TCONS_00060074 (transcript) - C. hemisphaerica

Overview
NameTCONS_00060074
Unique NameTCONS_00060074
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length363

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00060074 ID=TCONS_00060074|Name=TCONS_00060074|organism=Clytia hemisphaerica|type=transcript|length=363bp
CAAAAGTTTGTTTGTATGTGAATTTCGAaatgttatgatatagatagaGT
CTAATTATGTAACGGTTAAAGAGGAATCTGATAAGGCTCTTGACATACAA
GGAAGAATATGTATTGAAGCATCATCAAGACGTAATAACAGACAATAGAA
CGAGGGGAGGTGCGGTGTATGAAGTTTTGTTGTGAAATAGCTTTACATAT
AAACAAAGCCTTTTGTGTAGAGAGTTGCGCTAACGATATTCTAAAGGCTA
ATCTCAAGTCAAATGATCTGAAATATGTATATCATGACAAAACTTTGTCA
TCACACGAGAGAAATTAttgaaagacatttttttataagctttTTGTGTA
TCATTTTGAAGGA
Run BLAST on NCBI

transcript from alignment at scaffold_333:164037..164399

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00060074 ID=TCONS_00060074|Name=TCONS_00060074|organism=Clytia hemisphaerica|type=transcript|length=363bp|location=Sequence derived from alignment at scaffold_333:164037..164399 (Clytia hemisphaerica)
TCCTTCAAAATGATACACAAaaagcttataaaaaaatgtctttcaaTAAT
TTCTCTCGTGTGATGACAAAGTTTTGTCATGATATACATATTTCAGATCA
TTTGACTTGAGATTAGCCTTTAGAATATCGTTAGCGCAACTCTCTACACA
AAAGGCTTTGTTTATATGTAAAGCTATTTCACAACAAAACTTCATACACC
GCACCTCCCCTCGTTCTATTGTCTGTTATTACGTCTTGATGATGCTTCAA
TACATATTCTTCCTTGTATGTCAAGAGCCTTATCAGATTCCTCTTTAACC
GTTACATAATTAGACtctatctatatcataacattTCGAAATTCACATAC
AAACAAACTTTTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_037789XLOC_037789Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00060074-exon-scaffold_333-1491911889:164037..164399TCONS_00060074-exon-scaffold_333-1491911889:164037..164399Clytia hemisphaericaexon
TCONS_00060074-exon-scaffold_333-1510915933:164037..164399TCONS_00060074-exon-scaffold_333-1510915933:164037..164399Clytia hemisphaericaexon
TCONS_00060074-exon-scaffold_333-1575043694:164037..164399TCONS_00060074-exon-scaffold_333-1575043694:164037..164399Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_333supercontigscaffold_333:164037..164399 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0.621347	0	0	0	0	0.480929	0	0	0.30643	0	0.784887	0.421152	0	0.886298	0	0	0.22274	0	0	0.480289	0	0	0.31589	0.337126	1.02279	2.08413
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00060074 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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