TCONS_00059843 (transcript) - C. hemisphaerica

Overview
NameTCONS_00059843
Unique NameTCONS_00059843
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1839

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00059843 ID=TCONS_00059843|Name=TCONS_00059843|organism=Clytia hemisphaerica|type=transcript|length=1839bp
ttagaaattataaaatgaaaaaatattttccatgaatTAAAAAACTAATA
TGGAAGATTCAATGACAGAAGAATCTAAAGTAGGTCAAATCAAGACTGAA
GAAACTCTGAAGAAACAGTCAAAAGAAGAAGTCGATGAttcagaagaaga
agaaagtcaATCTGACGAAGATGCTAAAAATACTTTAGACAGCGAAACAC
ATTTGAATGGACACACAGATCTGAGTAATGACAAAGGTACTTTAGTTAAA
GATGAAGTCGATATTCAACCAAAAACACAAAATGATTCGATGAAAGAGCG
TATAGAATCAGATATCATTGAACAACCACTGGCAGAACCACCACAAATTA
CTAGTAAACCATCAGACTATGCTGACTTTGCAGCTATTCATTCGTTTTTG
ACAATGTTTGGAGTTGAGCTTGATTTGCCAAATGTTTCGTTGATTGACCT
TGAGCAGATTTTCTCGACGAACCATAgactttcttttgaaaaagATAACA
TTGGTATATTGGAAGTGTTGTACATGAAACTGTTTCGGAAGTTGAAACAG
TCTTATCGTTATTCACCAGTTGCAAACGTGACGTCTGATCGACTTTTCAA
AACTATCGTCCGCTATGTGTACTTGGTGCGGTTTGAGCAAGCTGAACAAG
TACAGTTTCAAGGTTATGAAAGTCTCTCGACTGAGCAAAGACTGAAGCTT
TTCAAGAGTTTATGCGAGATCCAGTTCGAAGAGAACTCAAAATTCCGCTC
AACACTTCAAGAGACATTTAAAGGAGATAATGCAAGTGCATTACGTTTGG
AACCTTTCGGTGTGGAGCAAGAAGGTTACCATATCTGGTTTCAAGAGGAT
CAagattgtaatttcattgtttatGCGTCGGGTGCGACCAACGAAAATAT
TGAAGAGTGGGACGTCCGTGCAAGGACTTTCGAAGAACTTGAGGTTTACA
TTGCTGATCTGAAGAGTAGGACAGAAGTCAATCCAAAGGATACAGTTGAG
GAACGTTCAAAAGTCGTTCGAGAAGAGAAGGAAAAGGAGAAAGAGAAAAG
ACGCCAAGAAAGAGAGGAGAAAAGGAAAGCGGCTGCTGAGCTAGCTGCCA
AAAAGAAGAAAGGCAAAGGGCGTGGCCGACGTGCAAAAGAAGTTGCACCA
GTGGAAATTTCTTCCAGTGAAAGTGAAGAAGAGGAAGACGATGGTTGTGT
CAAATGTCTTCGCAATAAACAAGATGACCAGGTTTTACTCTGCGATACGT
GCGATGCTGGATACCACGCCACGTGTTTAGTGCCGCCCGTTACCACTATT
CCGGAAGGAGACTGGTATGGGCCTCATTGTATGCATGTGACGTTAGCTCA
GAAATTGGCCGAACGAATGGCTGCTATACGCAAAAAGGTCCAAGCCAAAG
AAAGAAAGTCAAGAAGAATGCAATTTTATGGTATCAGACAATCAAATATT
ATTGAATCGAATTCAAATGAGCCACAGACAGGGCGGCGGGCGGGCCGCAC
GAAGGTGGACTACAGATTTTCGGAATACGATCGAACTGTTGAGGATGCAT
TGAGGAGttctgaagaagaaaacgacCGGCCGTCAAGACGCTCAAATGGT
CTTTCAAGAATGAGATGAAGTTAGATCAtcacaaattacgcatgcgtaac
tCGTAGTTCAGTTTACTTACATTGCTCTTaccaaaaaaagtttattcCTC
AATTTTTGTATTGCCGTTTGATACgataataaattttgtagtttaaagag
attttattagaaaattttattacttgagaaaagaaaattttaaatattta
gcagataaaatattttcttttccaataattttttgCAAG
Run BLAST on NCBI

transcript from alignment at scaffold_331:897514..905811+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00059843 ID=TCONS_00059843|Name=TCONS_00059843|organism=Clytia hemisphaerica|type=transcript|length=8298bp|location=Sequence derived from alignment at scaffold_331:897514..905811+ (Clytia hemisphaerica)
ttagaaattataaaatgaaaaaatattttccatgaatTAAAAAACTAATA TGGAAGATTCAATGACAGAAGAATCTAAAGTAGGTCAAATCAAGACTGAA GAAACTCTGAAGAAACAGTCAAAAGAAGAAGTCGATGAttcagaagaaga agaaagtcaATCTGACGAAGATGCTAAAAATACTTTAGACAGCGAAACAC ATTTGAATGGACACACAGATCTGAGTAATGACAAAGGTACTTTAGTTAAA GATGAAGTCGATATTCAACCAAAAACACAAAATGATTCGATGAAAGAGCG TATAGAATCAGATATCATTGAACAACCACTGGCAGAACCACCACAAATTA CTAGTAAACCATCAGACTATGCTGACTTTGCAGCTATTCATTCGTTTTTG ACAATGTTTGGAGTTGAGCTTGATTTGCCAAATGTTTCGTTGATTGACCT TGAGCAGATTTTCTCGACGAACCATAgactttcttttgaaaaaggttaga aaaattatttttaatgtctCATACCCTAGTTATAATGATAATGATCATTG TCTTTTAAATAACATTTGAAGAGGTCCTTTGTGAGTCAAATTGAGTATCT GAAGtcttttaagatattttttatgATAATGGAAGaaagttctttctttt gtttaaaaatgctgtgtaagcaaattgTAGGAGGCACCTTAAACGAAATC CTTTAATATAATAGCTGCTTGTATTTATCTGTTTTGGCTCTGCTAAGCAT CAATATTCAGGATATCCAATAGGGCTAATCATTTGAAATGTTGCATCGTC TAGTCTAGTTCTCACGAGACTGAAAAGGTTTTATGGTATTGCAAACCTTT TTTTTTAGATAACATTGGTATATTGGAAGTGTTGTACATGAAACTGTTTC GGAAGTTGAAACAGTCTTATCGTTATTCACCAGTTGCAAACGTGACGTCT GATCGACTTTTCAAAACTATCGTCCGCGTAAGTAGTTCTCTGTTtcataa aaacatatttttaacaACCATAACCTAATATAAAGTGTGtaaaggttgtg ggttcgacctCCGTCGGCTGGGTCATACTAAAGATCTTAAAATGGCACTT GATGTCTCTCTGCTTTATTCTCCGTAACCAACGATAATGTTTAAGTGGAA AAATCAAGACGTCCTCCGCTACCTTCAAGTAGTGTAGTCAGCAAAGGAAA ATAAAGCCTTTGGTTCACCCTTGACTGCGGTCGTAACACTAACACTAAAA CtaacacaaaatttttaaatcgaGCCCCACTAAAATTACAGTCCCTATCC ACTAACGATTATCACGTTTTTGAGTTTAATGGAATATTATTTTTGTTGAA CCTATTCGCCATATTTAAAATATGGAATATGTTGTTTTTAGTATGTGTAC TTGGTGCGGTTTGAGCAAGCTGAACAAGTACAGTTTCAAGGTTATGAAAG TCTCTCGACTGAGCAAAGACTGAAGCTTTTCAAGGTTTGTGAATTACTTC GAAACTTTTTGTGCTATTCATAACAAAGTTTTGAGATGGTATAAATACTC AATCTTTAATACTTTTTCGCATCAAACGAGTTGCATCAACAACAAAGAGA CTAACAATGTAACAAAgcttgtacacgttttttctatCAACTCCTCCAGT TTTCAGGTCAGGGCTGAGGTTGCTAAGCATTCTagatcattttctgaaaa acttgCTTTCAGTTTCACCACCtttgatattataccatattattgggtca agggctatcgtttgccatgcttagtttataatatttaaaaagcTTATACT TTACGAGTAATAGTAAAAAAATAATTGGCTAATTTCAGGGCTCCAGCCTT AGCAACCCGGTTGTTTATAATGAAAATGTGTACAGTAAGATATTGAAATT TCCAATAAAACGTTTTAATTATAATTTGTTCAATAGAGTTTATGCGAGAT CCAGTTCGAAGAGAACTCAAAATTCCGCTCAACACTTCAAGAGACATTTA AAGGAGATAATGCAAGTGCATTACGTTTGGAACCTTTCGGTGTGGAGCAA GAAGGTTACCATATCTGGTTTCAAGAGGTACCAACGATTAGTTTGTTTCG CAAACCTTTAAAAGTTGATATCAGTTGGGAACATTTAACTTTGTACATAT AGCGAGATTCAGGACTGCTTTTCACATtagaattgttatttttattattt attatttgtaCTATAGTCaagtctctctaattcgaacctctactattcga atctgtttataattcgaactaaaatattggccCTCTCAGTCAGAAATTAG tatataaaatactttctataattcaaatcttcttctaattcgaagaaaat ttttaatcccttgaagatcgaattagggAGAATCAGTTGTGGTAATAAAA TTACAACGTTCTGAGCTAGTACGGAATATTTTCAATGAACCTGGAgctat tttcatcaaaacattctttctttttcacgTAATTTTAGGATCAagattgt aatttcattgtttatGCGTCGGGTGCGACCAACGAAAATATTGAAGAGTG GGACGTCCGTGCAAGGTTTGGAATATACTCCTTATTGGTGGTCTTATTTA GTAACAACGAATAGCGAAATATAAAAGCAAAACCCGCCATATCCACCATG TTTGACTGGAAAGTGGTATCCTAATTGTAGCACTACTCGATGTGGGTCAA TTTGTAATTCAATGAANAGCGAAAtataaattctaattatttGGTTCTTC GCCTCAAGTACTTATTCACACCAATCAATACATGAAGCTTGCTAAGAATT CACTACCCTAGAATCTATGATTTGCTAGAGTTAATTCATCATTCGCCAGc ctatcaaaaacaaagcaaaacccgCCATATCCACCATGTTTGACTGGAAA GTGGTATCCTAATTGTAGCACTACTCGATGTGGGTCAATTTGTAATTCAA TGAAGTTTTCCGCCTAAATTTTCTTCACCAacattgagtagtgctaccat tagtgTGCCACTTTTAAAAAGTTCCTTTCAAAAATACTCCgatcaaaaat tttgcttggcagggATTGAAAAACTGTGTCCAAAGTCCTTCTAcatttaa tttattttgaactttttacagGACTTTCGAAGAACTTGAGGTTTACATTG CTGATCTGAAGAGTAGGACAGAAGTCAATCCAAAGGATACAGTTGAGGAA CGTTCAAAAGTCGTTCGAGAAGAGAAGGAAAAGGAGAAAGAGAAAAGACG CCAAGAAAGAGAGGAGAAAAGGAAAGCGGCTGCTGAGCTAGCTGCCAAAA AGAAGAAAGGCAAAGGGCGTGGCCGACGTGCAAAAGGTCAGTagctttaa ccctttaagtgccacggtccttttttctaagttttgcttcgccctcctat atagcccatgtccgATATACCCggcattggcacttaaaggttTAATGTTA ATGATAATGATTACTAGTAGCATAAAACTTTTTGACTGGAAGATTTTTTA CCTTTATCAAGATGATATAAAACCTGCCAGACTATAAATTACAGAGGCTT GATTGAGATTCGAAAGTTTCATCGttaaaggttttaattttaCATTTCGT GTCTCCCTAGTCAGCCCTAGAGCCGTTTTTTTCTCtctctgaccaatctt gctccacatacgtgtcaattcaatgtgaaaaagcttgtaaattaaaattg atgaataaacAAACGATAtcgctcttatttaaaaacgaaACCTTTAATTC ATCGATTGTGTATCTGATCTTCCATAGAAGTTGCACCAGTGGAAATTTCT TCCAGTGAAAGTGAAGAAGAGGAAGACGATGGTTGTGTCAAATGTCTTCG CAATAAACAAGATGACCAGGTTTGTTTATGCccttattgccgacccaaaa aaatatcagcgttttgattggtcgagagcatcgagatatttgcgatattt catatttctttagtctggaaatatgaccgcgttgactTTTGGGGGACTGG GTAAGCGGCGGGAGAAAAATCAAAACAAAAaagccgaaaagaactgactt tcggagaaactggcttgggaatcaaagggaaaaacgcaacaaaaatatgt tcagattaacttttactttgcaGTTCTttcataaaagacactaaaatcaa atctgataaactaagaaattgtaaaactacttgacacgacccaaatattt tcagcttttggcaTAAAATTCGTCCGTAtgtaaccaaacagttttttatc aatgcatacaaaaaacttgagattcttgaatgtttgccaataagatttct cataacatagcaagggaagtggtgatatttgaaaaagttctctcctaatt ctcctTCTCGACGAGGTACGTCCTTGAATTGTAAACTCAACAATCATtta tacatcttccttctaaaattcgaaacaataaagcttgacgataatcaaaa aagtatccaaattgttttgctcttgaaaaaaatgtcgttctttaaccatt attacaagcatacatttccatcatgctgcatcatggaactcctttcctct gctattcttttccatgcatcgaaacaaaaacatagaaaaagactgaatgt tatcgaTCTGATTTATCCAATGATGaagggtttcttctctatcgaaacaa tactgtacaccatctgcattttgaattatcaatctagaaactttcaaata catctctgaaaaatctNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNtttcaaatacatctctgaaaaatct gcaactcttcaaaacaaaacttctcgatcgtaaaatgatcgaaaatgctc ctctgttttgtttttgtgtgaatattggcggcgggaacatatcgaatgtt ttattgttcgaatccaacgttcgaattagattttcgaataaaaacattcg aaactacacagaagaaagaatcaaggcggaagtaagttttaaaacaaaaa caaaaagaaatttatatcaggacaatttttttgagtcgacaataaattag ttatcacatgacttctcgtgcaatactcgatattttactcgttccgagat tttaccgagatttttcctcgcctaaaggctcggaaaaatattacggaaaa atctcggaactcgtaaaatatttctcgtattgcactcgaagtcatgcgat aactagtacttaTTTGGATTTCCTTATGCGTCTAACTTTTGCACTCCTTC GGGGTGGGTTCCTCAAATCCCTTGGTAATAAGCAAGATGACCAGGTCGAA GATTCGTCAaaccttaaaaaaattttgatgtggCTATAATATTTTTGTAC TAAATAAGGAAATTACCGTAACCCACAATTTTCTATATACTTAGCTCTTT ACGATTTGCAATTACTCTCCATGAGAGATAATCTAAAGGGTTATAAGTTA GTGACAATCTTCCCTTCTGTGTTAAAATCTCCCTGAATTCACACTTACGT ATGTGCGTCATTTCCATGTTTGTTTTTTCAACAGGTTTTACTCTGCGATA CGTGCGATGCTGGATACCACGCCACGTGTTTAGTGCCGCCCGTTACCACT ATTCCGGAAGGAGACTGGTATGGGCCTCATTGTATGCATGTGACGTTAGC TCAGAAATTGGCCGAACGAATGGCTGCTATACGCAAAAAGGTCCAAGCCA AAGAAAGAAAGTCAAGAAGGTAACCAGGCCAAGCCTAGCCTTACATAGAA CTATGGCCAACtgtctaattcgaatctctaattttcaaatttttctacaa TTCGAACTAATAATATTAGNCTAGCCTTACACAGAACTATGGCCAACtgt ctaattcgaatctctaattttcaaatttttctacaaTTCGAACTAATAAT ATTAGTTCCCCCAGCTGGAAAGTCGTGCAAagtactctctgtaattcaaa tctttctccaATTGttagaaaattctttaaaatcgaattagagagtgttg CACATATTTTACTAGTTAtcatagtagggggaattttgttcgattttttg aaatcgctcgattgttttgttagaagcatttgttatacatttttggaaag ctaaggggtaggggaatcgaaattacgatgtttccaatttttttttcgga cactttggtgtgattttcggacaaatatgacggtctcaggcaaaaatcat agggttaaaaattaatgaaaattttagcttgagaaaacggagacctattg tatatttttggaaagctctcaaaaaattaagatttgagatatattgcaag tataggtgatttcagtacctaactcgagatattgagcttcaaaaagcgca aaaactggacaaaacagctgtttctggctgaaaaacacggttttcaaggg ttaatatctcgagttaggtacataaatcacctatacttgcaatatatctc taatcctaattttttgagagctttccaaaaatatacaacaggtctccgtt ttctcNNNNNctccgttttctcaagctaaaattttcattaatttttaacc ctatgatttttgcctgagaccgtcatatttgtccgaaaatcacaccaaag tgtccgagaaaaaaaattggaaacatcgtaatttcgattcccctacccct tagctttcaaaaaatgtataacaagtgcttctaacaaaacaatcgagcga ttttataaaatgccctctactatcaCTACTGATTTTCTTCACGTCATGTT TCATAGCCTAAGGCGaagcttttctatttttttaaactGGTTTATTTCAA AGAGTCATGTTGCCTGATATAGTTCTCCAAATTCTAGcgtgaaataaagc aaaaagtaatcgTCACGTAAAACAATTATAACACCCTGTCACATGCCCTA TAAGCGACTCAAGTCTTTGCCCTCCACCTAGATTAAGAGGGATAGATTTT GGAGCAAAGACCAATTTGTtggtggaaatttttttggaGTCATTGGGAAT AAGAGAGAGGAAAATGATTATCTACATCATCATGAGACAGGAACCGATTC TTTATGTTGAATGGCCTTTTTATACAACCTGGGGGACTCTGGAGCCAGGC TCgggatggaaaattttgatTCTAGTTTTGGGGTAACACTAACTGACTCT GAAAGACCCTGcttagaaaatgaaagtaaGGGAGTAACTTTTCTTCGATT TCTTTTAGAATGCAATTTTATGGTATCAGACAATCAAATATTATTGAATC GGTGAGTAGTTTTTTATCCTCGGGACACTTTTTAATCTGAAATGTAAATG TAAAAGCATATTATATGCTTTTTCTGTCTCTATCATGGTTTCCAACAAGA GCCTTTTAATTTCCAATTTATAGCCAGTCAAAGATTGGACCTGTAGGGAT CCTGGGACTGAAAAAGTTAACTAAAAACAGCGTCGAAATTcacaaatttg aagaaaatacagGAAAAATTTATTTCGGACCTTGCACTTTTAGAATTCAA ATGAGCCACAGACAGGGCGGCGGGCGGGCCGCACGAAGGTGGACTACAGA TTTTCGGAATACGATCGAACTGTTGAGGATGCATTGAGGAGttctgaaga agaaaacgacCGGCCGTCAAGACGCTCAAATGGTCTTTCAAGGTATAGcc ttcattttttgtttgttttagatttaagttttttaattattttaagtCGT TACCGGACGAGTGTAGTTAATTTCGCGTAAAggaaaagattcgaattact aTTTGCCAGTTGTTGAATGAAAAGTGTATCTGCTAAAAAGATTAGTTCGT TAGGCTCTATGATCTGCAGCAGAGACAAAAATCTGGGGTCAGTTATAgtt tttttgatagactggactAAAGTTATAGCCATTTTTTCTCCGCttcagat tatattgagacagacttaagTTGGTATGTTTTGTTTTACAGTGTGTCTTT TTAGTTCTAAAGCCTCGGCGATCAATTTTATCAAGAtaaaattttttctc tcgcgaATTACCTTTGCCTTGCCTCTAACCTTTCTGTAAATTGTAAACGT TATTGCTTTCTTTTTAGAATGAGATGAAGTTAGATCAtcacaaattacgc atgcgtaactCGTAGTTCAGTTTACTTACATTGCTCTTaccaaaaaaagt ttattcCTCAATTTTTGTATTGCCGTTTGATACgataataaattttgtag tttaaagagattttattagaaaattttattacttgagaaaagaaaatttt aaatatttagcagataaaatattttcttttccaataattttttgCAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_037640XLOC_037640Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00059843-exon-scaffold_331-1491911889:897514..898007TCONS_00059843-exon-scaffold_331-1491911889:897514..898007Clytia hemisphaericaexon
TCONS_00059843-exon-scaffold_331-1510915933:897514..898007TCONS_00059843-exon-scaffold_331-1510915933:897514..898007Clytia hemisphaericaexon
TCONS_00059843-exon-scaffold_331-1575043694:897514..898007TCONS_00059843-exon-scaffold_331-1575043694:897514..898007Clytia hemisphaericaexon
TCONS_00059843-exon-scaffold_331-1491911889:898372..898490TCONS_00059843-exon-scaffold_331-1491911889:898372..898490Clytia hemisphaericaexon
TCONS_00059843-exon-scaffold_331-1510915933:898372..898490TCONS_00059843-exon-scaffold_331-1510915933:898372..898490Clytia hemisphaericaexon
TCONS_00059843-exon-scaffold_331-1575043694:898372..898490TCONS_00059843-exon-scaffold_331-1575043694:898372..898490Clytia hemisphaericaexon
TCONS_00059843-exon-scaffold_331-1491911889:898905..898997TCONS_00059843-exon-scaffold_331-1491911889:898905..898997Clytia hemisphaericaexon
TCONS_00059843-exon-scaffold_331-1510915933:898905..898997TCONS_00059843-exon-scaffold_331-1510915933:898905..898997Clytia hemisphaericaexon
TCONS_00059843-exon-scaffold_331-1575043694:898905..898997TCONS_00059843-exon-scaffold_331-1575043694:898905..898997Clytia hemisphaericaexon
TCONS_00059843-exon-scaffold_331-1491911889:899450..899590TCONS_00059843-exon-scaffold_331-1491911889:899450..899590Clytia hemisphaericaexon
TCONS_00059843-exon-scaffold_331-1510915933:899450..899590TCONS_00059843-exon-scaffold_331-1510915933:899450..899590Clytia hemisphaericaexon
TCONS_00059843-exon-scaffold_331-1575043694:899450..899590TCONS_00059843-exon-scaffold_331-1575043694:899450..899590Clytia hemisphaericaexon
TCONS_00059843-exon-scaffold_331-1491911889:900002..900078TCONS_00059843-exon-scaffold_331-1491911889:900002..900078Clytia hemisphaericaexon
TCONS_00059843-exon-scaffold_331-1510915933:900002..900078TCONS_00059843-exon-scaffold_331-1510915933:900002..900078Clytia hemisphaericaexon
TCONS_00059843-exon-scaffold_331-1575043694:900002..900078TCONS_00059843-exon-scaffold_331-1575043694:900002..900078Clytia hemisphaericaexon
TCONS_00059843-exon-scaffold_331-1491911889:900635..900849TCONS_00059843-exon-scaffold_331-1491911889:900635..900849Clytia hemisphaericaexon
TCONS_00059843-exon-scaffold_331-1510915933:900635..900849TCONS_00059843-exon-scaffold_331-1510915933:900635..900849Clytia hemisphaericaexon
TCONS_00059843-exon-scaffold_331-1575043694:900635..900849TCONS_00059843-exon-scaffold_331-1575043694:900635..900849Clytia hemisphaericaexon
TCONS_00059843-exon-scaffold_331-1491911889:901291..901382TCONS_00059843-exon-scaffold_331-1491911889:901291..901382Clytia hemisphaericaexon
TCONS_00059843-exon-scaffold_331-1510915933:901291..901382TCONS_00059843-exon-scaffold_331-1510915933:901291..901382Clytia hemisphaericaexon
TCONS_00059843-exon-scaffold_331-1575043694:901291..901382TCONS_00059843-exon-scaffold_331-1575043694:901291..901382Clytia hemisphaericaexon
TCONS_00059843-exon-scaffold_331-1491911889:903048..903232TCONS_00059843-exon-scaffold_331-1491911889:903048..903232Clytia hemisphaericaexon
TCONS_00059843-exon-scaffold_331-1510915933:903048..903232TCONS_00059843-exon-scaffold_331-1510915933:903048..903232Clytia hemisphaericaexon
TCONS_00059843-exon-scaffold_331-1575043694:903048..903232TCONS_00059843-exon-scaffold_331-1575043694:903048..903232Clytia hemisphaericaexon
TCONS_00059843-exon-scaffold_331-1491911889:904722..904764TCONS_00059843-exon-scaffold_331-1491911889:904722..904764Clytia hemisphaericaexon
TCONS_00059843-exon-scaffold_331-1510915933:904722..904764TCONS_00059843-exon-scaffold_331-1510915933:904722..904764Clytia hemisphaericaexon
TCONS_00059843-exon-scaffold_331-1575043694:904722..904764TCONS_00059843-exon-scaffold_331-1575043694:904722..904764Clytia hemisphaericaexon
TCONS_00059843-exon-scaffold_331-1491911889:905007..905155TCONS_00059843-exon-scaffold_331-1491911889:905007..905155Clytia hemisphaericaexon
TCONS_00059843-exon-scaffold_331-1510915933:905007..905155TCONS_00059843-exon-scaffold_331-1510915933:905007..905155Clytia hemisphaericaexon
TCONS_00059843-exon-scaffold_331-1575043694:905007..905155TCONS_00059843-exon-scaffold_331-1575043694:905007..905155Clytia hemisphaericaexon
TCONS_00059843-exon-scaffold_331-1491911889:905581..905811TCONS_00059843-exon-scaffold_331-1491911889:905581..905811Clytia hemisphaericaexon
TCONS_00059843-exon-scaffold_331-1510915933:905581..905811TCONS_00059843-exon-scaffold_331-1510915933:905581..905811Clytia hemisphaericaexon
TCONS_00059843-exon-scaffold_331-1575043694:905581..905811TCONS_00059843-exon-scaffold_331-1575043694:905581..905811Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_331supercontigscaffold_331:897514..905811 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
6.32062 7.38127 13.8876 13.5969 1.58876 1.99786 0.362806 0.328101 0.784613 0.374419 0 0.265927 0.368636 0.432611 0.713558 1.81439 2.9295 1.46826 0 0 0.941048 1.03679 5.37152 5.3351 23.8681 19.1584 0.261814 0.318712 3.15955 1.90936
Blast
BLAST of TCONS_00059843 vs. Swiss-Prot (Human)
Match: RSF1 (Remodeling and spacing factor 1 OS=Homo sapiens GN=RSF1 PE=1 SV=2)

HSP 1 Score: 102.064 bits (253), Expect = 2.692e-22
Identity = 65/210 (30.95%), Postives = 108/210 (51.43%), Query Frame = 2
Query:  359 PSDYADFAAIHSFLTMFGVELDLPNVSLIDLEQIFSTNHRLSFEKDNIGILEV------LYMKLFRKLKQSYRYSPVANVTSDRLFKTIVRYVYLVRFEQAEQVQFQGYESLSTEQRLKLFKSLCEIQFEENSKFRSTLQETFKGDNASALRLEPFGVEQEGYHIWFQEDQDCNFIVYASGATNENIEEWDVRARTFEELEVYIADLKSR 970
            P    +FA + SFL  +G  LDLP +   +LE++      L     ++G  EV      L++KL RK+ +S        VT+DR  K +++         A +++ +GY  +S E +L L K LCE QF++N KF++ + E    ++A  +RL+P G +++G   W+Q DQD N  +Y     +++   W    R   EL   +A LK++
Sbjct:   17 PGSCPNFAVVCSFLERYGPLLDLPELPFPELERV------LQAPPPDVGNGEVPKELVELHLKLMRKIGKS--------VTADRWEKYLIKICQEFNSTWAWEMEKKGYLEMSVECKLALLKYLCECQFDDNLKFKNIINE----EDADTMRLQPIGRDKDGLMYWYQLDQDHNVRMYIEEQDDQDGSSWKCIVRNRNELAETLALLKAQ 208          

HSP 2 Score: 98.2117 bits (243), Expect = 4.167e-21
Identity = 55/153 (35.95%), Postives = 84/153 (54.90%), Query Frame = 2
Query: 1187 DDGCVKCLRNKQDDQVLLCDTCDAGYHATCLVPPVTTIPEGDWYGPHCMHVTLAQKLAERM----AAIRKKVQAKERKSRRMQFYGIRQSNII---ESNSNEPQT--------------GRRAGRTK--VDYRFSEYDRTVEDALRSSEEEND 1576
            D+ C KC      + +LLCD+CD+GYH  CL PP+  IP+G+W+ P C H  L +KL E++     A++KK +A ER+  R+ + GI   NII   E + +E Q                RR+ RT+  + YRF E+D  +++A+    +E D
Sbjct:  891 DEPCKKCGLPNHPELILLCDSCDSGYHTACLRPPLMIIPDGEWFCPPCQHKLLCEKLEEQLQDLDVALKKKERA-ERRKERLVYVGISIENIIPPQEPDFSEDQEEKKKDSKKSKANLLERRSTRTRKCISYRFDEFDEAIDEAIEDDIKEAD 1042          
The following BLAST results are available for this feature:
BLAST of TCONS_00059843 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
RSF12.692e-2230.95Remodeling and spacing factor 1 OS=Homo sapiens GN... [more]
back to top