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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00060058 ID=TCONS_00060058|Name=TCONS_00060058|organism=Clytia hemisphaerica|type=transcript|length=1213bp
GGATTTGAGTTTTGTGAGAGCCACTCTTTGATAGTCTTACATGAGAATCT
ATTAATTCACGTTTGAGACGAATTTTCAAGATCAGATTAAACAAGAAgga
tttgtatttttgaaggaagaGAGTAAATTTTTCATGTCAGAAAGATATTT
TCCAGATGTATCTTGCACCAAGCCACACAGAAATGACTTTCAATAGAGAG
CTTCAAATAAGCTTACTTTCAATATCATGTGTCGCCATCGCTGTAGTTAA
CCTCGTTTGCATCATTGTCATCGTCAACTCAACAAAACTTCGTCGCAAAC
CTCCCACAATCTTAATCGGGAATTTGATCGGAACACATATGATTCAAGGA
ATATGCGTACTACCTTTATACATCTTACGCATCAAGAATCCTGCACTTGT
TGCGATTTGTGATGGATTTTATTTTACCTATATGTTAACATTCTATAGTG
CTACTATCAGTGTTTTTCTACTCAGCTTGGATCGAGTTTTAGCTGTTATT
TTGTTAAACTCCTATGATAAATATGTGACAATGAATAATGTTATCAAAGT
CACTGTCATTGCTTGGAGCTATATATTTGCCTTATGTTTAATGCCATTCT
TCAAACTTGAAAGATCTAAAGCTTTGAAACATTCGATATGTACATACCTT
CAACCTAGAGCATGGACTATATTCATGTTAACCGTAAACGCATTAATTCC
TTACGTATTTATAGTTATCGGTTACGTTTATGTACGcgttaaattgaaaa
aattatcggCGTATTTCGCAGCTGCGGAAGTAACGAAAGACGGGGACCAA
CGTGAACGTAAGAAACGTGAAAGACGTACGAAGAAGTTTAAGAAACGTAG
TAAAATCACTAAATTGACATTCCTTATAGTTTTCACGTATGGTGTAACAT
GGGCTCCATCTATCATTTACTATCTGGTACAACACATATGCACCAGTTGT
ATTCCCGATAAATATTACCAGAGTGAATTAAAAGACATTCTATCGTTCTT
GATGAAGTATATCAATTTCTTTGATGCAATGATCGCACCAGTGTTATATT
GTTATTTTCATGATGAATTTCGACATGAATTTAAGAGGATTATATTACGG
AAGGAGAAGACGATATCAACAAGTAGCTTTATATCAGACTCCAATGCTGT
AAGCACAATGTCGACCAATACATTCGCTTTGAAGGAAACGACGAGTATAA
GATCTAATTGAGT Run BLAST on NCBI transcript from alignment at scaffold_333:361403..369735- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00060058 ID=TCONS_00060058|Name=TCONS_00060058|organism=Clytia hemisphaerica|type=transcript|length=8333bp|location=Sequence derived from alignment at scaffold_333:361403..369735- (Clytia hemisphaerica)
GGATTTGAGTTTTGTGAGAGCCACTCTTTGATAGTCTTACATGAGAATCT
ATTAATTCACGTTTGAGACGAATTTTCAAGATCAGATTAAACAAGAAGGA
TTTGTATTTTTGAAGGAAGAGAGTAAATTTTTCATGTCAGAAAGATATTT
TCCAGATGTATCTTGCACCAAGCCACACAGGTAATCATTCTGATTTGTTT
CTCCTGTTCAAATATTCGGGTACGAACATGTTTCCTGGTTATGGTACAAG
GTCCTACAGGACGATGTATATCTACCGCCTGACTTTTGAAAATCCGAAAT
TTTGGAGGGTCTGAAATTTAGGAAATAAGCAAATATCTAGAAGATCTTCC
TGTTATAGATATAGTCAATATCTTACGTAATAAGTTGACAAGAGGCGCGC
TCCACCCACGACCACCCTTGTATGAAGACAATGCACTTTGGCGAAATTGA
AACCAAACCCGGAATTTAACGTTTCTTAGTTAAATAACAGATAGCACAGT
AACTTAAGACTTTTAGACAGCCTTTCGATTATTTTCATTGGGTCAGCGGC
AAGCCAGATTGGTTATCTTCTATGAAATGAAAGGAAAATTTGAGGAAGTA
GGGCTTTGAGCTGAGAGTAATGAAGTATAAGCCCGAAGGGCTAAAATCGA
ATCTTTAACGTTTCAGACAAGAAAAAGTGAAGCCTTAAAATATGCGCCGT
ATTTTTTATGACGGACTGAATCTAGCGATTCCTTTGTTTTTGAGTGATAT
ATTTTTATATATATATAATAGGACTCAATATTGACAAATTCAAAATTTAC
ATACACGTCTGCCGGGTTTGAAGGGTTAAATAAACCCTTGAAAAATATTT
TAATGCTTAAAACAATTTCTAATGACCTCCAAAATTGACCCAGGCCTAAA
AGAATTGAGACAGGTTCGTGTGTTAAAATATGTCACAAGTATCATTAAAA
GTGAATAATTTCTTTACTGACAAATATTTTTGACAGTATAATATTTTTGC
CGGCGATAACTTTCACTNACTTTGGCGAAATTGAAACCAAACCCGGAATT
TAACGTTTCTTAGTTAAATAACAGATAGCACAGTAACTTAAGACTTTTAG
ACAGCCTTTCGATTATTTTCATTGGGTCAGCGGCAAGCCAGATTGGTTAT
CTTCTATGAAATGAAAGGAAAATTTGAGGGAGTAGGGCTTTGAGCTGAGA
GTAATGAAGTATAAGCCCGAAGGGCTAAAATCGAATCTTTAACGTTTCAG
ACAAGAAAAAGTGAAGCCTTAAAATATGCGCCGTATTTTTTATGACGGAC
TGAATCTAGCGATTCCTTTGTTTTTGAGTGATATATTTTTATATATATAT
AATAGGACTCAATATTGACAAATTCAAAATTTACATACACGTCTGCCGGG
TTTGAAGGGTTAAATAAACCCTTGAAAAATATTTTAATGCTTAAAACAAT
TTCTAATGACCTCCAAAATTGACCCAGGCCTAAAAGAATTGAGACAGGTT
CGTGTGTTAAAATATGTCACAAGTATCATTAAAAGTGAATAATTTCTTTA
CTGACAAATATTTTTGACAGTATAATATTTTTGCCGGCGATAACTTTCAC
CATCGATGCTTTCACTGACTTTTATTTCTTTTCAACACCAGATGGTTTTA
ATTTATTTAGGCAAATTTGATTGGATTCAATGATCGCTATGCGACGGAGA
CGGTTAGCTTCTGGTTGATTCGTCCAGAGATTTGGGAAAAGAGGATAAGA
ATCGCCGCTGCCGCTCGCTGTTTTCTCATTGTTGACCATTGAATTCGGCG
TCGTCTGAAGTCGCTAGGCTAGGGAACAACTTGGCCAAGAAGGTACTGCG
AAAAAAATGGCGCTATGTGCAGTATTATAACAGTTCAAGAAAAACTGTCT
GAATTTACTCCTTTGGAGGGGTTTCCTACTTGATATAAACAACTGAAAAG
CAAATAACGATCTTTTGGGGTTTCCACTGACAAAAAAATCTGCTGTTGCA
TGCTTTATTTTTTGAGAAAAAGATGGCGGAAGCANNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCGTTTTGTGTTTGAATGCA
ATGAATTTTAAATTCTTTTTCACTAGTAATTATTTCTATTTCTACAATAT
AATCTGTGACATTGGTTCGAGCATTCCTTGAATAAAGTATTTTGGCTAAA
ACTGAAAGTTTTTGGCTCGACTAACACTGTATCCGCCTTGTCCAAAATGA
AAAGTGCTTATAAAAAATACCAAAATCCCCGATATTAGAAATATTTTTAT
TTCACTTTCGATATCAACCACGGCTGCCATTTTTTGTTTGTACTTCTAGT
CTTGTGCGCATAGAATAATCAAGCGCTCCGATTGGCTCAGAACTAAAACA
ATCGATCGGTCGCAGATATTTCAATAGAACAAAAGGCTCCCTAGCCTATA
TTTCTATAGCTGAATAGCGCAATTCTTATCCTCTTTTCCCAAATCTCTGA
TTCGTCTAACAGATCTTGACTGACTGAGGACGATGATAAACAAGCACTTT
TACCGCCCTCAATTTGACGGCTCAGACTATGGGTTAATCCAAATCGCTTC
CGCAAATCCGCTCGCTATTATCTTGCCAAGCACCGAAAACATCGCCGATG
AAATGTGAAATAAATTCTATAAGTAAAGAAAAAGATTTAACTGCTGAATT
TTATGACGTGAAATGTTAGAAGTTTTTTCCAGAGCGAGGATAAATTTTTT
ATTTAAATCCGAATCGGGAAAATTCTATTTATTCAAGCTTAAAAATCCAT
TAGGATAGTTTTGGAGTACGAAATCAAAGTCAATTTTAGGATATTTTCTC
CACCGGGGACAAAATTTTGGCCGATTTGGGTCTATGATGGAAAGAATAAA
CCCTCTCCCATTGACTAATTATTTTTTAATCTGATTTTTCTATGAAAGAA
TGTCTGAAAAGATGTCAAATAAGCATCTTACATACTTTAAGGCACATACG
AAATATTTTTCTCTATTATTTTTCATATCCAATACTTTAACATTACCATA
CTAGTGAAATTTAAAATATGTGCTGTGTCATAGAGTCATTCAAACAAGAC
TGTTTTCTTTTTGTTACAAGAGTACAGAGGCCATCAAAAGGGTCATGAGT
TGTAGTCAAGAACTAAAAAAATAACAAACAAAGCAGAAAATATAAGATTT
ATGATCAGTGGGTTGTGTTAGAAAAACCACCAATCTGAAGTAGTCTTGAT
CAAAGATTGTTATGTTTTAAATATTTTAAGCACAGATGAACACACCTGAA
ATTGGTATTTAAAGTTTGATTTGAAGTGGTTGTTGAAGGGCTGTTAAAAG
TTAAGCTCTCATAATTGTTAGTATTTGATTTTTTTTTTTTTTTTTTTTNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATCACG
CCACTGCGTGTTAACTTATACCTGGCTCGCCTGAATCAAATGGGATTGAC
TATGCTGTTCAGGGCTGGATGGTTTTCAAGTTTAGGGCATCTGAATCATA
TGCAATAGAAAATAAGACTTACTACAAACTTTAGACCTCAGATTTTTAAA
ATTCTTTTCCTTTACCCATGTATGCTGATTCCCAGATGAAATGCCGTCAG
ACTTTTTTATTTATGCATCGGTTTTAACACACAAGTTTTTTTGACATTTT
AATATGTCAATCTTTCCGGTCTGGCTTTTTGACACAATGAACAAAGGTAG
CCACTTGATAGTCCGAAACAGAAAGCTTAAAGTTTTAAGTGCATATTTAA
CATAAGAAACAGAAACTTACGTGAAATCATCTAGCAAAGTAATATTTTAA
ATGTCTTTTAGCTAAATGGAAGCGTTTTGGGTGAGTGAGATGTTATTTGC
AGGGAAACATTTTTAATTTTAGAAATGACTTACTATAGGGACTATTAGTG
AGGTTAAGTAAATCGGCAAAATCACGACGACGAACGAAAATTTAACAGGC
TAGTGAGTTTCAACCAATCACATTCCTTATTTTCACTAGCCTATTACATT
TTTCGTCCGTCGTCGTGATTATCCTGGTATGCTTAACCTCAGTATTATCA
GTGTTTCAAACAATCTGTGGCAAGCTGAAGATGGCTAAGAAAAAATCATT
TAAGACGGTTTTTTCATTACGGGATGAATTTCAAATTCAATGTCCTAGGG
ACATTAAGTAACATTCTATGCTCAACTCTCTTAGTCACACAGATGTATGG
GTTTAGAAACTAAAGTAATTTTTGTAACGTCTTTATTTCTTTACTTTCAG
AAATGACTTTCAATAGAGAGCTTCAAATAAGCTTACTTTCAATATCATGT
GTCGCCATCGCTGTAGTTAACCTCGTTTGCATCATTGTCATCGTCAACTC
AACAAAACTTCGTCGCAAACCTCCCACAATCTTAATCGGGAATTTGATCG
GAACACATATGATTCAAGGAATATGCGTACTACCTTTATACATCTTACGC
ATCAAGAATCCTGCACTTGTTGCGATTTGTGATGGATTTTATTTTACCTA
TATGTTAACATTCTATAGTGCTACTATCAGTGTTTTTCTACTCAGCTTGG
ATCGAGTTTTAGCTGTTATTTTGTTAAACTCCTATGATAAATATGTGACA
ATGAATAATGTTATCAAAGTCACTGTCATTGCTTGGAGCTATATATTTGC
CTTATGTTTAATGCCATTCTTCAAACTTGAAAGATCTAAAGCTTTGAAAC
ATTCGATATGTACATACCTTCAACCTAGAGCATGGACTATATTCATGTTA
ACCGTAAACGCATTAATTCCTTACGTATTTATAGTTATCGGTTACGTTTA
TGTACGCGTTAAATTGAAAAAATTATCGGCGTATTTCGCAGCTGCGGAAG
TAACGAAAGACGGGGACCAACGTGAACGTAAGAAACGTGAAAGACGTACG
AAGAAGTTTAAGAAACGTAGTAAAATCACTAAATTGACATTCCTTATAGT
TTTCACGTATGGTGTAACATGGGCTCCATCTATCATTTACTATCTGGTAC
AACACATATGCACCAGTTGTATTCCCGATAAATATTACCAGAGTGAATTA
AAAGACATTCTATCGTTCTTGATGAAGTATATCAATTTCTTTGATGCAAT
GATCGCACCAGTGTTATATTGTTATTTTCATGATGAATTTCGACATGAAT
TTAAGAGGATTATATTACGGAAGGAGAAGACGATATCAACAAGTAGCTTT
ATATCAGACTCCAATGCTGTAAGCACAATGTCGACCAATACATTCGCTTT
GAAGGAAACGACGAGTATAAGATCTAATTGAGT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00060058-exon-scaffold_333-1575043694:369556..369735 | TCONS_00060058-exon-scaffold_333-1575043694:369556..369735 | Clytia hemisphaerica | exon |
| TCONS_00060058-exon-scaffold_333-1575043694:361403..362435 | TCONS_00060058-exon-scaffold_333-1575043694:361403..362435 | Clytia hemisphaerica | exon |
| TCONS_00060058-exon-scaffold_333-1510915933:369556..369735 | TCONS_00060058-exon-scaffold_333-1510915933:369556..369735 | Clytia hemisphaerica | exon |
| TCONS_00060058-exon-scaffold_333-1510915933:361403..362435 | TCONS_00060058-exon-scaffold_333-1510915933:361403..362435 | Clytia hemisphaerica | exon |
| TCONS_00060058-exon-scaffold_333-1491911889:369556..369735 | TCONS_00060058-exon-scaffold_333-1491911889:369556..369735 | Clytia hemisphaerica | exon |
| TCONS_00060058-exon-scaffold_333-1491911889:361403..362435 | TCONS_00060058-exon-scaffold_333-1491911889:361403..362435 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
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| scaffold_333 | supercontig | scaffold_333:361403..369735 - |
Blast
The following BLAST results are available for this feature:
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