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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00059914 ID=TCONS_00059914|Name=TCONS_00059914|organism=Clytia hemisphaerica|type=transcript|length=1144bp
TAGTCTTAGCACTATATAGAaaactgggttcgagtttacgAGGAAAAAAA
CGACTTCAAACTTTTCATATCTTTCAGCCATTATAAACTCGATTCAATAT
CCGTTTTGGTACAAGAAGCAGTGGCGGATCTCAGGAATGACGAGTTGATC
AAGATGTCAAGATATTTCCTCGTTATCGCATTGTtggtttgttgttgttt
tgtcaAGTTTCATTGTAAACCATTGGAAAGCGTAGATGAAGTGAACGATG
CAGAGGAAAATTCTATCGATGACGGAATGCATGATTTCAATGCAATGACA
AAAAAGATGGATCAGTTGAGAAAGAGGAGAGAAGCAGAAGCAACGTTTTG
GGAGAATGAAATCAAACAAATGAATCGTTGGTACCAGATGTGATTcttgg
aatttcaaaaaaatatatttttaattttaaccGAAAATTTAACCAAGTTT
GTGCCAAGTGatacaaccccttctcacagacccactgggaaccctttcca
ctggaaaaattagccaaaatatcgtccccggcgGAAAACTTTACTCTAGt
ttttgtctccgctgaaaataatcagataaaacaatcctcactgtaaaata
ttAGTTTGTCCATccaaaacaatagaattcaaatccGCAGTCATGAGcaa
aatatcaatccccatcgagttttggtccgctatttttacccccactggct
gaaaaaatctcaCCAAGTCTGTAAGAAAGGGGTGTAGTGACCGTATGTTt
gattatttccaaaaaaagccGGTGGAGagatatgtgttcttatcttctag
gtgACCACGTGTTACgaccttcaatttttttatacaaaatgatgtgttct
gatttctaggaaacctttatcgcactatttgtctACCTAAACTTATTACT
ACTTTACGGTTGGATGTGTtttaaaatctaggaaaaacattttgccaAGA
TATACTTGTAAATATGCTTGTAAGATATTTGAAAAACATGAAACATATgc
tctgaaaatttctagggttacctagacaacaagaacacgctAGATGATCA
TGATTATACCCCTTTCTCGTCAGAACACAGAACACATCGTTATTTTTAGC
TAATTAATTTTCGAAGctctgatcagaacagatcaaaatttcta Run BLAST on NCBI transcript from alignment at scaffold_331:931718..936192- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00059914 ID=TCONS_00059914|Name=TCONS_00059914|organism=Clytia hemisphaerica|type=transcript|length=4475bp|location=Sequence derived from alignment at scaffold_331:931718..936192- (Clytia hemisphaerica)
TAGTCTTAGCACTATATAGAAAACTGGGTTCGAGTTTACGAGGAAAAAAA
CGACTTCAAACTTTTCATATCTTTCAGCCATTATAAACTCGATTCAATAT
CCGTTTTGGTACAAGAAGCAGTGGCGGATCTCAGGGTGTGCAAAATTTAT
AACAGAAATCTCAGGTAAGTTATGGCATGTCTCAAAAACTGAAAATTACC
ATAATTTTTAGATCGCATTAGTCGACAGAAAATGACCAAACAAATGACTT
AACTCGAAAGGTACTATGATGTAGTTTCTAACCTGATGTGTAACCTAATT
GTTTTTTCGCTGATTTTCGCGATAAACCGCAAAAACTGATTATTACGTCA
TAATCGATGACGTCACTAAAACTAAAAATTGAATTTCTCAAGAATGGTTT
ATCCAATTGTCTTCAAACTTTCACCACAAAGATGTATTTTACTAAAGTCG
ATCATTTGAAAAAAAAATTCTTTCGAAATTTTGATGACGTCAGCAGAAAT
TAGTAAAAAACGAAAAATCCTATTTTCTGCTGACGTCATCAAAATTTTGA
AAAATTATATTGTTCAAATAATCGACGTTAGTAAGATACATCTTTGCTAA
AAGTTTGAAGACAATTGGATAAACCATTCTTGAGAAATTCAATTTTTAGT
TTTAGTGACGTCATCGATTATTACGTAATAATCAGTTTTTGCGGTTTTTC
GCGAAAATCAGCGAAAGAACAATTAGGTTACACATTAGGTTAGAAACTAC
ATCATAGTACCCTTCATTTTCAGTCATTTGTTTGGTCATTTTCTGTCGAC
TAATGCGATCTAAAAATTATGGTAATTTTAAGACATGCCATAACTTTTCA
TTTTCTTATACCATAGTCGTTTTATGTAATAGTTATCGGACAGTTGCGAG
TACAATATGAGAAATATTTTACGAGTTCCAAGATTTTTCCGTAAAATATT
TTCTGAACCTTTAGGCGAGGAAAATATACGGAAAATCCGAAACAAGTGAA
ATATTTACATATTGTACGTAGACTGGAGTCGTTTATAATGCGTGTAATAC
AGAGGTATAAGCGTTATATAATAACACGATTATTGTTACGGGATTTAGAC
TAGATTTGTCCCTCCATTACTTTTTGCTTTACTTCTACTATAAATGTCTT
GCTAGACTATATTGTACGAGAAAATGTCTGATAACTGGTTTATCGGTGAC
CCATTAAAATGCACTTTTTGTGTTCAAAAGAAGCGCAGGACACTTTTGTA
ACAAATTGACGTTAGATTGCTTCTACCGCTACAATGCAACAACATCTTTT
CGTAAAAACATGTAAAATACAAGTTATATTGTACTCTTTTTAACCAATCA
GATTGCTGATATTTTTTGAATCGCCGATAAGACTATCCCTAAACGGAGTA
TGGATAAAAGAAACGCTCTCCGTGTTATATATTTTTTAAGTCCTTCAGAT
CCGCCACTGAGAAGGGTTGATTAGGTTTGGACAAAAAAAATACAGTCTTA
TTTCTTATTTTTCCCAAGTTATCTCATTTTGTTTTCAGAATGACGAGTTG
ATCAAGATGTCAAGATATTTCCTCGTTATCGCATTGTTGGTTTGTTGTTG
TTTTGTCAAGTTTCATTGTAAACCATTGGAAAGCGTAGATGAAGGTAAGA
TTTTCTGAAGTGTATAAAAATATTCTAAAGTCTTCTTAAAGATGGCCATT
TTAAAGAGTGAGTACATCTCATTGAGTTTGAAGCCCTGAATGGGCTAGAG
ATGAAACTGGATGGGAAATGAAGCCACTTATTTCCTAGTCTACACAATAG
ACAGATCCAGGCTTTTAGGCCTTACTCTTGGTCTATAGGCACTGCTATAG
GCGGCCGNNAATATGTTTAAACATAATAGACAACATTCACAAAAGATGTT
TATCAATAGAGATTTTAAATAAAAGAATGTTTAAAACACAGCTGATTGGC
TTAGGTTTCCAAACTCTCTATTGTTTCATTAAAACCTCAGTGCGCATGCG
ATTTATCTGGAGAATTGAGAATTTCAATATTCAAAACAAGAGGAGTGCTC
ATAGCCCGAAGAGTAGGAGTTTTACGCTCGAAACGAAGGAAGATATGACG
TAGCCTACTTATTTCCCATCTAAAACGCGTGATCTGCGTAATTTTCACAC
AATCGCCATATACAAAGTAAAATTCATCGAAAGATTTCAAGATTCAATTT
GTCATTCTAAAAGCGGCGGAAATCTTAAGGCTTCACTTTTTCTTTCTCTG
GGAAGTTTGAGTACTCTCTAATCTTTCTGTCTTTAAACTCAATGGAAGAC
CACAAGTTTAAAATGTGTTTTCTGACTAATGTAACCAACAAAACTATGGC
ATGTTATACATTTTCTGTTAGACGAACTATTCCTGAATCTGAAAATTCAA
AAATTGTATTGAAAAAAATTTGATGAAGAAGAAAATGAAGACTTTTGCGA
GGAAGAGTATTTCAACTTTGAAGAGCTTAGTTTCGGCGAAGAAAAAACAT
TTTGAAAATTTTTTCGCATTAGATGGTCTATCTTTTACCGAACAATAAAA
AATTTTGCGGAAAATTTTTGTAAATGCTTCTTTGTCTCGAAATCTTCAAA
ATAGTGGTTTTTCATCAATTTTTCATCTGCATTTTGCTTAAAAAAACAGT
CATAACTTTTGACACATCTTTTTAGAAAAATTTTCCGCAAAATTTAAAAT
AGTTCTATTCTTTGCGGACAGTATAAAGAAACTGTGAAAAAAAAAATTAA
TTACCCATTAAAACTAAGCACTTTTTGTAAAAGAGGGTGATGGATGCAAC
ATATTATTAACATCTTTTTAAAGTTCATAAGGTCATTTTTGCAATTAAAT
TCTTAATTACTCTTAAGGGATTCGATTAAAAAGCAATTTATAAAGGCAAT
TCTTTGTTAAAAGTCTTAAGGAACCTGAAATATAACTTTTATGTTCAAAT
ACCAAAATCAATTTTTGGACTATGGTATGGTTTTAGCCGAAATTTCACAG
ATAGAACTTTCGCGAATTCATATAAGATTTAACTTTTTTGGTAACAAAAA
CTCATAATACACGCAAAAATATAGCAAACAGTGCAAAACTGAGTAGGAAA
GTTTATTTTTCGCGAAAAAAAACTTTTGCGTTTTTCAGGTAGAAAAGTTT
CTTCGGGATTCTGAAAGTTTTGCCATCCTCGTTCCTGTCCGGGGGACCGG
AAATTAGCGGGTGCTAGGCATAGGTGCCATTAAGTCCAGAGGGCTGAGAG
TTTTATACTGAAACACTCAGAATATCCTTGGTGTTTGCCACTAGTTTTAT
TGCTTAGATTCAAAATTAATGGCAAACACCCGGTTTTGTTTGCCGTTTTT
AGGCCCTTCCATATAAATCATTACGACATGAAGATCACGACAGGCCCGGC
GGAACAACCGTAAAAGTGAGAGGCTGAAGGCTCTAAATGAGATAAAATTC
GCTAGGAATTCGAGAAAAAAAATTTCCTTTGCTCAAAAGTGGAGAGGCTC
AAGTCTCACCAGTCTCCCCTGCTTTTGCCGGGTCTGACGAATTCTCATAT
TTTCTCTAAAAACACATTATAGTGAACGATGCAGAGGAAAATTCTATCGA
TGACGGAATGCATGATTTCAATGCAATGACAAAAAAGATGGATCAGTTGA
GAAAGAGGAGAGAAGCAGAAGCAACGTTTTGGGAGAATGAAATCAAACAA
ATGAATCGTTGGTACCAGATGTGATTCTTGGAATTTCAAAAAAATATATT
TTTAATTTTAACCGAAAATTTAACCAAGTTTGTGCCAAGTGATACAACCC
CTTCTCACAGACCCACTGGGAACCCTTTCCACTGGAAAAATTAGCCAAAA
TATCGTCCCCGGCGGAAAACTTTACTCTAGTTTTTGTCTCCGCTGAAAAT
AATCAGATAAAACAATCCTCACTGTAAAATATTAGTTTGTCCATCCAAAA
CAATAGAATTCAAATCCGCAGTCATGAGCAAAATATCAATCCCCATCGAG
TTTTGGTCCGCTATTTTTACCCCCACTGGCTGAAAAAATCTCACCAAGTC
TGTAAGAAAGGGGTGTAGTGACCGTATGTTTGATTATTTCCAAAAAAAGC
CGGTGGAGAGATATGTGTTCTTATCTTCTAGGTGACCACGTGTTACGACC
TTCAATTTTTTTATACAAAATGATGTGTTCTGATTTCTAGGAAACCTTTA
TCGCACTATTTGTCTACCTAAACTTATTACTACTTTACGGTTGGATGTGT
TTTAAAATCTAGGAAAAACATTTTGCCAAGATATACTTGTAAATATGCTT
GTAAGATATTTGAAAAACATGAAACATATGCTCTGAAAATTTCTAGGGTT
ACCTAGACAACAAGAACACGCTAGATGATCATGATTATACCCCTTTCTCG
TCAGAACACAGAACACATCGTTATTTTTAGCTAATTAATTTTCGAAGCTC
TGATCAGAACAGATCAAAATTTCTA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00059914-exon-scaffold_331-1575043694:936058..936192 | TCONS_00059914-exon-scaffold_331-1575043694:936058..936192 | Clytia hemisphaerica | exon |
| TCONS_00059914-exon-scaffold_331-1575043694:934549..934654 | TCONS_00059914-exon-scaffold_331-1575043694:934549..934654 | Clytia hemisphaerica | exon |
| TCONS_00059914-exon-scaffold_331-1575043694:931718..932620 | TCONS_00059914-exon-scaffold_331-1575043694:931718..932620 | Clytia hemisphaerica | exon |
| TCONS_00059914-exon-scaffold_331-1510915933:936058..936192 | TCONS_00059914-exon-scaffold_331-1510915933:936058..936192 | Clytia hemisphaerica | exon |
| TCONS_00059914-exon-scaffold_331-1510915933:934549..934654 | TCONS_00059914-exon-scaffold_331-1510915933:934549..934654 | Clytia hemisphaerica | exon |
| TCONS_00059914-exon-scaffold_331-1510915933:931718..932620 | TCONS_00059914-exon-scaffold_331-1510915933:931718..932620 | Clytia hemisphaerica | exon |
| TCONS_00059914-exon-scaffold_331-1491911889:936058..936192 | TCONS_00059914-exon-scaffold_331-1491911889:936058..936192 | Clytia hemisphaerica | exon |
| TCONS_00059914-exon-scaffold_331-1491911889:934549..934654 | TCONS_00059914-exon-scaffold_331-1491911889:934549..934654 | Clytia hemisphaerica | exon |
| TCONS_00059914-exon-scaffold_331-1491911889:931718..932620 | TCONS_00059914-exon-scaffold_331-1491911889:931718..932620 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_331 | supercontig | scaffold_331:931718..936192 - |
Blast
The following BLAST results are available for this feature:
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