT
ACctacagatttataaagcccgaagtgATGTCGTGCCTTATAAAGCTCTT
CTAAGCAAGAAAAAAGTGAGAATCTCAagaaatattgctgctattgtttt
tgaaaacccacgaagcttcttattgttcaagcgctgaaattttattgtaa
tgtcacgtgacctaggtaggatttcctacctaacctcggtaCACTTTGCA
GCCAAAGCACgactctctcttattcgaactcgaacggggatCGAATCTAA
ATCTGTTCGAATTGTAGAAAGATTCAAACTGTAGAAAGGGTTTTACTTAG
GTTTTTCCTTGAAGGGGAATGATAGTTAATTTGAAcgatagaaatattcg
aatgatagaagttcgaattagcgaaatTCGACTTAATATTAGGATCCAAC
ATGCCTTTTtctgatgttggatgaaatgttggaccagtttgcgtcaattc
aaatttttggaaaaaatgaaaattcaaaaaagaagaaaacaatcgTGTTG
GACGGTGATCCaacattttcacatttttatgtcggatgaaatgttggatc
ggtttgccccgGCCTTGATTTTCGCTTAATCCAACCACGAAcgagatttt
cttgaaaagaaagcaattttttttcatcttcgttatctcttttccttttt
cagTATGTGTTGTTTTGGATTACATACCCGACGAATTGGTAAGTGAAACT
ACTAACCCTTCGAATAATCCCATGATCAACTATAACAAGGTTCCGTGGTA
ATCAAGTTCGAAATATATTAAGAATTTTTATACTTAAATACTCTAGAATT
TTTCAGAATAAGATCGGGTGAGAATCGTGATTTTAGCACTCCCCCTTTAt
tatttcattggatatttcgattttgggaGGGTGGGAGATtcagtggcttc
taggctatattcccaGCCTATCCAGagcaattttgagcttttgaaaCCTG
AAACTTGGCAAAAGTCTATCGTTAAAATCTTACATTCCAGAAGTAATTTA
GAGCGATTGAAAATCATTTGCATTGTTTAAAAATTGGAAGGAATTCCCAC
ATTTTGATTAAAATATTACGATTTTAATTATAGACGAAACTTTTCAAATC
TGCGGATATCTCCTAAAAAAAGGGCAAAATTCGCCTGGAAAAAAATTGCC
CtttaaagttaaattttttttatctactttAATGCTTTTAATCCGTAAAG
TGAGGTTGGAGGaagtaaaataaatttttacccCTTGTAAATTTCAGAAT
AacttttaaccccctggaaatttcaaaagttttcttcgaTCACTTGGAAT
AATAAGTGGGAATATCATTAttatcaaaaaacaacaaatgttTATTAATA
GACAAGTTTTCGTATATTTTCAGGGATTGGATGTGAAGCTCAACATAGAT
GACGTCACTCTTTTCGTTGAAAAAGTCTCTCgtaagtaaaatcaaaaaat
aaaatttgttttcttctttccacTCTTAAGCTAAGGCTATACTGAGCAAT
TTTTTCAGGCGCTTCCAACACAATCTTTGCAACAAGCGcccgaaaaaaaa
agattgtagCCTAGTCAAATTCTCTGCAATCTTTTCTGCAACGCaataaa
acgcaaaaaaatatcgcaaaaaaaaattgcaggAGGCTGCAACAAAATAG
ATCAGATCAAAAAAAGAGGAGAAATTCTCTTTATGtttacttttcttctt
ttgtccTATTGTTTAAAACACTCGTaatacaaattatttttttggctgga
tGAAATAAGCTGTGAGaaggaaatttaaaattttaaaattaattgcAAAA
CTTATTTTTGGTGGCTAGAATTAAACTCTTTTCGAGTGCAGCGCAATTGG
CAACAATTATTGCATTGCACGCGCCTGAAAAAATTGCTCAGTATAGCCTT
AGCTTTCCAGGCAATAATTCTCCAAGGTAGATTTGACTCtcaataattta
tttttcagtgCGAAACCCACCACCACTCTGTGCCGGTATCCCACACTTGG
AGAAATACGCAAGCGTGTGTATTGACTTCTTTAACATTGAATGGACAGAG
AAAGTCGGAGGATGTATCAAACTCGATGCTAAATTGGCTGGAATCACTTT
AGAAGAGATCAATATTGGTTGTTTCTTTTATCCATTAACAAAACATCAAA
TGCGCAATGTATTGTGGGAACAACACGTGATGGAAGAACTACgaaaaagt
ttcaaacaaaTTCAAGCAAAGAAACAGCAAGAAATTTACAGAAATTTCGC
ACTGGAAGAAGATGTATAAAGTTTAAAACGAATAACGTGGGAAAACCGAG
GAAgctaaaaaagtatttttttatttttctctaacTTTTTTGCACTTAAA
ATTTGACGAAAGTGAATATTTTGAGTTCATTAGATTATCAATCTTGTTAA
CCATAATAGATTTATACAAGTAATATCATGtagcaaatttcaaaaaatcc
acATAAAATGTTCTgtaattatttgaaaattccaTGTTTCATTTCTCCAA
ATTCGAAATCCGTTTGTCTTTCTGAGTTGATCTAAAATGAACACTTTTTC
AATAGCTTCAAAAAGCCTAACATCGAAATCGTTCTCTGCGATTCAAAATA
ATGATCTTTCTTCGACCTCTCCTCATTAAATGTTCTTTTTACACCAAAAG
TATCCCATTTGTATCCCTTAAAAGGCGATTTTTTTCATCAACAAATACAT
TAGCTGATCAACTTCCATACCGTGTAGATTATTCGCGTCACCTTGTAGCC
TCATCAACAGTCCACCGTAAGAAACGTAGGCTGATCTGAAAAGAATATAT
TTAATAATAATGAAATTAAACGTGGCCAAGAGTTTGTTCGTCCAAGATTC
TCAACAATCATGCAATTatacttcatttttcttcaaaaatacaacggaat
atttctt Coding sequence (CDS) from alignment at scaffold_331:814468..818024+ >TCONS_00059833 ID=TCONS_00059833|Name=TCONS_00059833|organism=Clytia hemisphaerica|type=CDS|length=3120bp|location=Sequence derived from alignment at scaffold_331:814468..818024+ (Clytia hemisphaerica)
ATGGCAAATATTTCTGTGATTCTAGTTTTGCTTGCACTCTCTATTGCAAC
AATTCACGGGTTACCGAAACATAATGAGCCAAGACAGACATTAGCAAACT
ATGCTTTAAGAGATTTTCAAGTCCACCTCTCGGCAAGAGACAATGGATGT
GATTGCCATGGAGATTCATGTTATTGTTGTGTCCATGCAGAAGTGGAGAA
AATTCACCTCAACCACACAGTATGTGTTGTTTTGGATTACATACCCGACG
AATTGGGATTGGATGTGAAGCTCAACATAGATGACGTCACTCTTTTCGTT
GAAAAAGTCTCTCtgCGAAACCCACCACCACTCTGTGCCGGTATCCCACA
CTTGGAGAAATACGCAAGCGTGTGTATTGACTTCTTTAACATTGAATGGA
CAGAGAAAGTCGGAGGATGTATCAAACTCGATGCTAAATTGGCTGGAATC
ACTTTAGAAGAGATCAATATTGGTTGTTTCTTTTATCCATTAACAAAACA
TCAAATGCGCAATGTATTGTGGGAACAACACGTGATGGAAGAACTACgaa
aaagtttcaaacaaaTTCAAGCAAAGAAACAGCAAGAAATTTACAGAAAT
TTCGCACTGGAAGAAGATGTATAAATGGCAAATATTTCTGTGATTCTAGT
TTTGCTTGCACTCTCTATTGCAACAATTCACGGGTTACCGAAACATAATG
AGCCAAGACAGACATTAGCAAACTATGCTTTAAGAGATTTTCAAGTCCAC
CTCTCGGCAAGAGACAATGGATGTGATTGCCATGGAGATTCATGTTATTG
TTGTGTCCATGCAGAAGTGGAGAAAATTCACCTCAACCACACAGTATGTG
TTGTTTTGGATTACATACCCGACGAATTGGGATTGGATGTGAAGCTCAAC
ATAGATGACGTCACTCTTTTCGTTGAAAAAGTCTCTCtgCGAAACCCACC
ACCACTCTGTGCCGGTATCCCACACTTGGAGAAATACGCAAGCGTGTGTA
TTGACTTCTTTAACATTGAATGGACAGAGAAAGTCGGAGGATGTATCAAA
CTCGATGCTAAATTGGCTGGAATCACTTTAGAAGAGATCAATATTGGTTG
TTTCTTTTATCCATTAACAAAACATCAAATGCGCAATGTATTGTGGGAAC
AACACGTGATGGAAGAACTACgaaaaagtttcaaacaaaTTCAAGCAAAG
AAACAGCAAGAAATTTACAGAAATTTCGCACTGGAAGAAGATGTATAAAT
GGCAAATATTTCTGTGATTCTAGTTTTGCTTGCACTCTCTATTGCAACAA
TTCACGGGTTACCGAAACATAATGAGCCAAGACAGACATTAGCAAACTAT
GCTTTAAGAGATTTTCAAGTCCACCTCTCGGCAAGAGACAATGGATGTGA
TTGCCATGGAGATTCATGTTATTGTTGTGTCCATGCAGAAGTGGAGAAAA
TTCACCTCAACCACACAGTATGTGTTGTTTTGGATTACATACCCGACGAA
TTGGGATTGGATGTGAAGCTCAACATAGATGACGTCACTCTTTTCGTTGA
AAAAGTCTCTCtgCGAAACCCACCACCACTCTGTGCCGGTATCCCACACT
TGGAGAAATACGCAAGCGTGTGTATTGACTTCTTTAACATTGAATGGACA
GAGAAAGTCGGAGGATGTATCAAACTCGATGCTAAATTGGCTGGAATCAC
TTTAGAAGAGATCAATATTGGTTGTTTCTTTTATCCATTAACAAAACATC
AAATGCGCAATGTATTGTGGGAACAACACGTGATGGAAGAACTACgaaaa
agtttcaaacaaaTTCAAGCAAAGAAACAGCAAGAAATTTACAGAAATTT
CGCACTGGAAGAAGATGTATAAATGGCAAATATTTCTGTGATTCTAGTTT
TGCTTGCACTCTCTATTGCAACAATTCACGGGTTACCGAAACATAATGAG
CCAAGACAGACATTAGCAAACTATGCTTTAAGAGATTTTCAAGTCCACCT
CTCGGCAAGAGACAATGGATGTGATTGCCATGGAGATTCATGTTATTGTT
GTGTCCATGCAGAAGTGGAGAAAATTCACCTCAACCACACAGTATGTGTT
GTTTTGGATTACATACCCGACGAATTGGGATTGGATGTGAAGCTCAACAT
AGATGACGTCACTCTTTTCGTTGAAAAAGTCTCTCtgCGAAACCCACCAC
CACTCTGTGCCGGTATCCCACACTTGGAGAAATACGCAAGCGTGTGTATT
GACTTCTTTAACATTGAATGGACAGAGAAAGTCGGAGGATGTATCAAACT
CGATGCTAAATTGGCTGGAATCACTTTAGAAGAGATCAATATTGGTTGTT
TCTTTTATCCATTAACAAAACATCAAATGCGCAATGTATTGTGGGAACAA
CACGTGATGGAAGAACTACgaaaaagtttcaaacaaaTTCAAGCAAAGAA
ACAGCAAGAAATTTACAGAAATTTCGCACTGGAAGAAGATGTATAAATGG
CAAATATTTCTGTGATTCTAGTTTTGCTTGCACTCTCTATTGCAACAATT
CACGGGTTACCGAAACATAATGAGCCAAGACAGACATTAGCAAACTATGC
TTTAAGAGATTTTCAAGTCCACCTCTCGGCAAGAGACAATGGATGTGATT
GCCATGGAGATTCATGTTATTGTTGTGTCCATGCAGAAGTGGAGAAAATT
CACCTCAACCACACAGTATGTGTTGTTTTGGATTACATACCCGACGAATT
GGGATTGGATGTGAAGCTCAACATAGATGACGTCACTCTTTTCGTTGAAA
AAGTCTCTCtgCGAAACCCACCACCACTCTGTGCCGGTATCCCACACTTG
GAGAAATACGCAAGCGTGTGTATTGACTTCTTTAACATTGAATGGACAGA
GAAAGTCGGAGGATGTATCAAACTCGATGCTAAATTGGCTGGAATCACTT
TAGAAGAGATCAATATTGGTTGTTTCTTTTATCCATTAACAAAACATCAA
ATGCGCAATGTATTGTGGGAACAACACGTGATGGAAGAACTACgaaaaag
tttcaaacaaaTTCAAGCAAAGAAACAGCAAGAAATTTACAGAAATTTCG
CACTGGAAGAAGATGTATAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00059833-exon-scaffold_331-1491911889:814468..814742 | TCONS_00059833-exon-scaffold_331-1491911889:814468..814742 | Clytia hemisphaerica | exon |
| TCONS_00059833-exon-scaffold_331-1510915933:814468..814742 | TCONS_00059833-exon-scaffold_331-1510915933:814468..814742 | Clytia hemisphaerica | exon |
| TCONS_00059833-exon-scaffold_331-1575043694:814468..814742 | TCONS_00059833-exon-scaffold_331-1575043694:814468..814742 | Clytia hemisphaerica | exon |
| TCONS_00059833-exon-scaffold_331-1491911889:814990..815097 | TCONS_00059833-exon-scaffold_331-1491911889:814990..815097 | Clytia hemisphaerica | exon |
| TCONS_00059833-exon-scaffold_331-1510915933:814990..815097 | TCONS_00059833-exon-scaffold_331-1510915933:814990..815097 | Clytia hemisphaerica | exon |
| TCONS_00059833-exon-scaffold_331-1575043694:814990..815097 | TCONS_00059833-exon-scaffold_331-1575043694:814990..815097 | Clytia hemisphaerica | exon |
| TCONS_00059833-exon-scaffold_331-1491911889:815771..815805 | TCONS_00059833-exon-scaffold_331-1491911889:815771..815805 | Clytia hemisphaerica | exon |
| TCONS_00059833-exon-scaffold_331-1510915933:815771..815805 | TCONS_00059833-exon-scaffold_331-1510915933:815771..815805 | Clytia hemisphaerica | exon |
| TCONS_00059833-exon-scaffold_331-1575043694:815771..815805 | TCONS_00059833-exon-scaffold_331-1575043694:815771..815805 | Clytia hemisphaerica | exon |
| TCONS_00059833-exon-scaffold_331-1491911889:816491..816548 | TCONS_00059833-exon-scaffold_331-1491911889:816491..816548 | Clytia hemisphaerica | exon |
| TCONS_00059833-exon-scaffold_331-1510915933:816491..816548 | TCONS_00059833-exon-scaffold_331-1510915933:816491..816548 | Clytia hemisphaerica | exon |
| TCONS_00059833-exon-scaffold_331-1575043694:816491..816548 | TCONS_00059833-exon-scaffold_331-1575043694:816491..816548 | Clytia hemisphaerica | exon |
| TCONS_00059833-exon-scaffold_331-1491911889:817076..818024 | TCONS_00059833-exon-scaffold_331-1491911889:817076..818024 | Clytia hemisphaerica | exon |
| TCONS_00059833-exon-scaffold_331-1510915933:817076..818024 | TCONS_00059833-exon-scaffold_331-1510915933:817076..818024 | Clytia hemisphaerica | exon |
| TCONS_00059833-exon-scaffold_331-1575043694:817076..818024 | TCONS_00059833-exon-scaffold_331-1575043694:817076..818024 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_331 | supercontig | scaffold_331:814468..818024 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR031941 | DUF4773 |
Blast
The following BLAST results are available for this feature:
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