TCONS_00060161 (transcript) - C. hemisphaerica

Overview
NameTCONS_00060161
Unique NameTCONS_00060161
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length961

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00060161 ID=TCONS_00060161|Name=TCONS_00060161|organism=Clytia hemisphaerica|type=transcript|length=961bp
CCGGTTTCCAGAATTTTATTTCTTCTCAAACAATGAAAGCCCTCGCTGGC
CCTCGCCCTCAGCTGTTTGCGTGAATAgacaaaattgaattgaaaaaagc
ttttgacgAAAGTGCATCTGACCAATGGCTTTATAAATTTAAAAtcgaca
aaaaatattttataaattttcagaaTGAATTATATTGAAATCTAATATTG
AAATAATGAAATTGAAGTTAATTAGAAATATATTAAAATTCAATATCAAT
TagatttatcaaaacaaaatgttcaATCTACAAGAGGGAGCAATTCAATA
TAATCCCATATTAAACCAGATTTCCACCATGGATTCTCTCTATCAGCAAA
CCAAACAAGTACTTCATTTTCATTATCATCCAGGGAAATCAATTCATTCA
CTACAAAATCAAACCAACCAGACTCTTTATCATGATTCTTAAATGAACAG
CCAgcagaaaaattttctaaaggtGTCCCTTCATTAATATATGCTCGAAT
TTTTTCCCAATCGTTGGTATGAAAATTAAATGCATTTTCAAAATTGGCAT
CATTTTTATTGCTCCTCCAACAAGACTTGATATGAACCATTTCCCCACCA
TCTCCTGAAGGCCAGTAAAAATCTTCTCCAAACTTCATTCTCATAACAAA
CTGATATTCGCCACGCTTAACCAGTTTAAAAGTGTGTTTCATCTCAAGCC
AACAAACATTTTTAAGCCTCAAAACATCATGTTGGGTATGTTCATCAAAC
TCTCTTGAAAAGTATTCAGGATTTGTTGAGTGAGAGAAAGAATCGACTTC
TAAACAAGATACACGTAGTGCTCCAATTGTAGATGTTTCCATTGTTTCGT
GGTGCTTTGACTCGTTATTTGGTTTAATCAAATCTTCTATTCTGGTTGAt
tcaatgttttattttatttttcattttcttctgaGAAATGGATGCAAAAT
TTAGTGTCTAC
Run BLAST on NCBI

transcript from alignment at scaffold_336:203185..204548+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00060161 ID=TCONS_00060161|Name=TCONS_00060161|organism=Clytia hemisphaerica|type=transcript|length=1364bp|location=Sequence derived from alignment at scaffold_336:203185..204548+ (Clytia hemisphaerica)
CCGGTTTCCAGAATTTTATTTCTTCTCAAACAATGAAAGCCCTCGCTGGC
CCTCGCCCTCAGCTGTTTGCGTGAATAgacaaaattgaattgaaaaaagc
ttttgacgAAAGTGCATCTGACCAATGGCTTTATAAATTTAAAAtcgaca
aaaaatattttataaattttcagaaTGAATTATATTGAAATCTAATATTG
AAATAATGAAATTGAAGTTAATTAGAAATATATTAAAATTCAATATCAAT
TagatttatcaaaacaaaatgttcaATCTACAAGAGGGAGCAATTCAATA
TAATCCCATATTAAACCAGATTTCCACCATGGATTCTCTCTATCAGCAAA
CCAAACAAGTACTTCATTTTCATTATCATCCAGGGAAATCAATTCATTCA
CTACAAAATCAAACCAACCAGACTCTTTATCATGATTCTTAAATGAACAG
CCAgcagaaaaattttctaaaggtGTCCCTTCATTAATATATGCTCGAAT
TTTTTCCCAATCGTTGGTATGAAAATTAAATGCATTTTCAAAATTGGCAT
CATTTTTATTGCTCCTCCAACAAGACTTGATATGAACCATTTCCCCACCA
TCTCCTGAAGGCCAGTAAAAATCTTCTCCAAATTTCATNTTCAAGATACA
AATTAgattcatcaaaacaaaatgttcaATCTACAAGAGGACGCAATTCA
ATATAATCCCATACTAAACCAGATTTCCACCATGGATTCTCTCTATCAGC
AAACCAAACAAGTActtcattttcattattatCCAGGGAAATCAATTCAT
TCACTACAAAATCAAACCAACCAGACTCTTTATCGTGATTCTTAAATGAA
CAGCCATCAGGAAAATCTTCTAAAGGTGTCCCTTCATTGATATATGCTCG
AATTTTTTCCCAATCCTTGGTATGAAAATTAAatgcattttcaaaatttg
catCATTTTTATTGCTCCTCCAACAAGACTTAATACGAACCATTTCCCCA
GCACCTCCTGAAGGCCAGTAAAAATCTTCTCCAAACTTCATTCTCATAAC
AAACTGATATTCGCCACGCTTAACCAGTTTAAAAGTGTGTTTCATCTCAA
GCCAACAAACATTTTTAAGCCTCAAAACATCATGTTGGGTATGTTCATCA
AACTCTCTTGAAAAGTATTCAGGATTTGTTGAGTGAGAGAAAGAATCGAC
TTCTAAACAAGATACACGTAGTGCTCCAATTGTAGATGTTTCCATTGTTT
CGTGGTGCTTTGACTCGTTATTTGGTTTAATCAAATCTTCTATTCTGGTT
GAttcaatgttttattttatttttcattttcttctgaGAAATGGATGCAA
AATTTAGTGTCTAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_037852XLOC_037852Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00060161-exon-scaffold_336-1491911889:203185..203794TCONS_00060161-exon-scaffold_336-1491911889:203185..203794Clytia hemisphaericaexon
TCONS_00060161-exon-scaffold_336-1510915933:203185..203794TCONS_00060161-exon-scaffold_336-1510915933:203185..203794Clytia hemisphaericaexon
TCONS_00060161-exon-scaffold_336-1575043694:203185..203794TCONS_00060161-exon-scaffold_336-1575043694:203185..203794Clytia hemisphaericaexon
TCONS_00060161-exon-scaffold_336-1491911889:204198..204548TCONS_00060161-exon-scaffold_336-1491911889:204198..204548Clytia hemisphaericaexon
TCONS_00060161-exon-scaffold_336-1510915933:204198..204548TCONS_00060161-exon-scaffold_336-1510915933:204198..204548Clytia hemisphaericaexon
TCONS_00060161-exon-scaffold_336-1575043694:204198..204548TCONS_00060161-exon-scaffold_336-1575043694:204198..204548Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_336supercontigscaffold_336:203185..204548 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
3.51746	3.69528	3.77517	3.15282	1.25122	0.739759	0.394476	0.721687	0.451198	0.387089	1.11727	0.642168	0.575491	0.235033	1.64161	1.4543	2.19007	0.642774	0.788439	0.724643	0.557201	1.34107	4.40444	5.73676	0.613885	1.08017	3.3076	3.07896	3.0362	4.50378
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR025886PP2-like
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00060161 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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