TCONS_00060030 (transcript) - C. hemisphaerica

Overview
NameTCONS_00060030
Unique NameTCONS_00060030
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1576

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00060030 ID=TCONS_00060030|Name=TCONS_00060030|organism=Clytia hemisphaerica|type=transcript|length=1576bp
ttctcaagcgaagactATGCAAAgagattctagctttacgatagtgctgc
ggatcatcagtggatagtaatCTATTATCAAACTTGGTTTGGCATTTTAC
AAATGaGTAAATAATTTAAACAAACACAATAGTAGGTAGGTCAATACAAT
GGCAACTCAAACGGCTGTATTAGATCTAGGAGCAAGTACTTGTAAATTTG
GCTTGTCAACTGATGCAGACCCAAGAGTCATTCCAAATTGTATTTCCAAA
GCCAAAAATGAAAGACGAAAAGTCTTCTACGGGGATCAGCTGAGTGAGTG
TAAAGATTTTTCTGGATTGTTTTATGTGTTGCCCTTCCAGAAAGGTTATT
TAGTAAATTGGGATGTTCAGCGTCAACTTTTTGATTACATGTTTTCAAAA
GAGAATCTCAAAGTGGATGTGACAGAAACCAATTTAGTTTACACAGAGCc
tatttttaattttacatCTATAAAAGAGTGTTTGGATGAGATTTTCTTTG
AAGAACATCAATTTAAAGCTGTCTGTCGTAAAAGAACTGCTGAACTTGCA
AATTTCAAACATGCTGCTGAATCAGCAAAGAATCCCCTGTGTAGTCTAAT
TGTAGACTCTGGGTTTTCCTTCACACATATTTTGCCGGTCTGCCAAGGTC
AGATTCTGAAGAGGTCTGCACGTAGAATTGATGTTGGTGGTAAAGTGATG
ACAAATTATTTGAAAGAGATTATCTCTTATCGTCAGCTTCATGTGTTGGA
TGAAACATATGTTATGAATCAGGTGAAAGAGGATTGTTGTTTTGTTTCCA
CTGATTTTAACCATGACATGGAGACTACAAAACAGAAAAGGAAATTAAAC
ACCATTGCTAGGGACTACATATTACCAGACTATACCAACGTCAAACGTGG
TTACATAAGACCAATTGAAGAAATGTGGACCAAATTCACAGGTACAGAGC
AATTACTGAAAATGAACAATGAGCGTTTCACTGTACCTGAATTACTTTTC
AATCCATCAGATGTTGGTATACAGCAAATGGGAATACCAGAGGCTATTCA
CCATTCTATCCAAACAACTGAAGTCCTTCAGCAGCCtcatttctatcaaa
atatCATCCTTATTGGAGGCAATGCTGCAATACCTGGTTATCACAAACGT
GTCACGTCTGATGTCCGCAAATTATGTCCAGATGTTTTTGATTTGGATAT
TCTTTGTCCTGATAATCCAGCCACTTATGCATGGCAAGGAGGTGTGACAT
TGTCCAAAACTGCGgattttgtttcgaaatattGCATCACTAAAGCAGAG
TATGAAGAATCAGGGAAAAATATTTgctttcaaaaatttgataagTAGCT
TTATTCATTGTAAAGGAGATACGACTTTGTTGATTTTGCAAACTTAATAG
AACTTTGTTTTTCCTTATAATATGTTACTTGTTTTAGATTGGTCTGTCAA
ACTTTGTAATTTTAGCATAGATTTATGTTTGTTAATTAATAATtacttat
tttttctttttacatcttAAGCATTATTGCTTTCTTATAATTTGGGCCAA
ACATTAGGATCTGTAACATCTTTTAT
Run BLAST on NCBI

protein sequence of TCONS_00060030-protein

>TCONS_00060030-protein ID=TCONS_00060030-protein|Name=TCONS_00060030-protein|organism=Clytia hemisphaerica|type=polypeptide|length=399bp
MATQTAVLDLGASTCKFGLSTDADPRVIPNCISKAKNERRKVFYGDQLSE
CKDFSGLFYVLPFQKGYLVNWDVQRQLFDYMFSKENLKVDVTETNLVYTE
PIFNFTSIKECLDEIFFEEHQFKAVCRKRTAELANFKHAAESAKNPLCSL
IVDSGFSFTHILPVCQGQILKRSARRIDVGGKVMTNYLKEIISYRQLHVL
DETYVMNQVKEDCCFVSTDFNHDMETTKQKRKLNTIARDYILPDYTNVKR
GYIRPIEEMWTKFTGTEQLLKMNNERFTVPELLFNPSDVGIQQMGIPEAI
HHSIQTTEVLQQPHFYQNIILIGGNAAIPGYHKRVTSDVRKLCPDVFDLD
ILCPDNPATYAWQGGVTLSKTADFVSKYCITKAEYEESGKNICFQKFDK
Run BLAST on NCBI

transcript from alignment at scaffold_333:227032..229387-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00060030 ID=TCONS_00060030|Name=TCONS_00060030|organism=Clytia hemisphaerica|type=transcript|length=2356bp|location=Sequence derived from alignment at scaffold_333:227032..229387- (Clytia hemisphaerica)
TTCTCAAGCGAAGACTATGCAAAGAGATTCTAGCTTTACGATAGTGCTGC GGATCATCAGTGGATAGTAATCTATTATCAAACTTGGTTTGGCATTTTAC AAATGAGTGAGTTTGAAATTTTGACTGCCATCCCTACCTTATTAGCGTAC ACTTGCCTAATTCCGAACGGTTTTCAATGTTTTCAATCAAATTTCAGGCA CAAATTATCAAATGAAAAAGTTTTTGTTAACAGAACAAAGTTCAACCTTT CCCCTATCTTTCCAAACAAAAATTTCAAATAATATTCCATTTGCCGCTAA ATAAATATAAAACAAAAACATGCTCTCACATGTTCCTTATTACAGACATT CTTCCCTCATCCCGGACGACGTCTCTTTTCTATAAAATCTAGTGAACTTC CACTTGAAATCTTTCTTGAAAGTTGAAATAGAGAGCTGTAGGTAAGGTGT TCGGAATTAGGCATTGTCCGAAATTAGGCAAGTGAACGGTAAGTGGATTA AATTTTACATGGATCAATGTTTTTTTGCCAAAACCCCCTGGCAAAATGAA AGGAATTAGGTATAAAAGAGCCTGATTTGCGTATAACTGTCTTAAAGTGT TTTCAAAAATATTTGANAAGAGCCTGATTTGCGTATAACTGTCTTAAAGT GTTTTAAAAAATATTTGAGGTTGGCTATACTGGGACCGCTAGTGCTGCCA AGCTACTATTTTTTTGCTGGGCACAGTTTTTTTATCAATGATTGTCATTG TCAATGATTGTTTTTCCTATTTGGCCTTAGCAATATTGCTAGTTTGAGTT AACAGTATTTTGAACTGTATATATAATATTATCCGTTAGATTTTGTCATG GTAAATGAGTCAAAATTTTATTCCTTTTTTTCGTAGGTAAATAATTTAAA CAAACACAATAGTAGGTAGGTCAATACAATGGCAACTCAAACGGCTGTAT TAGATCTAGGAGCAAGTACTTGTAAATTTGGCTTGTCAACTGATGCAGAC CCAAGAGTCATTCCAAATTGTATTTCCAAAGCCAAAAATGAAAGACGAAA AGTCTTCTACGGGGATCAGCTGAGTGAGTGTAAAGATTTTTCTGGATTGT TTTATGTGTTGCCCTTCCAGAAAGGTTATTTAGTAAATTGGGATGTTCAG CGTCAACTTTTTGATTACATGTTTTCAAAAGAGAATCTCAAAGTGGATGT GACAGAAACCAATTTAGTTTACACAGAGCCTATTTTTAATTTTACATCTA TAAAAGAGTGTTTGGATGAGATTTTCTTTGAAGAACATCAATTTAAAGCT GTCTGTCGTAAAAGAACTGCTGAACTTGCAAATTTCAAACATGCTGCTGA ATCAGCAAAGAATCCCCTGTGTAGTCTAATTGTAGACTCTGGGTTTTCCT TCACACATATTTTGCCGGTCTGCCAAGGTCAGATTCTGAAGAGGTCTGCA CGTAGAATTGATGTTGGTGGTAAAGTGATGACAAATTATTTGAAAGAGAT TATCTCTTATCGTCAGCTTCATGTGTTGGATGAAACATATGTTATGAATC AGGTGAAAGAGGATTGTTGTTTTGTTTCCACTGATTTTAACCATGACATG GAGACTACAAAACAGAAAAGGAAATTAAACACCATTGCTAGGGACTACAT ATTACCAGACTATACCAACGTCAAACGTGGTTACATAAGACCAATTGAAG AAATGTGGACCAAATTCACAGGTACAGAGCAATTACTGAAAATGAACAAT GAGCGTTTCACTGTACCTGAATTACTTTTCAATCCATCAGATGTTGGTAT ACAGCAAATGGGAATACCAGAGGCTATTCACCATTCTATCCAAACAACTG AAGTCCTTCAGCAGCCTCATTTCTATCAAAATATCATCCTTATTGGAGGC AATGCTGCAATACCTGGTTATCACAAACGTGTCACGTCTGATGTCCGCAA ATTATGTCCAGATGTTTTTGATTTGGATATTCTTTGTCCTGATAATCCAG CCACTTATGCATGGCAAGGAGGTGTGACATTGTCCAAAACTGCGGATTTT GTTTCGAAATATTGCATCACTAAAGCAGAGTATGAAGAATCAGGGAAAAA TATTTGCTTTCAAAAATTTGATAAGTAGCTTTATTCATTGTAAAGGAGAT ACGACTTTGTTGATTTTGCAAACTTAATAGAACTTTGTTTTTCCTTATAA TATGTTACTTGTTTTAGATTGGTCTGTCAAACTTTGTAATTTTAGCATAG ATTTATGTTTGTTAATTAATAATTACTTATTTTTTCTTTTTACATCTTAA GCATTATTGCTTTCTTATAATTTGGGCCAAACATTAGGATCTGTAACATC TTTTAT

Coding sequence (CDS) from alignment at scaffold_333:227032..229387-

>TCONS_00060030 ID=TCONS_00060030|Name=TCONS_00060030|organism=Clytia hemisphaerica|type=CDS|length=1200bp|location=Sequence derived from alignment at scaffold_333:227032..229387- (Clytia hemisphaerica)
ATGGCAACTCAAACGGCTGTATTAGATCTAGGAGCAAGTACTTGTAAATT
TGGCTTGTCAACTGATGCAGACCCAAGAGTCATTCCAAATTGTATTTCCA
AAGCCAAAAATGAAAGACGAAAAGTCTTCTACGGGGATCAGCTGAGTGAG
TGTAAAGATTTTTCTGGATTGTTTTATGTGTTGCCCTTCCAGAAAGGTTA
TTTAGTAAATTGGGATGTTCAGCGTCAACTTTTTGATTACATGTTTTCAA
AAGAGAATCTCAAAGTGGATGTGACAGAAACCAATTTAGTTTACACAGAG
CCTATTTTTAATTTTACATCTATAAAAGAGTGTTTGGATGAGATTTTCTT
TGAAGAACATCAATTTAAAGCTGTCTGTCGTAAAAGAACTGCTGAACTTG
CAAATTTCAAACATGCTGCTGAATCAGCAAAGAATCCCCTGTGTAGTCTA
ATTGTAGACTCTGGGTTTTCCTTCACACATATTTTGCCGGTCTGCCAAGG
TCAGATTCTGAAGAGGTCTGCACGTAGAATTGATGTTGGTGGTAAAGTGA
TGACAAATTATTTGAAAGAGATTATCTCTTATCGTCAGCTTCATGTGTTG
GATGAAACATATGTTATGAATCAGGTGAAAGAGGATTGTTGTTTTGTTTC
CACTGATTTTAACCATGACATGGAGACTACAAAACAGAAAAGGAAATTAA
ACACCATTGCTAGGGACTACATATTACCAGACTATACCAACGTCAAACGT
GGTTACATAAGACCAATTGAAGAAATGTGGACCAAATTCACAGGTACAGA
GCAATTACTGAAAATGAACAATGAGCGTTTCACTGTACCTGAATTACTTT
TCAATCCATCAGATGTTGGTATACAGCAAATGGGAATACCAGAGGCTATT
CACCATTCTATCCAAACAACTGAAGTCCTTCAGCAGCCTCATTTCTATCA
AAATATCATCCTTATTGGAGGCAATGCTGCAATACCTGGTTATCACAAAC
GTGTCACGTCTGATGTCCGCAAATTATGTCCAGATGTTTTTGATTTGGAT
ATTCTTTGTCCTGATAATCCAGCCACTTATGCATGGCAAGGAGGTGTGAC
ATTGTCCAAAACTGCGGATTTTGTTTCGAAATATTGCATCACTAAAGCAG
AGTATGAAGAATCAGGGAAAAATATTTGCTTTCAAAAATTTGATAAGTAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_037772XLOC_037772Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00060030-proteinTCONS_00060030-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00060030-exon-scaffold_333-1575043694:229282..229387TCONS_00060030-exon-scaffold_333-1575043694:229282..229387Clytia hemisphaericaexon
TCONS_00060030-exon-scaffold_333-1575043694:227032..228501TCONS_00060030-exon-scaffold_333-1575043694:227032..228501Clytia hemisphaericaexon
TCONS_00060030-exon-scaffold_333-1510915933:229282..229387TCONS_00060030-exon-scaffold_333-1510915933:229282..229387Clytia hemisphaericaexon
TCONS_00060030-exon-scaffold_333-1510915933:227032..228501TCONS_00060030-exon-scaffold_333-1510915933:227032..228501Clytia hemisphaericaexon
TCONS_00060030-exon-scaffold_333-1491911889:229282..229387TCONS_00060030-exon-scaffold_333-1491911889:229282..229387Clytia hemisphaericaexon
TCONS_00060030-exon-scaffold_333-1491911889:227032..228501TCONS_00060030-exon-scaffold_333-1491911889:227032..228501Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_333supercontigscaffold_333:227032..229387 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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min expression (1.21252 tpm) - - (49.9028 tpm) max expressionaGrOo_1GrOo_2FGOo_1FGOo_2EG_1EG_2P1_1P1_2P2_1P2_2P3_1P3_2PoPr_1PoPr_2St_1St_2GO_1GO_2PH_1PH_2BMF_1BMF_2MMF_1MMF_2M_1M_2GEC_1GEC_2GEN_1GEN_2
Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
39.8898 38.2914 12.048 9.08466 9.48475 7.88217 8.5085 9.43372 5.88305 5.17412 3.54967 3.26678 3.50389 2.81426 4.61267 4.68125 5.61105 4.71274 1.2139 1.21252 2.48419 4.00228 49.9028 41.4461 6.63177 7.83357 3.02487 3.34216 21.2011 25.2104
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR004000Actin
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00060030 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
ZOOM
x 1
POSITION
0
200400600800100012001400Expect = 2.45e-150 / Id = 53.28SequenceARP6
Match NameE-valueIdentityDescription
ARP62.446e-15053.28Actin-related protein 6 OS=Homo sapiens GN=ACTR6 P... [more]
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