TCONS_00059911 (transcript) - C. hemisphaerica

Overview
NameTCONS_00059911
Unique NameTCONS_00059911
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1662

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00059911 ID=TCONS_00059911|Name=TCONS_00059911|organism=Clytia hemisphaerica|type=transcript|length=1662bp
TCAGTAGAAGAAACCTAAAGAATATTATCAGACAGCCTCCCTTAAGATTG
AACAacctaaatattcaaaatggcaGGAGTtgtatttgaagatatttttg
atgtgaaagaCATTGATCCAGGAGGCAAGAAATTTGATAGAGTGTCAAGA
CTTCATTGTGAAAGTGAAAGTTTCAAAATGGATTTGATTTTGGATGTCAA
CACACAGATCTACCCAGTTGACCTTGGTGAAAAATTCCGTCTTGTTTTGG
CCACAACATTACGTGAGGATGGAACTCCAGATGATGGTGAATACAATTCA
GCAGATAATGCCCCATCAAGAGCTGACCAGTTTGAATATGTCATGCATGG
AAAAGTGTACAGGATAGACGCTGAAAATTCTGGTGGTGGTGATCATTTTG
GAAATAGAttATCAGCCTACGTTTCTTACGGTGGACTGTTGATGAGGCTA
CAAGGTGACGCGAATAATCTACACGATCAACTCAGAAAGACAAACGGATT
TCGAATTTGGAGAAATGAAACAtggaattttcaaataattacAGAACATT
TTATgtggattttttgaaatttgctaCATGATATTACTTGTATAAATCTA
TTATGGTTAACAAGATTGATAATCTAATGAACTCAAAATATTCACTTTCG
TCAAATTTTAAGTGCAAAAAAgttagagaaaaataaaaaaatactttttt
agcTTCCTCGGTTTTCCCACGTTATTCGTTTTAAACTTTATACATCTTCT
TCCAGTGCGAAATTTCTGTAAATTTCTTGCTGTTTCTTTGCTTGAAtttg
tttgaaactttttcGTAGTTCTTCCATCACGTGTTGTTCCCACAATACAT
TGCGCATTTGATGTTTTGTTAATGGATAAAAGAAACAACCAATATTGATC
TCTTCTAAAGTGATTCCAGCCAATTTAGCATCGAGTTTGATACATCCTCC
GACTTTCTCTGTCCATTCAATGTTAAAGAAGTCAATACACACGCTTGCGT
ATTTCTCCAAGTGTGGGATACCGGCACAGAGTGGTGGTGGGTTTCGcact
gaaaaataaattattgaGAGTCAAATCTACCTTGGAGAATTATTGCCTGG
AAAGCTAAGGCTATACTGAGCAATTTTTTCAGGCGCGTGCAATGCAATAA
TTGTTGCCAATTGCGCTGCACTCGAAAAGAGTTTAATTCTAGCCACCAAA
AATAAGTTTTgcaattaattttaaaattttaaatttccttCTCACAGCTT
ATTTCatccagccaaaaaaataatttgtattACGAGTGTTTTAAACAATA
ggacaaaagaagaaaagtaaaCATAAAGAGAATTTCTCCTCTTTTTTTGA
TCTGATCTATTTTGTTGCAGCCTcctgcaatttttttttgcgatattttt
ttgcgttttattGCGTTGCAGAAAAGATTGCAGAGAATTTGACTAGGcta
caatctttttttttcgggCGCTTGTTGCAAAGATTGTGTTGGAAGCGCCT
GAAAAAATTGCTCAGTATAGCCTTAGCTTAAGAgtggaaagaagaaaaca
aattttattttttgattttacttacGAGAGACTTTTTCAACGAAAAGAGT
GACGTCATCTATGTTGAGCTTCACATCCAATCCCTGAAAATATACGAAAA
CTTGTCTATTAA
Run BLAST on NCBI

transcript from alignment at scaffold_331:816462..821469-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00059911 ID=TCONS_00059911|Name=TCONS_00059911|organism=Clytia hemisphaerica|type=transcript|length=5008bp|location=Sequence derived from alignment at scaffold_331:816462..821469- (Clytia hemisphaerica)
TCAGTAGAAGAAACCTAAAGAATATTATCAGACAGCCTCCCTTAAGGTTT
TTGAATAGTCATTTTTCAACTTCCCAATGAGAAAAAATCTTCCCAAAGGG
GGATATATCCCAAAAATCTGAGCTAATTCTTTTTGTTTGGGATGATTATT
TTTAAATTAATTGGTCTAATGTGAATTTCTCCTACATAGCTTTCATATGA
TAACAAATCACAAATCAAAATGCCTGCTAAAACACTTACTCAATATACTC
AATAACCCAGGTCATTCTTTTGTTTAGAAATCACTCATTGGTGCGTCAAA
ATTTTCAATACAGTAGCTAGGAAGTATTTTCTTTTGCTACCAAAGGACCT
AAACAACCAAATAGGGACTCACAACCTTGTGCTCTTTAGAAATGTCACAT
GAGTCACATGAGACTTACTTAATGGTATTGATGGCTCTTTCGATAAACAA
TTCCTAAATACTGTATATTTTATCATGACATAATTTTTATTGCTTTCAAT
TACAGTACTCAGTTTTCCAAGTTTTCAATAAATTTTTACTTTCGTTAATT
TCATGTATGACAACTGGTGATGACATGATCTAAAAAGCTTTTTATCTCAT
TTTCAATTTTAGTTATATTTTAATTTCAAAATGAAATTGAAGTTTACAAT
TCTTTGACACTGTTTTTACCTCCATATGTACCGGTCCTGGTTGTCAAAAA
ATTTAAAAAAGTTTAAAATTGTTGAAATTTATATAGATATGAACAATTAT
TAACATTTAGATTGAACAACCTAAATATTCAAAATGGCAGGAGTTGTATT
TGAAGATATTTTTGATGTGAAAGACATTGATCCAGGAGGCAAGAAATTTG
ATAGAGGTATTATTCACAATGCTTTCAGGCCTTTCTTCTTGCCCTTTAAG
CGTCCGGTTATCGGACGCTACCCCTCCTGAAATTACTAAAATGGGCTCTT
CCAGAAAAAATCCGTTCATGGGGGGTGGAGGATATATTATTTTTTTCATG
AATTACCCCTGGACATTTTGATTTTTAACCCCCTGGACACGCGTTATACC
CCTGGACAAACATCAAATCAACCCCGTGGACACAAAAAATTACCCCTGGA
CATTGGAATTTACTCCCTGGACATTGCAATTTTTCAGTATTTTTTCAATA
CCCCTGGACAATTCATCCTCCACCCCCCATGAACAGATTTTTTCTGGAAG
AGCCCAATATTGGTAAAAACTGTCTTTTTAGTGGAACAACACCTTAAAAA
GTGCCATTTTTGGCCACTAACGGACGCTGTCGTGCCTTTCTAATATATGG
CCTGGCTTTTTGGAAATCAATCAGTTTGGGGTCTTTCTCTTCTTTCTTTC
TTGAAAAAGAGATACCATTGAGGAAAAAATTTGGTTGGAATTCGATCTGC
TATTTGATCTCCAAAAGGTTTTTGTTGTAGAAGGAATTTTATTAGACAAA
TAGCCTGAAAGAAATAATTTGGTAAGGGATCTGCGAGAATTTGATTTGTT
GATTACAAGAAATCTACCGGGTGCACCAAAATAAAGTATACAGGTTTGTC
AAGATATTGTGAGCTTCAGGATTTCAATTTTTTGTTCATTCTTTTTTCAT
CGTATAGAGGATGCTCTAACTTGAATTTTGAGCTATCATACTTTAGAATT
GAAAAAGTAGTTCGAAAGTTTTTTCTTTTTTTAACTGACTTTTTTTCCAT
GTCGAAATTTCAAAAAATCATTAAAAACAGCAATCACGCTATAAATAAGA
CAAAATGACAAAAACACAATTTCATTGTTTTTTTGATTCTTTTTTTTCTT
ATTTATATTTTGCCAACAGTTTCTCCATCTTATTTGCACATCATGAACAT
TTCCAACACGATTAAACTCAATGCAGACCCAAGTTCTTTGAGTCACTAGT
CAAGGAATGGTGATCTATTTTTTCAAACGTTTTTGTCATATAGCACACAC
ATAACATCAAAACCTCTCTTGGAGATTTATAAAACTTTTTTTCAGCTTTT
CCAAAAACATTACCCACTTGGGAATAGCTTGTTTTACCATATCTTTCAAA
TTTCGTAATGAGTTTTGATGAACACAGTTGCATTTTTGGTATTTTTACGT
GTAAAGAAGGTAATTGTCAAGAGAAAAGTATGGTCGCTGTTTTTGATGAT
TATCTAAAAATTCAACATTAAAAAAAGTCTTTTTTAAAAATGATTTTCGA
ACTACTTTTTCAAATTCAATATATGATTAGAGAGCATCCTTTATACGATG
AAAAAAGAATGAACAAAAAATTGAAATCCTGAAGCTCACAATATCTCGAC
AAACCTGTATACTCTTTTTTGGTGCACCCGATACATTAGGTTAAATCCAT
TTAAATTTCTTCCTCAATTATCTTTTCACCTCATCATTAAATTTTCAAAA
CATGCAAAAACACTGTAGGCTTCGATTATTGATAATTATTCCTCTAGAAG
AACCTATATATCTTTTCTATTNTGTAGGCTTCAATTATTGATAATTATTA
CTTGTCCTCTAGAAGAACCTATATCTTTTCTATTGTTATCAGTGTCAAGA
CTTCATTGTGAAAGTGAAAGTTTCAAAATGGATTTGATTTTGGATGTCAA
CACACAGATCTACCCAGTTGACCTTGGTGAAAAATTCCGTCTTGTTTTGG
CCACAACATTACGTGAGGATGGAACTCCAGATGATGGTGAATACAATTCA
GCAGATAATGCCCCATCAAGAGCTGACCAGTTTGAATATGTCATGCATGG
AAAAGTGTACAGGATAGACGCTGAAAATTCTGGTGGTGGTGATCATTTTG
GAAATAGATTGTAAGTTTTGTTTTTTGTCCCCTTGTTTTTGATTAATTTC
GGATAGGTCAAAATTTTCAATTTTTCAACATAACTTTTAGTTTTATATAC
CAAAATTTAAGTTAAGCTTTCCTCTATAGAAAGACAAAAGAATCAACAAA
AAAATCTTTAACTGTAAGCTCACAATATCCTGACAAACCTGGTGGATACT
TTTTTTGGTGCATCCGGCATATTTTCTTATTTTCAAGGGAAATGTATCAT
TTTTTGTATCATTTTTGGAAGAATTACACGCTTTTTTTTTATAAGAATAG
TGTACTTTGGTTGAGGGTGAGCATTATTCTTATTTTTCTATTGTTCTAAA
CAATAGGCCTATTGTTTTAAACCCGAAATCTCACCCTGATATTCTTATAG
AAGTTATTCTTATAAAAGAAAAAGCGTGTATTTGTGTATTCTTGAAGGAA
AATTAGGATGCCTTCTCTGTATTTTAGAACGAAAATAATAAATCCTTTAA
TGTATCTTGAAGGAAAATGAGAATTATTTCGTTGTATTTTTGAAGGAAAT
TATAAAATATCGATGTATTTTTGAAGGAAAAATTATTTCGTTGTATTCTT
GATGGGAAATTAAAAAATATTCCTTTGTATTTTTGAAGGAAAATCAAGAA
ATATTCCGTTGTATTTTTGAAGAAAAATGAAGTATAATTGCATGATTGTT
GAGAATCTTGGACGAACAAACTCTTGGCCACGTTTAATTTCATTATTATT
AAATATATTCTTTTCAGATCAGCCTACGTTTCTTACGGTGGACTGTTGAT
GAGGCTACAAGGTGACGCGAATAATCTACACGGTATGGAAGTTGATCAGC
TAATGTATTTGTTGATGAAAAAAATCGCCTTTTAAGGGATACAAATGGGA
TACTTTTGGTGTAAAAAGAACATTTAATGAGGAGAGGTCGAAGAAAGATC
ATTATTTTGAATCGCAGAGAACGATTTCGATGTTAGGCTTTTTGAAGCTA
TTGAAAAAGTGTTCATTTTAGATCAACTCAGAAAGACAAACGGATTTCGA
ATTTGGAGAAATGAAACATGGAATTTTCAAATAATTACAGAACATTTTAT
GTGGATTTTTTGAAATTTGCTACATGATATTACTTGTATAAATCTATTAT
GGTTAACAAGATTGATAATCTAATGAACTCAAAATATTCACTTTCGTCAA
ATTTTAAGTGCAAAAAAGTTAGAGAAAAATAAAAAAATACTTTTTTAGCT
TCCTCGGTTTTCCCACGTTATTCGTTTTAAACTTTATACATCTTCTTCCA
GTGCGAAATTTCTGTAAATTTCTTGCTGTTTCTTTGCTTGAATTTGTTTG
AAACTTTTTCGTAGTTCTTCCATCACGTGTTGTTCCCACAATACATTGCG
CATTTGATGTTTTGTTAATGGATAAAAGAAACAACCAATATTGATCTCTT
CTAAAGTGATTCCAGCCAATTTAGCATCGAGTTTGATACATCCTCCGACT
TTCTCTGTCCATTCAATGTTAAAGAAGTCAATACACACGCTTGCGTATTT
CTCCAAGTGTGGGATACCGGCACAGAGTGGTGGTGGGTTTCGCACTGAAA
AATAAATTATTGAGAGTCAAATCTACCTTGGAGAATTATTGCCTGGAAAG
CTAAGGCTATACTGAGCAATTTTTTCAGGCGCGTGCAATGCAATAATTGT
TGCCAATTGCGCTGCACTCGAAAAGAGTTTAATTCTAGCCACCAAAAATA
AGTTTTGCAATTAATTTTAAAATTTTAAATTTCCTTCTCACAGCTTATTT
CATCCAGCCAAAAAAATAATTTGTATTACGAGTGTTTTAAACAATAGGAC
AAAAGAAGAAAAGTAAACATAAAGAGAATTTCTCCTCTTTTTTTGATCTG
ATCTATTTTGTTGCAGCCTCCTGCAATTTTTTTTTGCGATATTTTTTTGC
GTTTTATTGCGTTGCAGAAAAGATTGCAGAGAATTTGACTAGGCTACAAT
CTTTTTTTTTCGGGCGCTTGTTGCAAAGATTGTGTTGGAAGCGCCTGAAA
AAATTGCTCAGTATAGCCTTAGCTTAAGAGTGGAAAGAAGAAAACAAATT
TTATTTTTTGATTTTACTTACGAGAGACTTTTTCAACGAAAAGAGTGACG
TCATCTATGTTGAGCTTCACATCCAATCCCTGAAAATATACGAAAACTTG
TCTATTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_037674XLOC_037674Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00059911-exon-scaffold_331-1575043694:821424..821469TCONS_00059911-exon-scaffold_331-1575043694:821424..821469Clytia hemisphaericaexon
TCONS_00059911-exon-scaffold_331-1575043694:820614..820709TCONS_00059911-exon-scaffold_331-1575043694:820614..820709Clytia hemisphaericaexon
TCONS_00059911-exon-scaffold_331-1575043694:818660..818927TCONS_00059911-exon-scaffold_331-1575043694:818660..818927Clytia hemisphaericaexon
TCONS_00059911-exon-scaffold_331-1575043694:817838..817902TCONS_00059911-exon-scaffold_331-1575043694:817838..817902Clytia hemisphaericaexon
TCONS_00059911-exon-scaffold_331-1575043694:816462..817648TCONS_00059911-exon-scaffold_331-1575043694:816462..817648Clytia hemisphaericaexon
TCONS_00059911-exon-scaffold_331-1510915933:821424..821469TCONS_00059911-exon-scaffold_331-1510915933:821424..821469Clytia hemisphaericaexon
TCONS_00059911-exon-scaffold_331-1510915933:820614..820709TCONS_00059911-exon-scaffold_331-1510915933:820614..820709Clytia hemisphaericaexon
TCONS_00059911-exon-scaffold_331-1510915933:818660..818927TCONS_00059911-exon-scaffold_331-1510915933:818660..818927Clytia hemisphaericaexon
TCONS_00059911-exon-scaffold_331-1510915933:817838..817902TCONS_00059911-exon-scaffold_331-1510915933:817838..817902Clytia hemisphaericaexon
TCONS_00059911-exon-scaffold_331-1510915933:816462..817648TCONS_00059911-exon-scaffold_331-1510915933:816462..817648Clytia hemisphaericaexon
TCONS_00059911-exon-scaffold_331-1491911889:821424..821469TCONS_00059911-exon-scaffold_331-1491911889:821424..821469Clytia hemisphaericaexon
TCONS_00059911-exon-scaffold_331-1491911889:820614..820709TCONS_00059911-exon-scaffold_331-1491911889:820614..820709Clytia hemisphaericaexon
TCONS_00059911-exon-scaffold_331-1491911889:818660..818927TCONS_00059911-exon-scaffold_331-1491911889:818660..818927Clytia hemisphaericaexon
TCONS_00059911-exon-scaffold_331-1491911889:817838..817902TCONS_00059911-exon-scaffold_331-1491911889:817838..817902Clytia hemisphaericaexon
TCONS_00059911-exon-scaffold_331-1491911889:816462..817648TCONS_00059911-exon-scaffold_331-1491911889:816462..817648Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_331supercontigscaffold_331:816462..821469 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
32.0089	28.7903	39.8266	26.312	0.141384	0.00344981	8.73193	10.9177	30.4769	25.8592	17.5701	22.6396	18.1968	17.4971	23.6711	22.6815	30.3672	29.5845	7.04697	10.8963	23.2524	18.9147	22.5218	21.5214	16.6871	7.30727	14.2786	8.64021	20.295	20.1747
Blast
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BLAST of TCONS_00059911 vs. Swiss-Prot (Human)
Match: RPAB3 (DNA-directed RNA polymerases I, II, and III subunit RPABC3 OS=Homo sapiens GN=POLR2H PE=1 SV=4)

HSP 1 Score: 221.476 bits (563), Expect = 1.119e-68
Identity = 108/135 (80.00%), Postives = 118/135 (87.41%), Query Frame = 1 
Query:   70 MAGVVFEDIFDVKDIDPGGKKFDRVSRLHCESESFKMDLILDVNTQIYPVDLGEKFRLVLATTLREDGTPDDGEYNSADNAPSRADQFEYVMHGKVYRIDAENSGGGDHFGNRLSAYVSYGGLLMRLQGDANNLH 474
            MAG++FEDIFDVKDIDP GKKFDRVSRLHCESESFKMDLILDVN QIYPVDLG+KFRLV+A+TL EDGT DDGEYN  D+ PSRADQFEYVM+GKVYRI+ + +        RLSAYVSYGGLLMRLQGDANNLH
Sbjct:    1 MAGILFEDIFDVKDIDPEGKKFDRVSRLHCESESFKMDLILDVNIQIYPVDLGDKFRLVIASTLYEDGTLDDGEYNPTDDRPSRADQFEYVMYGKVYRIEGDETST--EAATRLSAYVSYGGLLMRLQGDANNLH 133
The following BLAST results are available for this feature:
BLAST of TCONS_00059911 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
RPAB31.119e-6880.00DNA-directed RNA polymerases I, II, and III subuni... [more]
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