TCONS_00060069 (transcript) - C. hemisphaerica

Overview
NameTCONS_00060069
Unique NameTCONS_00060069
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length435

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00060069 ID=TCONS_00060069|Name=TCONS_00060069|organism=Clytia hemisphaerica|type=transcript|length=435bp
CCATAATAGGCAGGTGGAGATTTGTCAGTTCAGTAGTTATAAGTCCTTTT
TAACAAATGCTTGGTTGGCAAGGAAGAAAAGCAAAGCCAAGtcaattttc
agactcaaaaacaaaatagcttATTTTCTCACTTGACTCACTTGCTGAAG
AAGTGTTTTGATTGGCAGATTCTTATCAACAGTTTTTTTATGGTTATTGG
AAATTTAAAACCATGGGTCTCCAGGCCATGATTGACATGGCCTTTTGTTT
TGGAAAAGAATGAAAAGCGATCTAAGTGAATGACAGTTGTTAGCTGACTG
CTCTTGTCTTAGATGGAAAAGAGTGAAAAAACAAACAGCTGCCTATTCTG
ACCTGCCAACTTGTGATGTTCATTTTGCGTGAAATAAAAGTTTCAAAGGG
AGATTCAAAATCTTAGCCCAATTTTCCGATTGGGA
Run BLAST on NCBI

transcript from alignment at scaffold_333:41885..42319

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00060069 ID=TCONS_00060069|Name=TCONS_00060069|organism=Clytia hemisphaerica|type=transcript|length=435bp|location=Sequence derived from alignment at scaffold_333:41885..42319 (Clytia hemisphaerica)
TCCCAATCGGAAAATTGGGCTAAGATTTTGAATCTCCCTTTGAAACTTTT
ATTTCACGCAAAATGAACATCACAAGTTGGCAGGTCAGAATAGGCAGCTG
TTTGTTTTTTCACTCTTTTCCATCTAAGACAAGAGCAGTCAGCTAACAAC
TGTCATTCACTTAGATCGCTTTTCATTCTTTTCCAAAACAAAAGGCCATG
TCAATCATGGCCTGGAGACCCATGGTTTTAAATTTCCAATAACCATAAAA
AAACTGTTGATAAGAATCTGCCAATCAAAACACTTCTTCAGCAAGTGAGT
CAAGTGAGAAAATaagctattttgtttttgagtctgaaaattgaCTTGGC
TTTGCTTTTCTTCCTTGCCAACCAAGCATTTGTTAAAAAGGACTTATAAC
TACTGAACTGACAAATCTCCACCTGCCTATTATGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_037784XLOC_037784Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00060069-exon-scaffold_333-1491911889:41885..42319TCONS_00060069-exon-scaffold_333-1491911889:41885..42319Clytia hemisphaericaexon
TCONS_00060069-exon-scaffold_333-1510915933:41885..42319TCONS_00060069-exon-scaffold_333-1510915933:41885..42319Clytia hemisphaericaexon
TCONS_00060069-exon-scaffold_333-1575043694:41885..42319TCONS_00060069-exon-scaffold_333-1575043694:41885..42319Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_333supercontigscaffold_333:41885..42319 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.156981	0.153081	0.888711	0.695572	0.211698	0.167287	0	0	0	0.163856	0.159043	0.940937	0.626419	0.108424	0.267417	0.19132	0	0.120787	0.834372	0	0.303557	0.222096	0.179992	0	0.168544	0	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00060069 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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