TCONS_00059842 (transcript) - C. hemisphaerica

Overview
NameTCONS_00059842
Unique NameTCONS_00059842
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1128

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00059842 ID=TCONS_00059842|Name=TCONS_00059842|organism=Clytia hemisphaerica|type=transcript|length=1128bp
ATGTCCTCTGCCATTCTTGCTATTGTCTGTTAAGTTAATATAATCCTTTC
TTTTCCGCTTATTTATACTATTTATACTTTACCACTGACCAGAGTTGGAG
GGTTCTCTTTTTTCAcactttcttattttttgcaaaatgtgcAGAAGCCG
TATATTACCAACTGACCTGCTGGAGGCTTCTCTTTTTCACACTTTCTTAT
TGTTTCAGATTTTCTGAGTTTGATGTCATTTCGAATGACGTCATAGTCAC
ATTggataaaaaaactgaaaaacaaatttttgagctaattaaatttgaaa
attaattgtTCATGCACGATTTCAGATGTATCATATTTCAATCTAGTGCA
GATTTAAGGTAGTCAAGAGTGCACCAAGTCCGTTTGTACTAGTGTCTAGT
ACAGTCTAATTCGCAGTCTGTTAGGTGTTTGCAAAATATGAATAATTCAA
TCGAGATCAGTGAAAATAGCCATCCAAACGATCTTTTCTATACACAACAG
AAGGATGGAGAGAAACCAAAGAAACGACCTGCCCTGAAAATGAGCCCTAT
AAAGTTTGAATTATCGGATGATGATTCAATGAACCCCgAGACGACTATGT
CCTCAGAAGAAACCAATGTTGAAGTTGACAAAAAGAATACGGAAGAtatt
aaaagtgtttttaaaGAACCTCATCTTGACACCGATATTGACGCCGGTAT
CAGAGTATTGAGATTTTTGAAGCATAAAAACGTCGgtgaaattttatcaa
atcatGAGAAGGGGGCTGTGAAAACCGAAGAAAAGGCGACGCAAACAGAA
GAAACAATGATGATGCGTCGGGACTTTGCGTTGTTAGTGAAAGACCTGGA
AAAAACGATTCAAGAACTAAAGTCCAATATCTCACAGCAAAAAAAACGCA
TTTATTCAGACATTCAATCCATAGAAGCGATagatgaaatgttggacgaT
ATTATGCCGAAGTGTGCCAAAATGGGATAGAGGCGAGTCTACAACCTCGA
TTTTCTTAGAAATCTTAGAAATCTActagaaattttcatcaaattattaA
TCCCTTTTTTGTAGATTAGGTATTATGGCCCTATATTAAAACATATGTAA
AAAAGATTGTAATTTTAACTAATCGAAG
Run BLAST on NCBI

protein sequence of TCONS_00059842-protein

>TCONS_00059842-protein ID=TCONS_00059842-protein|Name=TCONS_00059842-protein|organism=Clytia hemisphaerica|type=polypeptide|length=180bp
MNNSIEISENSHPNDLFYTQQKDGEKPKKRPALKMSPIKFELSDDDSMNP
ETTMSSEETNVEVDKKNTEDIKSVFKEPHLDTDIDAGIRVLRFLKHKNVG
EILSNHEKGAVKTEEKATQTEETMMMRRDFALLVKDLEKTIQELKSNISQ
QKKRIYSDIQSIEAIDEMLDDIMPKCAKMG
Run BLAST on NCBI

transcript from alignment at scaffold_331:877196..879022+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00059842 ID=TCONS_00059842|Name=TCONS_00059842|organism=Clytia hemisphaerica|type=transcript|length=1827bp|location=Sequence derived from alignment at scaffold_331:877196..879022+ (Clytia hemisphaerica)
ATGTCCTCTGCCATTCTTGCTATTGTCTGTTAAGTTAATATAATCCTTTC
TTTTCCGCTTATTTATACTATTTATACTTTACCACTGACCAGAGTTGGAG
GGTTCTCTTTTTTCAcactttcttattttttgcaaaatgtgcAGAAGCCG
TATATTACCAACTGACCTGCTGGAGGCTTCTCTTTTTCACACTTTCTTAT
TGTTTCAGATTTTCTGAGTTTGATGTCATTTCGAATGACGTCATAGTCAC
ATTggataaaaaaactgaaaaacaaatttttgagctaattaaatttgaaa
attaattgtTCATGCACGATTTCAGATGTATCATATTTCAATCTAGTGCA
GATTTAAGGTAGTCAAGAGTGCACCAAGTCCGTTTGTACTAGTGTCTAGT
ACAGTCTAATTCGCAGTCTGTTAGGTGTTTGCAAAATATGAATAATTCAA
TCGAGATCAGTGAAAATAGCCATCCAAACGATCTTTTCTATACACAACAG
AAGGTAAGTATAATATCGTAATACCTTACTGTTTTAAAATTCTCTcagca
atttttaatttttgcttctACTTTTTTACATCCCATTTTTATGTTCAGGA
AAGCTTTACGCTGTTATAGAAAATTGCTATATACGTTCTTTTTGTGACAT
CCAAAAACCAACTACTATTATTTTGCTTTCTTTGATATTAGGATGGAGAG
AAACCAAAGAAACGACCTGCCCTGAAAATGAGCCCTATAAAGTTTGAATT
ATCGGATGATGATTCAATGAACCCCGTAAGTAAATTCATGTTGCTGACAC
TAAAatatttgaatgttcttataaaaaaagtgtattaagaGCTTGATATT
CTTAATTGGCGGGCTAATTAGCTAATTAGCTAATTGAACATAGTCTTTCT
TCCCACTTTTGAATTAATaccttttctaaatatttatATCATTGTACATA
TATCTTGCATTTATTTGAATTGATATTAAGTAAAAGCTTCTAACCAAACT
TACATAATTTCAGGGATACACAGAGCCTAAGAAAAAAGCCTAAATGGCTC
CATCATCAATTGTAAgacaatttcaatttaattttaggAGACGACTATGT
CCTCAGAAGAAACCAATGTTGAAGTTGACAAAAAGAATACGGAAGAtatt
aaaagtgtttttaaagtGAGTCGGTTTAaactatttcgaaaaaaaatgtt
gattttgatttgaaaatgagGCTcgttaaaacttttaaaagataCAATTA
TGAATTAAAGGACTGCTGTATTTggtgataggcaagaacaagtaaaatta
taaaacatacaacttttaaaaaaatacaaaagctAAGAAAAGCTAAATAT
TCTTTTGATTTCAGGAACCTCATCTTGACACCGATATTGACGCCGGTATC
AGAGTATTGAGATTTTTGAAGCATAAAAACGTCGgtgaaattttatcaaa
tcatGAGAAGGGGGCTGTGAAAACCGAAGAAAAGGCGACGCAAACAGAAG
AAACAATGATGATGCGTCGGGACTTTGCGTTGTTAGTGAAAGACCTGGAA
AAAACGATTCAAGAACTAAAGTCCAATATCTCACAGCAAAAAAAACGCAT
TTATTCAGACATTCAATCCATAGAAGCGATagatgaaatgttggacgaTA
TTATGCCGAAGTGTGCCAAAATGGGATAGAGGCGAGTCTACAACCTCGAT
TTTCTTAGAAATCTTAGAAATCTActagaaattttcatcaaattattaAT
CCCTTTTTTGTAGATTAGGTATTATGGCCCTATATTAAAACATATGTAAA
AAAGATTGTAATTTTAACTAATCGAAG

Coding sequence (CDS) from alignment at scaffold_331:877196..879022+

>TCONS_00059842 ID=TCONS_00059842|Name=TCONS_00059842|organism=Clytia hemisphaerica|type=CDS|length=2172bp|location=Sequence derived from alignment at scaffold_331:877196..879022+ (Clytia hemisphaerica)
ATGAATAATTCAATCGAGATCAGTGAAAATAGCCATCCAAACGATCTTTT
CTATACACAACAGAAGGATGGAGAGAAACCAAAGAAACGACCTGCCCTGA
AAATGAGCCCTATAAAGTTTGAATTATCGGATGATGATTCAATGAACCCC
gAGACGACTATGTCCTCAGAAGAAACCAATGTTGAAGTTGACAAAAAGAA
TACGGAAGAtattaaaagtgtttttaaaGAACCTCATCTTGACACCGATA
TTGACGCCGGTATCAGAGTATTGAGATTTTTGAAGCATAAAAACGTCGgt
gaaattttatcaaatcatGAGAAGGGGGCTGTGAAAACCGAAGAAAAGGC
GACGCAAACAGAAGAAACAATGATGATGCGTCGGGACTTTGCGTTGTTAG
TGAAAGACCTGGAAAAAACGATTCAAGAACTAAAGTCCAATATCTCACAG
CAAAAAAAACGCATTTATTCAGACATTCAATCCATAGAAGCGATagatga
aatgttggacgaTATTATGCCGAAGTGTGCCAAAATGGGATAGATGAATA
ATTCAATCGAGATCAGTGAAAATAGCCATCCAAACGATCTTTTCTATACA
CAACAGAAGGATGGAGAGAAACCAAAGAAACGACCTGCCCTGAAAATGAG
CCCTATAAAGTTTGAATTATCGGATGATGATTCAATGAACCCCgAGACGA
CTATGTCCTCAGAAGAAACCAATGTTGAAGTTGACAAAAAGAATACGGAA
GAtattaaaagtgtttttaaaGAACCTCATCTTGACACCGATATTGACGC
CGGTATCAGAGTATTGAGATTTTTGAAGCATAAAAACGTCGgtgaaattt
tatcaaatcatGAGAAGGGGGCTGTGAAAACCGAAGAAAAGGCGACGCAA
ACAGAAGAAACAATGATGATGCGTCGGGACTTTGCGTTGTTAGTGAAAGA
CCTGGAAAAAACGATTCAAGAACTAAAGTCCAATATCTCACAGCAAAAAA
AACGCATTTATTCAGACATTCAATCCATAGAAGCGATagatgaaatgttg
gacgaTATTATGCCGAAGTGTGCCAAAATGGGATAGATGAATAATTCAAT
CGAGATCAGTGAAAATAGCCATCCAAACGATCTTTTCTATACACAACAGA
AGGATGGAGAGAAACCAAAGAAACGACCTGCCCTGAAAATGAGCCCTATA
AAGTTTGAATTATCGGATGATGATTCAATGAACCCCgAGACGACTATGTC
CTCAGAAGAAACCAATGTTGAAGTTGACAAAAAGAATACGGAAGAtatta
aaagtgtttttaaaGAACCTCATCTTGACACCGATATTGACGCCGGTATC
AGAGTATTGAGATTTTTGAAGCATAAAAACGTCGgtgaaattttatcaaa
tcatGAGAAGGGGGCTGTGAAAACCGAAGAAAAGGCGACGCAAACAGAAG
AAACAATGATGATGCGTCGGGACTTTGCGTTGTTAGTGAAAGACCTGGAA
AAAACGATTCAAGAACTAAAGTCCAATATCTCACAGCAAAAAAAACGCAT
TTATTCAGACATTCAATCCATAGAAGCGATagatgaaatgttggacgaTA
TTATGCCGAAGTGTGCCAAAATGGGATAGATGAATAATTCAATCGAGATC
AGTGAAAATAGCCATCCAAACGATCTTTTCTATACACAACAGAAGGATGG
AGAGAAACCAAAGAAACGACCTGCCCTGAAAATGAGCCCTATAAAGTTTG
AATTATCGGATGATGATTCAATGAACCCCgAGACGACTATGTCCTCAGAA
GAAACCAATGTTGAAGTTGACAAAAAGAATACGGAAGAtattaaaagtgt
ttttaaaGAACCTCATCTTGACACCGATATTGACGCCGGTATCAGAGTAT
TGAGATTTTTGAAGCATAAAAACGTCGgtgaaattttatcaaatcatGAG
AAGGGGGCTGTGAAAACCGAAGAAAAGGCGACGCAAACAGAAGAAACAAT
GATGATGCGTCGGGACTTTGCGTTGTTAGTGAAAGACCTGGAAAAAACGA
TTCAAGAACTAAAGTCCAATATCTCACAGCAAAAAAAACGCATTTATTCA
GACATTCAATCCATAGAAGCGATagatgaaatgttggacgaTATTATGCC
GAAGTGTGCCAAAATGGGATAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_037639XLOC_037639Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00059842-exon-scaffold_331-1491911889:877196..877698TCONS_00059842-exon-scaffold_331-1491911889:877196..877698Clytia hemisphaericaexon
TCONS_00059842-exon-scaffold_331-1510915933:877196..877698TCONS_00059842-exon-scaffold_331-1510915933:877196..877698Clytia hemisphaericaexon
TCONS_00059842-exon-scaffold_331-1575043694:877196..877698TCONS_00059842-exon-scaffold_331-1575043694:877196..877698Clytia hemisphaericaexon
TCONS_00059842-exon-scaffold_331-1491911889:877887..877970TCONS_00059842-exon-scaffold_331-1491911889:877887..877970Clytia hemisphaericaexon
TCONS_00059842-exon-scaffold_331-1510915933:877887..877970TCONS_00059842-exon-scaffold_331-1510915933:877887..877970Clytia hemisphaericaexon
TCONS_00059842-exon-scaffold_331-1575043694:877887..877970TCONS_00059842-exon-scaffold_331-1575043694:877887..877970Clytia hemisphaericaexon
TCONS_00059842-exon-scaffold_331-1491911889:878283..878360TCONS_00059842-exon-scaffold_331-1491911889:878283..878360Clytia hemisphaericaexon
TCONS_00059842-exon-scaffold_331-1510915933:878283..878360TCONS_00059842-exon-scaffold_331-1510915933:878283..878360Clytia hemisphaericaexon
TCONS_00059842-exon-scaffold_331-1575043694:878283..878360TCONS_00059842-exon-scaffold_331-1575043694:878283..878360Clytia hemisphaericaexon
TCONS_00059842-exon-scaffold_331-1491911889:878560..879022TCONS_00059842-exon-scaffold_331-1491911889:878560..879022Clytia hemisphaericaexon
TCONS_00059842-exon-scaffold_331-1510915933:878560..879022TCONS_00059842-exon-scaffold_331-1510915933:878560..879022Clytia hemisphaericaexon
TCONS_00059842-exon-scaffold_331-1575043694:878560..879022TCONS_00059842-exon-scaffold_331-1575043694:878560..879022Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00059842-proteinTCONS_00059842-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_331supercontigscaffold_331:877196..879022 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0386047	0	0	0.0427637	0.208243	0.329112	1.09191	0.557584	1.04101	1.24916	0.743123	0.334237	0.256748	0.266635	0.109605	0.0940985	0.173883	0.029704	0	0	0	0	0.0442634	0	0.165793	0.110975	0.105869	0.0564934	0.0428482	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00059842 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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