TCONS_00059914 (transcript) - C. hemisphaerica

Overview
NameTCONS_00059914
Unique NameTCONS_00059914
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1144

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00059914 ID=TCONS_00059914|Name=TCONS_00059914|organism=Clytia hemisphaerica|type=transcript|length=1144bp
TAGTCTTAGCACTATATAGAaaactgggttcgagtttacgAGGAAAAAAA
CGACTTCAAACTTTTCATATCTTTCAGCCATTATAAACTCGATTCAATAT
CCGTTTTGGTACAAGAAGCAGTGGCGGATCTCAGGAATGACGAGTTGATC
AAGATGTCAAGATATTTCCTCGTTATCGCATTGTtggtttgttgttgttt
tgtcaAGTTTCATTGTAAACCATTGGAAAGCGTAGATGAAGTGAACGATG
CAGAGGAAAATTCTATCGATGACGGAATGCATGATTTCAATGCAATGACA
AAAAAGATGGATCAGTTGAGAAAGAGGAGAGAAGCAGAAGCAACGTTTTG
GGAGAATGAAATCAAACAAATGAATCGTTGGTACCAGATGTGATTcttgg
aatttcaaaaaaatatatttttaattttaaccGAAAATTTAACCAAGTTT
GTGCCAAGTGatacaaccccttctcacagacccactgggaaccctttcca
ctggaaaaattagccaaaatatcgtccccggcgGAAAACTTTACTCTAGt
ttttgtctccgctgaaaataatcagataaaacaatcctcactgtaaaata
ttAGTTTGTCCATccaaaacaatagaattcaaatccGCAGTCATGAGcaa
aatatcaatccccatcgagttttggtccgctatttttacccccactggct
gaaaaaatctcaCCAAGTCTGTAAGAAAGGGGTGTAGTGACCGTATGTTt
gattatttccaaaaaaagccGGTGGAGagatatgtgttcttatcttctag
gtgACCACGTGTTACgaccttcaatttttttatacaaaatgatgtgttct
gatttctaggaaacctttatcgcactatttgtctACCTAAACTTATTACT
ACTTTACGGTTGGATGTGTtttaaaatctaggaaaaacattttgccaAGA
TATACTTGTAAATATGCTTGTAAGATATTTGAAAAACATGAAACATATgc
tctgaaaatttctagggttacctagacaacaagaacacgctAGATGATCA
TGATTATACCCCTTTCTCGTCAGAACACAGAACACATCGTTATTTTTAGC
TAATTAATTTTCGAAGctctgatcagaacagatcaaaatttcta
Run BLAST on NCBI

transcript from alignment at scaffold_331:931718..936192-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00059914 ID=TCONS_00059914|Name=TCONS_00059914|organism=Clytia hemisphaerica|type=transcript|length=4475bp|location=Sequence derived from alignment at scaffold_331:931718..936192- (Clytia hemisphaerica)
TAGTCTTAGCACTATATAGAAAACTGGGTTCGAGTTTACGAGGAAAAAAA CGACTTCAAACTTTTCATATCTTTCAGCCATTATAAACTCGATTCAATAT CCGTTTTGGTACAAGAAGCAGTGGCGGATCTCAGGGTGTGCAAAATTTAT AACAGAAATCTCAGGTAAGTTATGGCATGTCTCAAAAACTGAAAATTACC ATAATTTTTAGATCGCATTAGTCGACAGAAAATGACCAAACAAATGACTT AACTCGAAAGGTACTATGATGTAGTTTCTAACCTGATGTGTAACCTAATT GTTTTTTCGCTGATTTTCGCGATAAACCGCAAAAACTGATTATTACGTCA TAATCGATGACGTCACTAAAACTAAAAATTGAATTTCTCAAGAATGGTTT ATCCAATTGTCTTCAAACTTTCACCACAAAGATGTATTTTACTAAAGTCG ATCATTTGAAAAAAAAATTCTTTCGAAATTTTGATGACGTCAGCAGAAAT TAGTAAAAAACGAAAAATCCTATTTTCTGCTGACGTCATCAAAATTTTGA AAAATTATATTGTTCAAATAATCGACGTTAGTAAGATACATCTTTGCTAA AAGTTTGAAGACAATTGGATAAACCATTCTTGAGAAATTCAATTTTTAGT TTTAGTGACGTCATCGATTATTACGTAATAATCAGTTTTTGCGGTTTTTC GCGAAAATCAGCGAAAGAACAATTAGGTTACACATTAGGTTAGAAACTAC ATCATAGTACCCTTCATTTTCAGTCATTTGTTTGGTCATTTTCTGTCGAC TAATGCGATCTAAAAATTATGGTAATTTTAAGACATGCCATAACTTTTCA TTTTCTTATACCATAGTCGTTTTATGTAATAGTTATCGGACAGTTGCGAG TACAATATGAGAAATATTTTACGAGTTCCAAGATTTTTCCGTAAAATATT TTCTGAACCTTTAGGCGAGGAAAATATACGGAAAATCCGAAACAAGTGAA ATATTTACATATTGTACGTAGACTGGAGTCGTTTATAATGCGTGTAATAC AGAGGTATAAGCGTTATATAATAACACGATTATTGTTACGGGATTTAGAC TAGATTTGTCCCTCCATTACTTTTTGCTTTACTTCTACTATAAATGTCTT GCTAGACTATATTGTACGAGAAAATGTCTGATAACTGGTTTATCGGTGAC CCATTAAAATGCACTTTTTGTGTTCAAAAGAAGCGCAGGACACTTTTGTA ACAAATTGACGTTAGATTGCTTCTACCGCTACAATGCAACAACATCTTTT CGTAAAAACATGTAAAATACAAGTTATATTGTACTCTTTTTAACCAATCA GATTGCTGATATTTTTTGAATCGCCGATAAGACTATCCCTAAACGGAGTA TGGATAAAAGAAACGCTCTCCGTGTTATATATTTTTTAAGTCCTTCAGAT CCGCCACTGAGAAGGGTTGATTAGGTTTGGACAAAAAAAATACAGTCTTA TTTCTTATTTTTCCCAAGTTATCTCATTTTGTTTTCAGAATGACGAGTTG ATCAAGATGTCAAGATATTTCCTCGTTATCGCATTGTTGGTTTGTTGTTG TTTTGTCAAGTTTCATTGTAAACCATTGGAAAGCGTAGATGAAGGTAAGA TTTTCTGAAGTGTATAAAAATATTCTAAAGTCTTCTTAAAGATGGCCATT TTAAAGAGTGAGTACATCTCATTGAGTTTGAAGCCCTGAATGGGCTAGAG ATGAAACTGGATGGGAAATGAAGCCACTTATTTCCTAGTCTACACAATAG ACAGATCCAGGCTTTTAGGCCTTACTCTTGGTCTATAGGCACTGCTATAG GCGGCCGNNAATATGTTTAAACATAATAGACAACATTCACAAAAGATGTT TATCAATAGAGATTTTAAATAAAAGAATGTTTAAAACACAGCTGATTGGC TTAGGTTTCCAAACTCTCTATTGTTTCATTAAAACCTCAGTGCGCATGCG ATTTATCTGGAGAATTGAGAATTTCAATATTCAAAACAAGAGGAGTGCTC ATAGCCCGAAGAGTAGGAGTTTTACGCTCGAAACGAAGGAAGATATGACG TAGCCTACTTATTTCCCATCTAAAACGCGTGATCTGCGTAATTTTCACAC AATCGCCATATACAAAGTAAAATTCATCGAAAGATTTCAAGATTCAATTT GTCATTCTAAAAGCGGCGGAAATCTTAAGGCTTCACTTTTTCTTTCTCTG GGAAGTTTGAGTACTCTCTAATCTTTCTGTCTTTAAACTCAATGGAAGAC CACAAGTTTAAAATGTGTTTTCTGACTAATGTAACCAACAAAACTATGGC ATGTTATACATTTTCTGTTAGACGAACTATTCCTGAATCTGAAAATTCAA AAATTGTATTGAAAAAAATTTGATGAAGAAGAAAATGAAGACTTTTGCGA GGAAGAGTATTTCAACTTTGAAGAGCTTAGTTTCGGCGAAGAAAAAACAT TTTGAAAATTTTTTCGCATTAGATGGTCTATCTTTTACCGAACAATAAAA AATTTTGCGGAAAATTTTTGTAAATGCTTCTTTGTCTCGAAATCTTCAAA ATAGTGGTTTTTCATCAATTTTTCATCTGCATTTTGCTTAAAAAAACAGT CATAACTTTTGACACATCTTTTTAGAAAAATTTTCCGCAAAATTTAAAAT AGTTCTATTCTTTGCGGACAGTATAAAGAAACTGTGAAAAAAAAAATTAA TTACCCATTAAAACTAAGCACTTTTTGTAAAAGAGGGTGATGGATGCAAC ATATTATTAACATCTTTTTAAAGTTCATAAGGTCATTTTTGCAATTAAAT TCTTAATTACTCTTAAGGGATTCGATTAAAAAGCAATTTATAAAGGCAAT TCTTTGTTAAAAGTCTTAAGGAACCTGAAATATAACTTTTATGTTCAAAT ACCAAAATCAATTTTTGGACTATGGTATGGTTTTAGCCGAAATTTCACAG ATAGAACTTTCGCGAATTCATATAAGATTTAACTTTTTTGGTAACAAAAA CTCATAATACACGCAAAAATATAGCAAACAGTGCAAAACTGAGTAGGAAA GTTTATTTTTCGCGAAAAAAAACTTTTGCGTTTTTCAGGTAGAAAAGTTT CTTCGGGATTCTGAAAGTTTTGCCATCCTCGTTCCTGTCCGGGGGACCGG AAATTAGCGGGTGCTAGGCATAGGTGCCATTAAGTCCAGAGGGCTGAGAG TTTTATACTGAAACACTCAGAATATCCTTGGTGTTTGCCACTAGTTTTAT TGCTTAGATTCAAAATTAATGGCAAACACCCGGTTTTGTTTGCCGTTTTT AGGCCCTTCCATATAAATCATTACGACATGAAGATCACGACAGGCCCGGC GGAACAACCGTAAAAGTGAGAGGCTGAAGGCTCTAAATGAGATAAAATTC GCTAGGAATTCGAGAAAAAAAATTTCCTTTGCTCAAAAGTGGAGAGGCTC AAGTCTCACCAGTCTCCCCTGCTTTTGCCGGGTCTGACGAATTCTCATAT TTTCTCTAAAAACACATTATAGTGAACGATGCAGAGGAAAATTCTATCGA TGACGGAATGCATGATTTCAATGCAATGACAAAAAAGATGGATCAGTTGA GAAAGAGGAGAGAAGCAGAAGCAACGTTTTGGGAGAATGAAATCAAACAA ATGAATCGTTGGTACCAGATGTGATTCTTGGAATTTCAAAAAAATATATT TTTAATTTTAACCGAAAATTTAACCAAGTTTGTGCCAAGTGATACAACCC CTTCTCACAGACCCACTGGGAACCCTTTCCACTGGAAAAATTAGCCAAAA TATCGTCCCCGGCGGAAAACTTTACTCTAGTTTTTGTCTCCGCTGAAAAT AATCAGATAAAACAATCCTCACTGTAAAATATTAGTTTGTCCATCCAAAA CAATAGAATTCAAATCCGCAGTCATGAGCAAAATATCAATCCCCATCGAG TTTTGGTCCGCTATTTTTACCCCCACTGGCTGAAAAAATCTCACCAAGTC TGTAAGAAAGGGGTGTAGTGACCGTATGTTTGATTATTTCCAAAAAAAGC CGGTGGAGAGATATGTGTTCTTATCTTCTAGGTGACCACGTGTTACGACC TTCAATTTTTTTATACAAAATGATGTGTTCTGATTTCTAGGAAACCTTTA TCGCACTATTTGTCTACCTAAACTTATTACTACTTTACGGTTGGATGTGT TTTAAAATCTAGGAAAAACATTTTGCCAAGATATACTTGTAAATATGCTT GTAAGATATTTGAAAAACATGAAACATATGCTCTGAAAATTTCTAGGGTT ACCTAGACAACAAGAACACGCTAGATGATCATGATTATACCCCTTTCTCG TCAGAACACAGAACACATCGTTATTTTTAGCTAATTAATTTTCGAAGCTC TGATCAGAACAGATCAAAATTTCTA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_037676XLOC_037676Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00059914-exon-scaffold_331-1575043694:936058..936192TCONS_00059914-exon-scaffold_331-1575043694:936058..936192Clytia hemisphaericaexon
TCONS_00059914-exon-scaffold_331-1575043694:934549..934654TCONS_00059914-exon-scaffold_331-1575043694:934549..934654Clytia hemisphaericaexon
TCONS_00059914-exon-scaffold_331-1575043694:931718..932620TCONS_00059914-exon-scaffold_331-1575043694:931718..932620Clytia hemisphaericaexon
TCONS_00059914-exon-scaffold_331-1510915933:936058..936192TCONS_00059914-exon-scaffold_331-1510915933:936058..936192Clytia hemisphaericaexon
TCONS_00059914-exon-scaffold_331-1510915933:934549..934654TCONS_00059914-exon-scaffold_331-1510915933:934549..934654Clytia hemisphaericaexon
TCONS_00059914-exon-scaffold_331-1510915933:931718..932620TCONS_00059914-exon-scaffold_331-1510915933:931718..932620Clytia hemisphaericaexon
TCONS_00059914-exon-scaffold_331-1491911889:936058..936192TCONS_00059914-exon-scaffold_331-1491911889:936058..936192Clytia hemisphaericaexon
TCONS_00059914-exon-scaffold_331-1491911889:934549..934654TCONS_00059914-exon-scaffold_331-1491911889:934549..934654Clytia hemisphaericaexon
TCONS_00059914-exon-scaffold_331-1491911889:931718..932620TCONS_00059914-exon-scaffold_331-1491911889:931718..932620Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_331supercontigscaffold_331:931718..936192 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0777384 0.150682 0.149616 0.233107 1.50617 1.57834 24.6155 25.065 2.21622 1.60711 9.11714 1.80381 0 0 0.272358 0.208099 1.63468 2.72956 2.51838 5.94728 4.86907 2.78461 1.0074 1.45481 2.4036 3.2916 0.69243 0.478824 0.417165 0.344146
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00059914 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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