TCONS_00063588 (transcript) - C. hemisphaerica

Overview
NameTCONS_00063588
Unique NameTCONS_00063588
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1333

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00063588 ID=TCONS_00063588|Name=TCONS_00063588|organism=Clytia hemisphaerica|type=transcript|length=1333bp
AGTAACCGACTTCATCGCCAAAAACGAGAAGATGTTGGATGATGATAATC
TCTCGAACGGTAGCGACAACACAGATACACACCACGTCAAATCTGGAAGC
TTCTTATCCACGTTCCGGTCTGCAATTTATCGATCGTCACAACGTAGCGA
GCAAGACAATATCTCGATATCTAGTAGCTCTAGTAGTCTCCCTTCAACAC
TAAATGGTAGTCACTCACTTTCGTTGAACGATTTGAATAACTTTGATAGT
GAAGAACACCGAAGAAAAGATATGTCTATGTCAACAAGTCCACGTCCAGG
GCGAAAGACTAAAAAAGACAAAGACAAACATAGCAAGAAAGATCGCGCAA
AAAGTGCAATCTTATCAATCCTTCCGCCCGTCTCTCATCCAATCAGCGAG
CAGGATTTTAACGACTTAGCATCACCAACTCTCCTTCAAATCTCCACAAA
ACAATCACCAACTTCTTCCAATTCAAATCTCAACGAGCAACCAACGTCAC
GACCGCGCACGCGCAGTAAATTTTATACTAACCAATTATTTGACGAATTC
GAAGAGCCAGTGACGTTGACATCGACCAATCAGATTTCACCACGTTGTCA
CACCATGAGTGGTGGAGAAACAAGAAAAGAAAATGGTAGTGATCCATCCA
TACAGCAGCCGAAAATCAGTATCACGGCAACCACGGTGACTAGTTCAGAC
GAGGAAAATAATAACGCGAACGACCCTTCACCTTCATCTAGTTCTTCTAC
AGATACAGCCAAAGAGGAAATTGAGAAATTACGAGCGGAAATACATAAAC
TGAAAATCGACAAAATGGATCTCATACGGCAGAACgtgATCCATCAACGG
GAGATTAAGAAATTAAACGATAAAACGCAGACCAACGGTGATTATCGTTC
TCTATCACTCAAACATTCGTATGACCCGAGAAAAATGTACAACGCAACTG
CTACTACGTTTGCCGAGTTTGTTTGACCACGACTGATGTTGAACACGCTA
GAATGAAAATgatatatttttgtgaaatgacAGATATAGTCATCAGTGAT
GTTAGATTTCTGCATTTTTATCTTTGTTAAACTAGTCCCGATAGCGATAG
GCCAACcgtctttttcaaaaaatgtcataacatttgaaaaaaaaatttca
gaaatacGCCATTTTGCTGCAACTCTTGGGTTTGATGATAAATTTTGTTG
AGTTATATATCTACCAAATTAATTAGGCTTTTACCTTTCTTTTGTAAATA
TCTTTataattttgctgacatcaacATTTATATTTTCTATTTAGTTTGTG
TATTTATTTGATATAAAAATGATAATATGCTTG
Run BLAST on NCBI

transcript from alignment at scaffold_394:50717..55730+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00063588 ID=TCONS_00063588|Name=TCONS_00063588|organism=Clytia hemisphaerica|type=transcript|length=5014bp|location=Sequence derived from alignment at scaffold_394:50717..55730+ (Clytia hemisphaerica)
AGTAACCGACTTCATCGCCAAAAACGAGAAGATGTTGGATGATGATAATC
TCTCGAACGGTAGCGACAACACAGATACACACCACGTCAAATCTGGAAGC
TTCTTATCCACGTTCCGGTCTGCAATTTATCGATCGTCACAACGTAGCGA
GCAAGACAATATCTCGATATCTAGTAGCTCTAGTAGTCTCCCTTCAACAC
TAAATGGTAGTCACTCACTTTCGTTGAACGATTTGAATAACTTTGATAGT
GAAGAACACCGAAGAAAAGATATGTCTATGTCAACAAGTCCACGTCCAGG
GGTGAGcttttctcttattttcttCATCAACCGATATTAATGGCATGGAA
CACACCCCTTAAATCTTTATCAAAACATTACTTGGTGTGTGATCATTTAA
TGAGATGTTTTGCCAAATAATACCTTACAGAACGTAAATTTGGCTACAAT
TCCAGCTCGACTGGTTGACTCTGTAGATTTGACAGGCCCCAcgccatgaa
attgaaagtggggggAGGGGGCAATGAATATAAAGTCTAAAGAGGCGcaa
ccaaaaatttttactttgtaaaaaaggggggggggcatggccccCTCTGG
TCCCCCCGGTGGCGTGGGcccttgaatttcaaatttgtttcCCATTTAAC
AAATTCAATTTGAatcttaaatttcttattgGTTTTCAAACtctaataat
attttttacctATTTTCTCTTTCCAGCGAAAGACTAAAAAAGACAAAGAC
AAACATAGCAAGAAAGATCNGGATGTTAATAATTTGAAATGTATTTGTTA
AAGCACGTCTTAGTTCACTGTATTATCActtctgatagcgctcacgaaAG
AGAATCTTTCGAAAAAATGCGAAAAAAGCGGCTCTGGTGATTGAATAAAG
ATCTGATTCCTAAACTTGCTTTTCAACCTGTTCATTTCAACAGGAGCGTA
CAAGGAGTATGCTTTTACAAGGAATAGTAACCGACTTCATCGCCAAAAAC
GAGAAGATGTTGGATGATGATAATCTCTCGAACGGTAGCGACAACACAGA
TACACACCACGTCAAATCTGGAAGCTTCTTATCCACGTTCCGGTCTGCAA
TTTATCGATCGTCACAACGTAGCGAGCAAGACAATATCTCGATATCTAGT
AGCTCTAGTAGTCTCCCTTCAACACTAAATGGTAGTCACTCACTTTCGTT
GAACGATTTGAATAACTTTGATAGTGAAGAACACCGAAGAAAAGATATGT
CTATGTCAACAAGTCCACGTCCAGGGGTGAGcttttctcttattttcttC
ATCAACCGATATTAATGGCATGGAACACACCCCTTAAATCTTTATCAAAA
CATTACTTGGTGTGTGATCATTTAATGAGATGTTTTGCCAAATAATACCT
TACAGAACGTAAATTTGGCTACAATTCCAGCTCGACTGGTTGACTCTGTA
GATTTGACAGGCCCCAcgccatgaaattgaaagtggggggAGGGGGCAAT
GAATATAAAGTCTAAAGAGGCGcaaccaaaaatttttactttgtaaaaaa
ggggggggggcatggccccCTCTGGTCCCCCCGGTGGCGTGGGcccttga
atttcaaatttgtttcCCATTTAACAAATTCAATTTGAatcttaaatttc
ttattgGTTTTCAAACtctaataatattttttacctATTTTCTCTTTCCA
GCGAAAGACTAAAAAAGACAAAGACAAACATAGCAAGAAAGATCGCGCAA
AAAGGTAGGATGAAACCAATAGCTTATAATTCATgataatttattcaaaa
aaatagtTTAGGCTAATTTTTCCATAATATATGAATGTTGATTCTTCTAT
TCATGATTCAATCCATCAATCGATGAATGCAACGAGTTCGATTTGCTTCA
TTCAATTCGCGCATtggattgaatatttttttgacaaatatcAAGAATCA
GAAAAAGGGTGCATTGATAAGTCTTGTGCGAACAGAAGAAATTTAGTTTG
TAAAGTATTTCTTGAAACATGAAATATCTTTGACTGTTAGTTGCTTCAAG
GTTACTTTCAATGAGTTTTCTGCACTTTGAAACCAAGACGCGCTCAAATg
tagaaaacattattttcttttttttttgaaaagtgcacTAGTCACTACTC
TTGAAGTTATAGGGTTAAAGAACaaagattttatctttttaattttcaat
attttttatttttttcactaaatTCCAGTGCAATCTTATCAATCCTTCCG
CCCGTCTCTCATCCAATCAGCGAGCAGGATTTTAACGACTTAGCATCACC
AACTCTCCTTCAAATCTCCACAAAACAATCACCAACTTCTTCCAATTCAA
ATCTCAACGAGCAACCAACGTCACGACCGCGCACGCGCAGTAAATTTTAT
ACTAACCAATTATTTGACGAATTCGAAGAGCCAGTGACGTTGACATCGAC
CAATCAGATTTCACCACGTTGTCACACCATGAGTGGTGGAGAAACAAGAA
AAGTAAGCTTTCTTTCAAATTAACGTGTTTTGTCATTTAAATTTTGCtta
ttaaatttatttatttcgaAAGGTAAAATTGTCCAGCCgataatttgaaa
agaaaatcctcAGATTTAGTGGgaacacaggaacgcgggaatagtgctta
taaagagctcttatgaaaaatagaaattgccatGGGAAGAGTGGTTTGGA
ATGACattgtattcagtgaacatatagacATAGATCCTAttgcaagttta
atctgcagcgaaatacaacgacgtggtttaatAGTCTATAGATTTAGAAG
AAGATATTCTGAAAATTATTCTTAGAAATTCAGGTCTAGAAAAATCGACA
ACTACTGAAAAATGATCCTTGACATGAATGAAGTTATGGATCAATATAGG
CCTGCTAATGGTCAGATTTTTTGTAGTTGGAATTGGTAAAAATTATTATC
CTTTCTCGTTCACTTTTTCCATCAGGAAAATGGTAGTGATCCATCCATAC
AGCAGCCGAAAATCAGTATCACGGCAACCACGGTGACTAGTTCAGACGAG
GAAAATAATAACGCGAACGACCCTTCACCTTCATCTAGTTCTTCTACAGG
TTAGTAATAAACATTTTTCTTAAACCTTATCCTAAGATACTTTAATTTGG
GAGGGGGTATTTagaggtacaatttccaacGCCCTGgcaattagcccccc
cccccagtgtaCTTAAGTTTGAACATTTTAAAACCcttctaaaagttttt
ttctactGGTAGAAAGTGAGCAAAACCATGAAACTAAGGTTCGGAGAACA
AATTCCCACCTACTTAAAAAGTGTACCGGAGCACTGATTCAGCGTTTGTC
TCGGGTTTTTCTATAGCTAtcactaaaaatttctcttggGTCAAACATCT
AAATTTATTTTAAGTTGAAGGAAATGGTATATAATTACTGTTTCACGGTG
AAACAgctatttaaaatatttaaataaaaacaaagtttccTATACTTCTG
ACGTCTTACTTGCGTTTATTGTGTCTGTGTTGCCAATAGTAAAACACACA
TTTAGACACCCTTTCTAATTATCATCGTATTTTTTTTATAGATACAGCCA
AAGAGGAAATTGAGAAATTACGAGCGGAAATACATAAACTGAAAATCGAC
AAAATGGATCTCATACGGCAGAACgtggtgattttttttttataaacgtC
AGCATTTTTCAATTTGGTTCAGTTGCTTTCCTTATTTTAAACCCATTAAG
TACCATCACTCCgtaacttcaaatttttgatttaaaatgcgTGTACACGC
CCCAATCAAGGAAAAATCCCCATCTCGACTTTTTTTATACGGGcgaagta
aaaaaaacaacaggCACACTGCGCTCTTAACTCTAGACCGACCGGTACAG
gtccgagaaaaaaaattgagcgATCTCATATTATACCAGTTGCACTTAAT
GGGTTAATGGAGTATACAGgaaataatgttttgatttaaatacGCATGAT
GTTTGAACACTGAAATAACTGATTGTAGTTCACTTAAAAAATGTCGACTT
TTACAACGAGCAGAGAACGTGAACTAAAACAGACAATGTACAGAAATTTT
CCTTACAAAACCAATGTTAACTTGACTTGACCACTGACGCCGACGCTGAC
CagtttacagaaaaaaaaacttataaaacacatcaaaagacaCAATCTGA
CGAACATACTTTTGCAAAACACAAAACGAATTATTCCTAAAAgtgaaaag
ttcaaaattttgattttattagaAATTGAAAGAACAAAAAAAGTCACGTC
AGCCGAAACAAGCGTGGTCAGGTAAGATAACCTTGGTCTTTTATATAATA
CAACCTCCGGTGCCGGAGGTTTTGTGGAGAAAGTGCCTAAGAAATTTTGC
ATGACTTAAAAAATTggcctaaaaattgaaattctaaaaacaaCTAACAT
GCGTCAATCACTGCCTGCTCAATATAACAGATTACATAAATGTTTTACGA
atctatttttctatttcagATCCATCAACGGGAGATTAAGAAATTAAACG
ATAAAACGCAGACCAACGGTGATTATCGTTCTCTATCACTCAAACATTCG
TATGACCCGAGAAAAATGTACAACGCAACTGCTACTACGTTTGCCGAGTT
TGTTTGACCACGACTGATGTTGAACACGCTAGAATGAAAATgatatattt
ttgtgaaatgacAGATATAGTCATCAGTGATGTTAGATTTCTGCATTTTT
ATCTTTGTTAAACTAGTCCCGATAGCGATAGGCCAACcgtctttttcaaa
aaatgtcataacatttgaaaaaaaaatttcagaaatacGCCATTTTGCTG
CAACTCTTGGGTTTGATGATAAATTTTGTTGAGTTATATATCTACCAAAT
TAATTAGGCTTTTACCTTTCTTTTGTAAATATCTTTataattttgctgac
atcaacATTTATATTTTCTATTTAGTTTGTGTATTTATTTGATATAAAAA
TGATAATATGCTTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_039855XLOC_039855Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00063588-exon-scaffold_394-1491911889:50717..51017TCONS_00063588-exon-scaffold_394-1491911889:50717..51017Clytia hemisphaericaexon
TCONS_00063588-exon-scaffold_394-1510915933:50717..51017TCONS_00063588-exon-scaffold_394-1510915933:50717..51017Clytia hemisphaericaexon
TCONS_00063588-exon-scaffold_394-1575043694:50717..51017TCONS_00063588-exon-scaffold_394-1575043694:50717..51017Clytia hemisphaericaexon
TCONS_00063588-exon-scaffold_394-1491911889:51443..51470TCONS_00063588-exon-scaffold_394-1491911889:51443..51470Clytia hemisphaericaexon
TCONS_00063588-exon-scaffold_394-1510915933:51443..51470TCONS_00063588-exon-scaffold_394-1510915933:51443..51470Clytia hemisphaericaexon
TCONS_00063588-exon-scaffold_394-1575043694:51443..51470TCONS_00063588-exon-scaffold_394-1575043694:51443..51470Clytia hemisphaericaexon
TCONS_00063588-exon-scaffold_394-1491911889:52446..52470TCONS_00063588-exon-scaffold_394-1491911889:52446..52470Clytia hemisphaericaexon
TCONS_00063588-exon-scaffold_394-1510915933:52446..52470TCONS_00063588-exon-scaffold_394-1510915933:52446..52470Clytia hemisphaericaexon
TCONS_00063588-exon-scaffold_394-1575043694:52446..52470TCONS_00063588-exon-scaffold_394-1575043694:52446..52470Clytia hemisphaericaexon
TCONS_00063588-exon-scaffold_394-1491911889:52945..53218TCONS_00063588-exon-scaffold_394-1491911889:52945..53218Clytia hemisphaericaexon
TCONS_00063588-exon-scaffold_394-1510915933:52945..53218TCONS_00063588-exon-scaffold_394-1510915933:52945..53218Clytia hemisphaericaexon
TCONS_00063588-exon-scaffold_394-1575043694:52945..53218TCONS_00063588-exon-scaffold_394-1575043694:52945..53218Clytia hemisphaericaexon
TCONS_00063588-exon-scaffold_394-1491911889:53692..53815TCONS_00063588-exon-scaffold_394-1491911889:53692..53815Clytia hemisphaericaexon
TCONS_00063588-exon-scaffold_394-1510915933:53692..53815TCONS_00063588-exon-scaffold_394-1510915933:53692..53815Clytia hemisphaericaexon
TCONS_00063588-exon-scaffold_394-1575043694:53692..53815TCONS_00063588-exon-scaffold_394-1575043694:53692..53815Clytia hemisphaericaexon
TCONS_00063588-exon-scaffold_394-1491911889:54308..54393TCONS_00063588-exon-scaffold_394-1491911889:54308..54393Clytia hemisphaericaexon
TCONS_00063588-exon-scaffold_394-1510915933:54308..54393TCONS_00063588-exon-scaffold_394-1510915933:54308..54393Clytia hemisphaericaexon
TCONS_00063588-exon-scaffold_394-1575043694:54308..54393TCONS_00063588-exon-scaffold_394-1575043694:54308..54393Clytia hemisphaericaexon
TCONS_00063588-exon-scaffold_394-1491911889:55236..55730TCONS_00063588-exon-scaffold_394-1491911889:55236..55730Clytia hemisphaericaexon
TCONS_00063588-exon-scaffold_394-1510915933:55236..55730TCONS_00063588-exon-scaffold_394-1510915933:55236..55730Clytia hemisphaericaexon
TCONS_00063588-exon-scaffold_394-1575043694:55236..55730TCONS_00063588-exon-scaffold_394-1575043694:55236..55730Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_394supercontigscaffold_394:50717..55730 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0.390529	0	0	0.841438	2.08334	2.91071	0	0	1.36974	3.33933	3.72735	0	0	0	0	1.99288	3.30244	1.95051	2.32215	0.654223	3.20143	4.19552	2.59803	3.23408	1.31273	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00063588 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top