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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00059925 ID=TCONS_00059925|Name=TCONS_00059925|organism=Clytia hemisphaerica|type=transcript|length=5012bpRun BLAST on NCBI protein sequence of TCONS_00059925-protein >TCONS_00059925-protein ID=TCONS_00059925-protein|Name=TCONS_00059925-protein|organism=Clytia hemisphaerica|type=polypeptide|length=1404bp MMRILCDHILITLFVFTIVFNFDQNCYVEADTIPPMVTWNQTDYYFSDVERun BLAST on NCBI transcript from alignment at scaffold_331:1116392..1132224- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00059925 ID=TCONS_00059925|Name=TCONS_00059925|organism=Clytia hemisphaerica|type=transcript|length=15833bp|location=Sequence derived from alignment at scaffold_331:1116392..1132224- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_331:1116392..1132224- >TCONS_00059925 ID=TCONS_00059925|Name=TCONS_00059925|organism=Clytia hemisphaerica|type=CDS|length=63225bp|location=Sequence derived from alignment at scaffold_331:1116392..1132224- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00059925 vs. Swiss-Prot (Human)
Match: AGRL3 (Adhesion G protein-coupled receptor L3 OS=Homo sapiens GN=ADGRL3 PE=1 SV=2) HSP 1 Score: 189.119 bits (479), Expect = 4.813e-48 Identity = 125/367 (34.06%), Postives = 184/367 (50.14%), Query Frame = 3
Query: 2121 NMTPNCSFWDTEK----GIWSKQGIRTIQKPKVNSILCQTNHLTNFALIL---DVSQTGA-NPLALQMITWVGCGISLASLILTVIVFGASRKLR-------KRLVTRLIICXXXXXXXXXXXXXXGVNETQSKTSCQAIAGLIQYFLLMTFFWMGAQGINLYNSLVRVMKRKISDTKYFLRSCVVNTVVPALIVIISASVKSNSYGGEKFCLVH-GMPFYFGLLLPICFIILMNIVLLSLVIYNVHHTPANIXXXXXXXXXXXYMFKLTKITIACSTLLGIAWLFGVLAVGKLTTVMQYLFCIFNSLQGLFVLVFYVLTNEEVKKEWLELLGWDDFSI----ISLSFGAKKGSHDINTQSTNDQSR 3161
N PNCSFW K G WS QG R + K ++ C NHLTNFA+++ +V + A + L L +ITWVG +SL L++ + F R L+ K L L + L LI G+N T +C A L+ +F L F WM +G+ LY LV V + + S KYF +V +PALIV +SA+V SYG +K C + F + + P II++N++ L + +Y + H A I + + I + C LLG+ W FG++ + + T +M YLF IFNSLQG+F+ +F+ + ++V+KE+ + L S S+ G GS ST QSR
Sbjct: 800 NFNPNCSFWSYSKRTMTGYWSTQGCRLLTTNKTHTT-CSCNHLTNFAVLMAHVEVKHSDAVHDLLLDVITWVGILLSLVCLLICIFTFCFFRGLQSDRNTIHKNLCISLFVAELLFLI--------GINRTDQPIACAVFAALLHFFFLAAFTWMFLEGVQLYIMLVEVFESEHSRRKYFY---LVGYGMPALIVAVSAAVDYRSYGTDKVCWLRLDTYFIWSFIGPATLIIMLNVIFLGIALYKMFHHTA-ILKPESGCLDNIKSWVIGAIALLC--LLGLTWAFGLMYINESTVIMAYLFTIFNSLQGMFIFIFHCVLQKKVRKEYGKCLRTHCCSGKSTESSIGSGKTSGSRTPGRYSTGSQSR 1151 The following BLAST results are available for this feature:
BLAST of TCONS_00059925 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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