Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00060030 ID=TCONS_00060030|Name=TCONS_00060030|organism=Clytia hemisphaerica|type=transcript|length=1576bp ttctcaagcgaagactATGCAAAgagattctagctttacgatagtgctgc ggatcatcagtggatagtaatCTATTATCAAACTTGGTTTGGCATTTTAC AAATGaGTAAATAATTTAAACAAACACAATAGTAGGTAGGTCAATACAAT GGCAACTCAAACGGCTGTATTAGATCTAGGAGCAAGTACTTGTAAATTTG GCTTGTCAACTGATGCAGACCCAAGAGTCATTCCAAATTGTATTTCCAAA GCCAAAAATGAAAGACGAAAAGTCTTCTACGGGGATCAGCTGAGTGAGTG TAAAGATTTTTCTGGATTGTTTTATGTGTTGCCCTTCCAGAAAGGTTATT TAGTAAATTGGGATGTTCAGCGTCAACTTTTTGATTACATGTTTTCAAAA GAGAATCTCAAAGTGGATGTGACAGAAACCAATTTAGTTTACACAGAGCc tatttttaattttacatCTATAAAAGAGTGTTTGGATGAGATTTTCTTTG AAGAACATCAATTTAAAGCTGTCTGTCGTAAAAGAACTGCTGAACTTGCA AATTTCAAACATGCTGCTGAATCAGCAAAGAATCCCCTGTGTAGTCTAAT TGTAGACTCTGGGTTTTCCTTCACACATATTTTGCCGGTCTGCCAAGGTC AGATTCTGAAGAGGTCTGCACGTAGAATTGATGTTGGTGGTAAAGTGATG ACAAATTATTTGAAAGAGATTATCTCTTATCGTCAGCTTCATGTGTTGGA TGAAACATATGTTATGAATCAGGTGAAAGAGGATTGTTGTTTTGTTTCCA CTGATTTTAACCATGACATGGAGACTACAAAACAGAAAAGGAAATTAAAC ACCATTGCTAGGGACTACATATTACCAGACTATACCAACGTCAAACGTGG TTACATAAGACCAATTGAAGAAATGTGGACCAAATTCACAGGTACAGAGC AATTACTGAAAATGAACAATGAGCGTTTCACTGTACCTGAATTACTTTTC AATCCATCAGATGTTGGTATACAGCAAATGGGAATACCAGAGGCTATTCA CCATTCTATCCAAACAACTGAAGTCCTTCAGCAGCCtcatttctatcaaa atatCATCCTTATTGGAGGCAATGCTGCAATACCTGGTTATCACAAACGT GTCACGTCTGATGTCCGCAAATTATGTCCAGATGTTTTTGATTTGGATAT TCTTTGTCCTGATAATCCAGCCACTTATGCATGGCAAGGAGGTGTGACAT TGTCCAAAACTGCGgattttgtttcgaaatattGCATCACTAAAGCAGAG TATGAAGAATCAGGGAAAAATATTTgctttcaaaaatttgataagTAGCT TTATTCATTGTAAAGGAGATACGACTTTGTTGATTTTGCAAACTTAATAG AACTTTGTTTTTCCTTATAATATGTTACTTGTTTTAGATTGGTCTGTCAA ACTTTGTAATTTTAGCATAGATTTATGTTTGTTAATTAATAATtacttat tttttctttttacatcttAAGCATTATTGCTTTCTTATAATTTGGGCCAA ACATTAGGATCTGTAACATCTTTTAT Run BLAST on NCBI protein sequence of TCONS_00060030-protein >TCONS_00060030-protein ID=TCONS_00060030-protein|Name=TCONS_00060030-protein|organism=Clytia hemisphaerica|type=polypeptide|length=399bp
MATQTAVLDLGASTCKFGLSTDADPRVIPNCISKAKNERRKVFYGDQLSE CKDFSGLFYVLPFQKGYLVNWDVQRQLFDYMFSKENLKVDVTETNLVYTE PIFNFTSIKECLDEIFFEEHQFKAVCRKRTAELANFKHAAESAKNPLCSL IVDSGFSFTHILPVCQGQILKRSARRIDVGGKVMTNYLKEIISYRQLHVL DETYVMNQVKEDCCFVSTDFNHDMETTKQKRKLNTIARDYILPDYTNVKR GYIRPIEEMWTKFTGTEQLLKMNNERFTVPELLFNPSDVGIQQMGIPEAI HHSIQTTEVLQQPHFYQNIILIGGNAAIPGYHKRVTSDVRKLCPDVFDLD ILCPDNPATYAWQGGVTLSKTADFVSKYCITKAEYEESGKNICFQKFDK Run BLAST on NCBI transcript from alignment at scaffold_333:227032..229387- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00060030 ID=TCONS_00060030|Name=TCONS_00060030|organism=Clytia hemisphaerica|type=transcript|length=2356bp|location=Sequence derived from alignment at scaffold_333:227032..229387- (Clytia hemisphaerica) TTCTCAAGCGAAGACTATGCAAAGAGATTCTAGCTTTACGATAGTGCTGC
GGATCATCAGTGGATAGTAATCTATTATCAAACTTGGTTTGGCATTTTAC
AAATGAGTGAGTTTGAAATTTTGACTGCCATCCCTACCTTATTAGCGTAC
ACTTGCCTAATTCCGAACGGTTTTCAATGTTTTCAATCAAATTTCAGGCA
CAAATTATCAAATGAAAAAGTTTTTGTTAACAGAACAAAGTTCAACCTTT
CCCCTATCTTTCCAAACAAAAATTTCAAATAATATTCCATTTGCCGCTAA
ATAAATATAAAACAAAAACATGCTCTCACATGTTCCTTATTACAGACATT
CTTCCCTCATCCCGGACGACGTCTCTTTTCTATAAAATCTAGTGAACTTC
CACTTGAAATCTTTCTTGAAAGTTGAAATAGAGAGCTGTAGGTAAGGTGT
TCGGAATTAGGCATTGTCCGAAATTAGGCAAGTGAACGGTAAGTGGATTA
AATTTTACATGGATCAATGTTTTTTTGCCAAAACCCCCTGGCAAAATGAA
AGGAATTAGGTATAAAAGAGCCTGATTTGCGTATAACTGTCTTAAAGTGT
TTTCAAAAATATTTGANAAGAGCCTGATTTGCGTATAACTGTCTTAAAGT
GTTTTAAAAAATATTTGAGGTTGGCTATACTGGGACCGCTAGTGCTGCCA
AGCTACTATTTTTTTGCTGGGCACAGTTTTTTTATCAATGATTGTCATTG
TCAATGATTGTTTTTCCTATTTGGCCTTAGCAATATTGCTAGTTTGAGTT
AACAGTATTTTGAACTGTATATATAATATTATCCGTTAGATTTTGTCATG
GTAAATGAGTCAAAATTTTATTCCTTTTTTTCGTAGGTAAATAATTTAAA
CAAACACAATAGTAGGTAGGTCAATACAATGGCAACTCAAACGGCTGTAT
TAGATCTAGGAGCAAGTACTTGTAAATTTGGCTTGTCAACTGATGCAGAC
CCAAGAGTCATTCCAAATTGTATTTCCAAAGCCAAAAATGAAAGACGAAA
AGTCTTCTACGGGGATCAGCTGAGTGAGTGTAAAGATTTTTCTGGATTGT
TTTATGTGTTGCCCTTCCAGAAAGGTTATTTAGTAAATTGGGATGTTCAG
CGTCAACTTTTTGATTACATGTTTTCAAAAGAGAATCTCAAAGTGGATGT
GACAGAAACCAATTTAGTTTACACAGAGCCTATTTTTAATTTTACATCTA
TAAAAGAGTGTTTGGATGAGATTTTCTTTGAAGAACATCAATTTAAAGCT
GTCTGTCGTAAAAGAACTGCTGAACTTGCAAATTTCAAACATGCTGCTGA
ATCAGCAAAGAATCCCCTGTGTAGTCTAATTGTAGACTCTGGGTTTTCCT
TCACACATATTTTGCCGGTCTGCCAAGGTCAGATTCTGAAGAGGTCTGCA
CGTAGAATTGATGTTGGTGGTAAAGTGATGACAAATTATTTGAAAGAGAT
TATCTCTTATCGTCAGCTTCATGTGTTGGATGAAACATATGTTATGAATC
AGGTGAAAGAGGATTGTTGTTTTGTTTCCACTGATTTTAACCATGACATG
GAGACTACAAAACAGAAAAGGAAATTAAACACCATTGCTAGGGACTACAT
ATTACCAGACTATACCAACGTCAAACGTGGTTACATAAGACCAATTGAAG
AAATGTGGACCAAATTCACAGGTACAGAGCAATTACTGAAAATGAACAAT
GAGCGTTTCACTGTACCTGAATTACTTTTCAATCCATCAGATGTTGGTAT
ACAGCAAATGGGAATACCAGAGGCTATTCACCATTCTATCCAAACAACTG
AAGTCCTTCAGCAGCCTCATTTCTATCAAAATATCATCCTTATTGGAGGC
AATGCTGCAATACCTGGTTATCACAAACGTGTCACGTCTGATGTCCGCAA
ATTATGTCCAGATGTTTTTGATTTGGATATTCTTTGTCCTGATAATCCAG
CCACTTATGCATGGCAAGGAGGTGTGACATTGTCCAAAACTGCGGATTTT
GTTTCGAAATATTGCATCACTAAAGCAGAGTATGAAGAATCAGGGAAAAA
TATTTGCTTTCAAAAATTTGATAAGTAGCTTTATTCATTGTAAAGGAGAT
ACGACTTTGTTGATTTTGCAAACTTAATAGAACTTTGTTTTTCCTTATAA
TATGTTACTTGTTTTAGATTGGTCTGTCAAACTTTGTAATTTTAGCATAG
ATTTATGTTTGTTAATTAATAATTACTTATTTTTTCTTTTTACATCTTAA
GCATTATTGCTTTCTTATAATTTGGGCCAAACATTAGGATCTGTAACATC
TTTTAT Coding sequence (CDS) from alignment at scaffold_333:227032..229387- >TCONS_00060030 ID=TCONS_00060030|Name=TCONS_00060030|organism=Clytia hemisphaerica|type=CDS|length=1200bp|location=Sequence derived from alignment at scaffold_333:227032..229387- (Clytia hemisphaerica) ATGGCAACTCAAACGGCTGTATTAGATCTAGGAGCAAGTACTTGTAAATT TGGCTTGTCAACTGATGCAGACCCAAGAGTCATTCCAAATTGTATTTCCA AAGCCAAAAATGAAAGACGAAAAGTCTTCTACGGGGATCAGCTGAGTGAG TGTAAAGATTTTTCTGGATTGTTTTATGTGTTGCCCTTCCAGAAAGGTTA TTTAGTAAATTGGGATGTTCAGCGTCAACTTTTTGATTACATGTTTTCAA AAGAGAATCTCAAAGTGGATGTGACAGAAACCAATTTAGTTTACACAGAG CCTATTTTTAATTTTACATCTATAAAAGAGTGTTTGGATGAGATTTTCTT TGAAGAACATCAATTTAAAGCTGTCTGTCGTAAAAGAACTGCTGAACTTG CAAATTTCAAACATGCTGCTGAATCAGCAAAGAATCCCCTGTGTAGTCTA ATTGTAGACTCTGGGTTTTCCTTCACACATATTTTGCCGGTCTGCCAAGG TCAGATTCTGAAGAGGTCTGCACGTAGAATTGATGTTGGTGGTAAAGTGA TGACAAATTATTTGAAAGAGATTATCTCTTATCGTCAGCTTCATGTGTTG GATGAAACATATGTTATGAATCAGGTGAAAGAGGATTGTTGTTTTGTTTC CACTGATTTTAACCATGACATGGAGACTACAAAACAGAAAAGGAAATTAA ACACCATTGCTAGGGACTACATATTACCAGACTATACCAACGTCAAACGT GGTTACATAAGACCAATTGAAGAAATGTGGACCAAATTCACAGGTACAGA GCAATTACTGAAAATGAACAATGAGCGTTTCACTGTACCTGAATTACTTT TCAATCCATCAGATGTTGGTATACAGCAAATGGGAATACCAGAGGCTATT CACCATTCTATCCAAACAACTGAAGTCCTTCAGCAGCCTCATTTCTATCA AAATATCATCCTTATTGGAGGCAATGCTGCAATACCTGGTTATCACAAAC GTGTCACGTCTGATGTCCGCAAATTATGTCCAGATGTTTTTGATTTGGAT ATTCTTTGTCCTGATAATCCAGCCACTTATGCATGGCAAGGAGGTGTGAC ATTGTCCAAAACTGCGGATTTTGTTTCGAAATATTGCATCACTAAAGCAG AGTATGAAGAATCAGGGAAAAATATTTGCTTTCAAAAATTTGATAAGTAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
Feature Name | Unique Name | Species | Type |
TCONS_00060030-exon-scaffold_333-1575043694:229282..229387 | TCONS_00060030-exon-scaffold_333-1575043694:229282..229387 | Clytia hemisphaerica | exon |
TCONS_00060030-exon-scaffold_333-1575043694:227032..228501 | TCONS_00060030-exon-scaffold_333-1575043694:227032..228501 | Clytia hemisphaerica | exon |
TCONS_00060030-exon-scaffold_333-1510915933:229282..229387 | TCONS_00060030-exon-scaffold_333-1510915933:229282..229387 | Clytia hemisphaerica | exon |
TCONS_00060030-exon-scaffold_333-1510915933:227032..228501 | TCONS_00060030-exon-scaffold_333-1510915933:227032..228501 | Clytia hemisphaerica | exon |
TCONS_00060030-exon-scaffold_333-1491911889:229282..229387 | TCONS_00060030-exon-scaffold_333-1491911889:229282..229387 | Clytia hemisphaerica | exon |
TCONS_00060030-exon-scaffold_333-1491911889:227032..228501 | TCONS_00060030-exon-scaffold_333-1491911889:227032..228501 | Clytia hemisphaerica | exon |
Position
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
scaffold_333 | supercontig | scaffold_333:227032..229387 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
Term | Definition |
IPR004000 | Actin |
Blast
BLAST of TCONS_00060030 vs. Swiss-Prot (Human)
Match: ARP6 (Actin-related protein 6 OS=Homo sapiens GN=ACTR6 PE=1 SV=1) HSP 1 Score: 440.269 bits (1131), Expect = 2.446e-150 Identity = 211/396 (53.28%), Postives = 288/396 (72.73%), Query Frame = 2 Query: 161 TAVLDLGASTCKFGLSTDADPRVIPNCISKAKNERRKVFYGDQLSECKDFSGLFYVLPFQKGYLVNWDVQRQLFDYMFSKENLKVDVTETNLVYTEPIFNFTSIKECLDEIFFEEHQFKAVCRKRTAELANFKHAAESAKNPLCSLIVDSGFSFTHILPVCQGQILKRSARRIDVGGKVMTNYLKEIISYRQLHVLDETYVMNQVKEDCCFVSTDFNHDMETTKQKRKLNTIARDYILPDYTNVKRGYIRPIEEMWT--KFTGTEQLLKMNNERFTVPELLFNPSDVGIQQMGIPEAIHHSIQTTEVLQQPHFYQNIILIGGNAAIPGYHKRVTSDVRKLCPDVFDLDILCPDNPATYAWQGGVTLSKTADFVSKYCITKAEYEESGKNICFQKFD 1342
T VLD GA K G S + + VIPNC ++K R K F +Q+ E KD SGLFY+LPFQKGYLVNWDVQRQ++DY+F KE +VD +TN++ TEP FNFTSI+E ++EI FEE+QF+AV R L+ ++ ++ LC +IVDSG+SFTHI+P C+ + K + RI+VGGK++TN+LKEIISYRQLHV+DET+V+NQVKED C+VS DF DM+ K K + NT+ DY+LPD++ +K+G+ +P EEM K+ EQ+L++ NERF VPE+LFNPSD+GIQ+MGIPEAI +SIQ QPHF++NI+L GGN+ PG+ RV S+VR L P +D+ ++ P+NP TYAW+GG +S+ DF +T+ +YEE+G ++C +KFD
Sbjct: 3 TLVLDNGAYNAKIGYSHE-NVSVIPNCQFRSKTARLKTFTANQIDEIKDPSGLFYILPFQKGYLVNWDVQRQVWDYLFGKEMYQVDFLDTNIIITEPYFNFTSIQESMNEILFEEYQFQAVLRVNAGALSAHRYFRDNPSE-LCCIIVDSGYSFTHIVPYCRSKKKKEAIIRINVGGKLLTNHLKEIISYRQLHVMDETHVINQVKEDVCYVSQDFYRDMDIAKLKGEENTVMIDYVLPDFSTIKKGFCKPREEMVLSGKYKSGEQILRLANERFAVPEILFNPSDIGIQEMGIPEAIVYSIQNLPEEMQPHFFKNIVLTGGNSLFPGFRDRVYSEVRCLTPTDYDVSVVLPENPITYAWEGGKLISENDDF-EDMVVTREDYEENGHSVCEEKFD 395
The following BLAST results are available for this feature:
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