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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00059919 ID=TCONS_00059919|Name=TCONS_00059919|organism=Clytia hemisphaerica|type=transcript|length=1013bp
GTGCAACAACAAATGCTGCATCCAACTcaatcaaacatcaaatcaataat
CGGCAGGCGGACATTGGATTGTTCACCTAGATGGAAGACCATCGAAAGCA
CTTCCAAGTATTCCAAACTATGAATTGAGTTCAGAATTTCAATATGGCAT
CACGACCAAGCTCCAAATCAAATTTGCTGACTCCAAATACTCCAACAAGG
AGGAAATCATCAAGTAAAGCTGGTGGGCGTACACctacaaaatcaaaatc
aaatgcCAAAGCATCCCCAAGTCGAGTTGCAAGCTcaagaaatacaaata
aaaGTAGTGGAAAAGGTAAAAAGAACAAACAAGACAGTTCTGCATctgag
aaaaatgaagatgttgAGGTCAAAGTAGAAGAACCACCAAAAGATGAACC
AGAACAAGAGGAAGTTGTCATTCCACCACCAGTAGAAGTTGAACCTGAAG
TCAATCTTGAAGAAGTTATGGAGCTGGAGACTATTTCACTTATCAAGAGA
CAAGTCACGCTCACAGGATTTAATGAATCAATGTGGAAAGATGATCATTC
AGAAACGATTCTCAATTTCATCAGATGTATCGAGGAAAATAAACGATTAC
TAACATTTCACATTGATGCAGACCAACAATTGGTAGTATCTACTGAAATC
CCAACGGCTCCTGTCGGGCAAGTTTTCTTCATCATCAGGAAAAAGGAAGT
CAAAATTACACCAAACAATTTCAACCAAGCTGTACTTTTTCAATTGATTC
GTTCTAATTACGTTGAAAGTTTACTGCGAACAATGTCAAGTTTGTATGGA
CCAATgttctttcaaaacaaatcgTGGCCTGAGAGCATCAAAAATGACTT
CATTAATCATGTTCACAAGTTCATGGCTACATTGATTGATGCTAAATATA
AAACTCAAGGAAAAACTGTTCTTTATGTACCAAATGAAGGTCGTAATCTT
ACTGTGCAACAAGCTACAAGAAACAAGGAATATGTTCAAAGATTGGAAAG
TTGCATGATCCAC Run BLAST on NCBI transcript from alignment at scaffold_331:1033286..1037722- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00059919 ID=TCONS_00059919|Name=TCONS_00059919|organism=Clytia hemisphaerica|type=transcript|length=4437bp|location=Sequence derived from alignment at scaffold_331:1033286..1037722- (Clytia hemisphaerica)
GTGCAACAACAAATGCTGCATCCAACTCAATCAAACATCAAATCAATAAT
CGGCAGGCGGACATTGGATTGTTCACCTAGATGGAAGACCATCGAAAGCA
CTTCCAAGTATTCCAAGTAAGTATAGTGTGTGACGTCATAATTACTGCTT
TTCAGTTTGCATGTTTTGAAAGTTTAATGTGTGTACTCCGTCTTTGTGGA
ATTTCTTAATGGCATGAAAACAGAATATGCTATGTCTTTAAGAACAAATT
TCTAAAAGGCTTTTTTTGTTGTGTAAATGTTTCTATTTGGATTAAGAAAT
TCGATCTTTTATTGTTCTAATGATTATAATATTTATTTATACTGTAAGAT
GCTTTGTTATCTTTTTAATCTTTGTATAAACTTGCATATGTTTTGCATAC
TTTCCAACTAAATCCAACTATGGCTCTTTCGTTCCTCTATTTTTGCATAC
AATTCAAGATGGCGGATGGAAAGGCGAAAAGGTCTATTCCACTCTTTTTT
GCCTTTTTTAATTCAATTGCCTTGGAAACTCATACATTTTCTTCTCTCGC
CTCGGAAATTTCGAATTTTGGTGAAAACTTTTGCCCTCAGAAATCCTGTG
TCGTCCGCCCCTCTGTCACAGACAAATTCTGGAATGGACCAATTTATAGT
CAATTTAAGGGTGATGATATGATAGCAAAATTGTTTTTAGAAGTGAGTAA
AGTTCACCGTTGAAGATTTTAAGAGTTTTAGAAGCACATTTCGCTTGACA
GAATAAGAGACTTGATCTTTAAGTTTAATAAAGAACGGTAGATCAGCAGG
AGGAGGTAGAGATTTTGATGAAAAAGTTTTTGTACACAACCTTGACAACG
CACCAGGCAGTCTGGTGTGTTTTGTCCTATGCCAAAAGGTTGGCAGACGA
TATCATCCACCAGGAGCAGGATGCTAGTGAAAATTTGAAATCTGCAGACC
TAGACGGGGGTTCGGTTATTACCAGTTAGGGTTAGCGTTGGAGCTCAAGA
GTCACAATATAAGGCTGGAGGCCTTCTTAGGGGCATTCGTACGTTATGGT
GACTTAACTTAGGATCCCGTAGGGATCCTTGTAGGGGCATTGATAGGGTT
GGGAGCTTAATTAAAGGTCTGTAAATTACACACTATAAGTATTTGTGAAT
AACAGCTGTTTATTGTGTCTCGTTGGCGCAAGCCGTTAGGCATTGGGTTT
GTAAACCAAGGTTGCTTGCATTTGGTAATTCGATCCGGGGTCAGAGACCT
ATTTCACCGGTACAGGTAAATTTCAGAAAAATACTTAGAAATCAGTTAGA
AACACTACTTGAGAAAGTCAGAAAATCGGGATAGAAGATAGGAGAGTAGA
AAATACTGGAAAATAGGGGAGAAATAGGAGAGGATGCATCCTGGTGAATG
ATATATTTTGCCAACCGTGCCAAAAAGTATCCTTCAAACAAAAACTTTTT
GTCCGGTGCTAGTCCAGTGTAAACTTTTTTAACTTCTTGACACTGGATAC
GTGTTTCAAAAACAATACGCACCAGACTCAAGTCCGGTGTTGAGATTGTC
CAGTGTTAAAAAGTATTCTTATCTGACACCGGACTTTGGAGTAAGATGAA
ATTTTTAGTGAATTTTTAAAGCCTCAACTTGAAAACTTGAAATGAAACAA
AATGACTGATTGTTAAATGTGCAGCAGCCAGAATCAACCAACCAAATTTT
GTCATTAGACCTATCCTCTGGCTTTTCAGGCCTCTAGGGCAGGGGCCGTA
GATTTTTATTGTAATCACTTCAAATGGATAGACCAAGGCCTGAACTATCA
GAAAGTTATTTTCAGCAGGAACAACTCCCCTGGGACGACAGGTCAGGTGG
CTCCAAAATACATCCCTTAAAATCAAATTTTTAGTGATTTTGTGATGTCA
TAACTGCAGCTACCATTTTGAAAATTTTGATTTTTTTTAATTCTATATAT
ATAGTTTGCTGGCCTTAGTTTAAGAATCACCAAAAATCAATTCCTCATTT
TGATTTGAGAAACCATGGTTCTATATCAAAATGTTTTTAAGTACAATGCC
CAAAAATGTCAAAAACTTCAAATTGGCATAAGTCCACCATTATGGATTTT
CAGACCAAAATATTTTGGGATTTCACTCAGTTCATTGTATTAAACATATC
TAAAAATATCCTGAAGTTGGTTCCATCGGAGACTGTCCTACGTAAATGTC
CCTTACATAACAGGCACATGCTTTTCCTCTTTTTTATTTTAATCATGAAA
CTACTACCTAACGTGAATAGGAAACAAGCAGAAAAAATAGAAAAATTAGA
CATAAAAAAAAATTTTTTTAGCCATTTTTTANATGAAACTACTACCTAAC
GTGAATAGGAAACAAGCAGAAAAAATAGAAAAATAAGACATATAAAAAAA
AAATTTTAGCCATTTTTTTTGTCTTTCTTTTTGCTACTTTGCAGGCCCTC
TCACTCATGTACTAAAGGTTATTATTCTTTTTCAATGAAATATAAAGACT
ATGAATTGAGTTCAGAATTTCAATATGGCATCACGACCAAGCTCCAAATC
AAATTTGCTGACTCCAAATACTCCAACAAGGAGGAAATCATCAAGTAAAG
CTGGTGGGCGTACACCTACAAAATCAAAATCAAATGCCAAAGCATCCCCA
AGTCGAGTTGCAAGCTCAAGAAATACAAATAAAAGTAGTGGAAAAGGTAA
AAAGAACAAACAAGACAGTTCTGCATCTGAGAAAAATGAAGATGTTGAGG
TCAAAGTAGAAGAACCACCAAAAGATGAACCAGAACAAGAGGAAGTTGTC
ATTCCACCACCAGTAGAAGTTGAACCTGAAGTCAATCTTGAAGAAGTTAT
GGAGCTGGTAAGTACTTATTATTATGGCATTTTATTTTTTCATTAATTTC
TTGAAATAAGTTTTCATAAGTGTGGTTAAAAAGTTAAGAGTTACAGATTT
TTCTTCAAAGTATTTTTGATTAATTAATGTAATGTAATAACCACACCATT
ATTATTTTAGCATGAACACTTTCTTTGATTTTCAGGCTTGTTAATTTTTG
TGTGAATTCTTAAAATTTGAAAATCATTATTGATTTTTCAGGAGACTATT
TCACTTATCAAGAGACAAGTCACGCTCACAGGATTTAATGAATCAATGTG
GAAAGATGATCATTCAGAAACGATTCTCAATTTCATCAGATGTATCGAGG
AAAATAAACGATTACTAACATTTCACATTGATGCAGACCAACAATTGGTA
GTATCTACTGAAATCCCAACGGCTCCTGTCGGGCAAGTTTTCTTCATCAT
CAGGAAAAAGGAAGTCAAAATTACACCAAACAATTTCAACCAAGCTGTAC
TTTTTCAATTGATTCGTTCTAATTACGTTGAAAGTTTACTGCGAACAATG
TCAAGTTTGTATGGACCAATGTTCTTTCAAAACAAATCGTGGCCTGAGAG
TATCCTTTTCAATGTATTTCAAAATCTTTATAAGTGTCCTCATAGGCAAT
TTCAGGGTCGAAAGGAATCATTGATAACAACTTTCTTTTGGTTAGAAATC
TTGAAGGTTTTTTTGAGTTCAACCAATGGGAAGCTGTTATGACTACATTA
TTCTTTTTGACTGTGAAATGTTAAGTATTAAAGTCAAGTGAGGTTTGTTC
TGTCTAGGAAGTCTTGTGTGGTTTTATTATTTTAACATTTTCTGTTTTAA
GATATCTCATTTGGCTTCCCCTGTCAATAGCTTGTCTTGAAGCAATCATG
ACTTAAACAAGAATCATTTTACAGATAATTTGACAGTTCTTTCCTTGACA
AAAGCTTTCAACCAAAGGCATCAAAAATGACTTCATTAATCATGTTCACA
AGTTCATGGCTACATTGATTGATGCTAAATATAAAACTCAAGGAAAAACT
GTTCTTTATGTACCAAATGAAGGTCGTAATCTTACTGTGCAACAAGCTAC
AAGAAACAAGGAATATGTTCAAAGATTGGAAAGTATGTTTTTCACAACCA
GCTTTTATTTGAATTTTGCCAAATGTTTTGTACATAAGAACTTGCTTTTT
AGCTGAACCTATGGTTAGCTGGATTATGATTGGCAAAATTTATCTATTGC
CAATCAAAAATTGACAATGTATAGACATTCCAACACTTTTCACTTCGGTT
TGCTTACTATTTTATCGACTGTCTTAACCAGAGTGATGCACTAAAACTCA
GTAGCTTTAACCCGCTTCAACAGTATTATTTTTGGCTCAATTGGAAAAAG
CCTCTACTGATTTCTTTTCATTTTTCAATTTTTCTTTTTCTAGTATTTTA
CATTATTTACGTTATTTACTTTGCTCTGCTTTAATTTAAACTGAATATTG
AATTTGTAAAAATCTAAAATTTAACCTCTTCAATAATTGTTCACTTCAAA
TCAAAATCTTTTGAACCCTTCAGGTTGCATGATCCAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00059919-exon-scaffold_331-1575043694:1037607..1037722 | TCONS_00059919-exon-scaffold_331-1575043694:1037607..1037722 | Clytia hemisphaerica | exon |
| TCONS_00059919-exon-scaffold_331-1575043694:1034866..1035225 | TCONS_00059919-exon-scaffold_331-1575043694:1034866..1035225 | Clytia hemisphaerica | exon |
| TCONS_00059919-exon-scaffold_331-1575043694:1034274..1034631 | TCONS_00059919-exon-scaffold_331-1575043694:1034274..1034631 | Clytia hemisphaerica | exon |
| TCONS_00059919-exon-scaffold_331-1575043694:1033741..1033905 | TCONS_00059919-exon-scaffold_331-1575043694:1033741..1033905 | Clytia hemisphaerica | exon |
| TCONS_00059919-exon-scaffold_331-1575043694:1033286..1033299 | TCONS_00059919-exon-scaffold_331-1575043694:1033286..1033299 | Clytia hemisphaerica | exon |
| TCONS_00059919-exon-scaffold_331-1510915933:1037607..1037722 | TCONS_00059919-exon-scaffold_331-1510915933:1037607..1037722 | Clytia hemisphaerica | exon |
| TCONS_00059919-exon-scaffold_331-1510915933:1034866..1035225 | TCONS_00059919-exon-scaffold_331-1510915933:1034866..1035225 | Clytia hemisphaerica | exon |
| TCONS_00059919-exon-scaffold_331-1510915933:1034274..1034631 | TCONS_00059919-exon-scaffold_331-1510915933:1034274..1034631 | Clytia hemisphaerica | exon |
| TCONS_00059919-exon-scaffold_331-1510915933:1033741..1033905 | TCONS_00059919-exon-scaffold_331-1510915933:1033741..1033905 | Clytia hemisphaerica | exon |
| TCONS_00059919-exon-scaffold_331-1510915933:1033286..1033299 | TCONS_00059919-exon-scaffold_331-1510915933:1033286..1033299 | Clytia hemisphaerica | exon |
| TCONS_00059919-exon-scaffold_331-1491911889:1037607..1037722 | TCONS_00059919-exon-scaffold_331-1491911889:1037607..1037722 | Clytia hemisphaerica | exon |
| TCONS_00059919-exon-scaffold_331-1491911889:1034866..1035225 | TCONS_00059919-exon-scaffold_331-1491911889:1034866..1035225 | Clytia hemisphaerica | exon |
| TCONS_00059919-exon-scaffold_331-1491911889:1034274..1034631 | TCONS_00059919-exon-scaffold_331-1491911889:1034274..1034631 | Clytia hemisphaerica | exon |
| TCONS_00059919-exon-scaffold_331-1491911889:1033741..1033905 | TCONS_00059919-exon-scaffold_331-1491911889:1033741..1033905 | Clytia hemisphaerica | exon |
| TCONS_00059919-exon-scaffold_331-1491911889:1033286..1033299 | TCONS_00059919-exon-scaffold_331-1491911889:1033286..1033299 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_331 | supercontig | scaffold_331:1033286..1037722 - |
Blast
BLAST of TCONS_00059919 vs. Swiss-Prot (Human)
Match: DYH2 (Dynein heavy chain 2, axonemal OS=Homo sapiens GN=DNAH2 PE=2 SV=3) HSP 1 Score: 137.887 bits (346), Expect = 6.155e-35 Identity = 65/175 (37.14%), Postives = 99/175 (56.57%), Query Frame = 3
Query: 489 LIKRQVTLTGFNESMWKDDHSETILNFIRCIEENKRLLTFHIDADQQLVVSTEIPTAPVGQVFFIIRKKEVKITPNNFNQAVLFQLIRSNYVESLLRTMSSLYGPMFFQNKSWPESIKNDFINHVHKFMATLIDAKYKTQGKTVLYVPNEGRNLTVQQATRNKEYVQRLESCMIH 1013
L + LTG +++W +H + +F + + + +LT ID L + +P Q+ + IR+ V IT NF V F +R Y+ +LLR + ++ P F N WPESI+N F +H+HKF+A L D +YK +G TVLY+P E N+ + ++KE VQRLE+ MIH
Sbjct: 79 LFLSRAALTGLADAVWTQEHDAILEHFAQ--DPTESILTIFIDPCFGLKLELGMPVQTQNQLVYFIRQAPVPITWENFEATVQFGTVRGPYIPALLRLLGGVFAPQIFANTGWPESIRNHFASHLHKFLACLTDTRYKLEGHTVLYIPAEAMNMKPEMVIKDKELVQRLETSMIH 251
The following BLAST results are available for this feature:
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