TCONS_00060851 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00060851
Unique Name	TCONS_00060851
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	1411

Sequence

The following sequences are available for this feature:

transcript sequence
transcript from alignment at scaffold_349:427520..436185-

transcript sequence

>TCONS_00060851 ID=TCONS_00060851|Name=TCONS_00060851|organism=Clytia hemisphaerica|type=transcript|length=1411bp
TTGTGTCTGCCATGTTGAGTGGTCTCACCGTATGGTGTTTAGACAAGAAG
AAAAACTCAGATGAATTTCCACCCACTTTTTTCTCTGGCGCCTGGGAAGG
AGTTTGGTGGGCTTTTGTTACCATGACTACAGTAGGTTACGGCGACCGCT
CACCCAAATCACCGTACGCGCGGGCGTTTTGTATCATGTGGATCTTATTG
GGTATTGTGTTGATATCACTGTTTACTGGATTGATAACAGCTGCCCTCTC
TGTTAGTACAACGCCCGTGTTCAATATCGCCGGTGCTAAGATAGGAGCAG
TACGAGGATCAGCGGAATTTCAGTTAGCAGTTGGCTTGAACGCAGAAGCT
AAAGCCTATATGAATCATTTCCAACTATTCACCAATCTAACCGAAGACCG
TCATCTGCACGGAGCATTGATGGACAATTTCATTCTCACCACAAATACTG
ACTTCCTGGACAAAACGAAGCTGAGAATAGATCGTGAATTTGAACACCCG
GTCACGTATGGTGTTGTTATGAAGAGAGAAGGATCGACAAATACGGAGAA
ATGTTtcagaaaatatttgagaagACATCCTGATAAATTGTTTGAAATCA
TCGCTAAGGAACTAAAGCCGATCAAGAACCCTACAGACGATACACGCTTA
GAGGTGCAAGCAGCTGAGGAGTTGGATTTCTACCAAGAAGTAGTCTTTAA
GCGGGTTGTGTACACAGAAATTGGGTTACTGGTTTGTGCGTTGTTGGCTG
GTGTTGTATGGGAATTCTTTGTCAGGAACAAAGATTCAGCTGCATATCGA
CTGATTGGGCGTATCCGTGGTAAACCAAAATTCGCCAAAGCTCCGGAATT
CGATTTAGACGGGGGTAACAAATTGATGAATAACGGTCGTCACGGTTCAC
TGGATGCAGAAGAAGTCGCTTATGGGAATAATAACAGAGGACTCGATAAC
CTAATTGAAGAATATAATGATTACCATACAAAATGGATTGAGCGAGTCAa
acaaatttcaaccaatgggATTTCCCAATAACGATTAAAATAGACAAATC
CATGTTCGTAGTTCATTTGTACATTGTTATATCAGAGGAAAACGTGTTTT
GTGATTGTGAAGATTGTGACTGGAAGAGCAAATATTCCATGACTATTAGG
TGCTCGGGTAGCCAGAATGAAATGGATGGCCTTGCtgcaaaaaaagttga
atatgatCAAATTTGATACCATCCATCCATGTACCTGGTTTTGTCTCTGC
CAAGGTGTAGTAAAAGGTCTGCAATAatcgatttttgagatttttNTTTT
TACTTGACACCACCCTAGCAGTCACTTAGTACCATcaagtactaactgat
ttttgaaaattttgtaggtataccaccacggtactaactggcatgatgtc
ttgtactaact

Run BLAST on NCBI

transcript from alignment at scaffold_349:427520..436185-

Legend: exon

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00060851 ID=TCONS_00060851|Name=TCONS_00060851|organism=Clytia hemisphaerica|type=transcript|length=8666bp|location=Sequence derived from alignment at scaffold_349:427520..436185- (Clytia hemisphaerica)
TTGTGTCTGCCATGTTGAGTGGTCTCACCGTATGGTGTTTAGTAAGTGAT
GTTGATTTTCATTATTGTGTCTGCCATGTTGAGTGGTCTCATCGTATGGT
GTTTAGTAAGTTATATTGATTTTCATTGATGTGTTTGCCATGTTGAGTGG
TCTCAACCTACGGTGTTTAGTAAGTAATGCTTTTTCATTTTTTGTGTTTG
CCATGTTGAGTGGTCTCAACCTATGGTGTTTAGTAAGTGATGCTTTTTCA
TTTTTGTGTCTGCCATGTTGAGTGGTTTCAACCTATGGTGTTTAGTAAGT
GATGTTTTTTCATTTTTGTGTCTGCCATGTTGAGTGGTCTCAAACTATGG
TGTTTAGTAAGTGATGCTTTTTCATTTTTGTGTCTGCCATGTTGAGTGGT
TTCACCGTATAGGGTTTAGCAAGTAATGCTTTTTCACTTTCATAGTGTCC
TTCAGGGTCTCTTCCCCCCCATGCCTAGAATGAAAATTTTCCATTCCCCC
CCTCATTTTTCCCCACCCTGCCTCCAAAAATTTCTCTGNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTATGCT
ATATCATCTCATAAAACCAGATGTTTTTCAATTTTGAATTGATTTTGGTG
AGTTCCCCCCCATGCCTAGAATGAAAATTTTCCATCCCCCCCTCGTTCCC
CCCCCCTGGCTTCAAAAAAAATTCTTTCCCCCCTATACGTCCTTTTGACC
TCAAAATCCATTCCCCCCTGAATCCAGGGGGGGAGGACACTATGACTTTT
GTGTCTGCCATTAAGTGGTCTCACAGTGTTAGCAATTAAAAGACATTGTT
CTCTATATATTTTGGAAACTTAATATCGAGATTGAAGGACTAAACCGGAA
AAGCTAAGAAAACCAAACCTCAAGAATTTATCCTAAAGGATTAAAGTTCC
AAAAATATTGACAGTCCCCAAATTTTGATACATTGGTGTTGAAGGAGAAA
ATATATAACTAAAAGTAATACCTCATTTGAAAAAGATAATAGTAAAAAGT
TGTCGGCGAAAGTTGTACCATCTTTTTTTCTACACGTTTTTTTTTATAAG
AACATTCAAAATTTTTGAAGCCTTTGGATGTTCTGAACCTTTTGAGATTT
AAACCTAAATAAAAATGTTCTTAGTATGTTGTCATTTTCACCATTTTATG
ACCATTTTTACCCATTTTCCTATAAGAAAAAGGGTGTTTTTGAGTCTACA
AAGCATTAAAATGTTCTTAAAATGTTCTTAACATTTTAGCCATCGAAGCC
TTATGTTCTGATATAGTATGTTCTTATAAAAAGCCCCCAGTAACTTTGCT
GTATAAAATCAAATAAAAGCTACATGCATTTTTACGAGAGACCAACGTGT
ACCCTTCCCACTGGAAAAATTGTCCAAAATATCGTCCCCAATTGAAGCCT
TATCTTTTTATATAGTTTGTTCTTATAAAAAAAGTGTATGTATGTAAGAG
TAAGAAAATGGGTATAGGAGATACATTAAATGATTCTGCAAGTTAACCTT
CATTATTTCTTTTGTTTCTTAGGACAAGAAGAAAAACTCAGATGAATTTC
CACCCACTTTTTTCTCTGGCGCCTGGGAAGGAGTTTGGTGGGCTTTTGTT
ACCATGACTACAGTAGGGTAAGTGTGAAAACAGCTAATAGTTGAATTTAT
TACGTAACAGCGATTTTATAAGGACATGATGCTGAAAATTGTCAAGACAT
AAGAGAACAATTAAAAGAAAAAGCAGCCTGAGAGGTTTGGGGACACGAGA
AGTTTTTTTCGCGTTGGTGCAATGCAACATGCTCCTTCCCGCCCAACACA
ACAAAAGTGTGTCTCATGGTTTCTTTTTTTGTTTCATGGGATGGGACAAA
AAGTAGGGGAAATACCCAAAAGACACGCTGATTTTGACAACAGTGAGAGA
AGCTAAGCCCAAATGTTATTAAAAGAAAAATGGGGTGGAGACACGAGAAG
TTTTTTTTCGCGTTGGTGCAATGCAACATGCTCCTTCTCAACACAACAAA
AGTGTGTCTCATGGTTTCTTTTTTTTTGTTTCATGGGATGGGACAAAAAG
TGGGGGAAATACCCAAGGTTGGTGGGATGGAGCATGTTGCATTGCACCAA
CGCAAAAAAAACTTCTCGTGTCCCCAATGCCTTTATTTAAAATGAATATT
TATTTAAATCCAAATTCTAATGAGAAAGGAAGAGCCAGGGACTAAGAATA
AAAATATCATCAACTCAGCCTTAATAAATTCATTTTCAACATTTCATAGT
TACGGCGACCGCTCACCCAAATCACCGTACGCGCGGGCGTTTTGTATCAT
GTGGATCTTATTGGGTATTGTGTTGATATCACTGTTTACTGGATTGATAA
CAGCTGCCCTCTCTGTTAGTACAACGCCCGTGTTCAATATCGCCGGTGCT
AAGGTAAAGGTTTATATATGCCAAACTTTTGACTCTGCAGGTTTTTTGTA
AACTCTCGTGTCAATTACCATTTGTCTACTTTGCAAAATGCCCAATGCAA
TAACATGCGAATACACCTTTTCGACCGTAGTCGCGCGGGCATTTCTTGTC
CGCTTTATCCCACTAAAACCGTCCCAATCCTTTTAGTGCGAACACCTATA
GACAATAGAAAAATGCGTCAAAAAATGATTGGGACGGTTTTAGTCACAGA
TCTGTAAAGCCCGAAGGGCTAGATTTGCGGCCTTTATCGAAAAGTGAAGC
AAGTTTTGGTAGGATTTCCTACCAAAGAAATCACGCGACAACAAGCAATT
TCACTGGTTTGAGAGATGCGAAATAGCGCTTTCCGCCTAATTTTTTTGAT
CTAGCGCTCTGAAAACAATTAAAATGCTAGATCCTATCCATCGGCACGAA
ATTTAAAAAGTCAAATTTTTGCTTCACTTTTTTTGCTGGAGAAAGCTAAA
AGTTGCCTATCTAGCCCTTCGGGCGTTACAGATATCTGTGGTTTTAGTGG
GATAAAGCGGACAAGAGCGAGACTACGGTTGAAAAGGTGTATTTAAAATT
ACCAAACTCAATCTTTCGAAATTTTGAAAAGTAATAATATTGGTGCTTTG
AATAAAAATATCATGCACCACCCTCCCATCACTTTCATAACAAACAGCTC
CAAAAGGACAAAAATTTATAGGGATCACAGTAGTTTAATATTGCAAGAAC
CACGCTAGGAAATGGAAAGTGGGAGGGGGCAATGAATGTAGAGTCTAAGG
AGGCCCAACTAAATATTTTTACTTTTCAAAAAAGTGGCATGGGCCTTGTA
TTGTAAATGTTACCCGAACCCTTAATGTACTAAAGAATAGCTTAGTCTCA
ATAGCTTGAGATTTTGCATCGGGCAATCAAACATTGCCACCCCGGGGAGG
GAGGGTATTAAGGTTGGGAGTTGACGGGTATGTGCCGCCCGACTTTTGAT
CCTCGGACCCTTAGCGGGATGAAAAAGGAGAAAAAATAGAATAATTGTGC
GATTTTTACGACCCTTTTTGGGACTGAAATTTAATTTTCTGTTTTTCCAA
ACCTTAAAGGGTCTTTCAAGACCCAAAAAGGCACCCTTAAGGGCGGCACA
TACCCGTACCCTTCTCTCGCCTAAGTACATTGAATATTATATTATGTTCT
TTATCTTTATAGATAGGAGCAGTACGAGGATCAGCGGAATTTCAGTTAGC
AGTTGGCTTGAACGCAGAAGCTAAAGGTTTGTTCTAAATCTGTTGATTAA
AGGTTTTATATTTACATAAGTGTTCCCGTTTCATATCAGGCACATATTTC
ATATCAGAACAGTGTCTTGCTATTGTTATATTATGCTAATATAAGCAAGA
AATGTTTTTATTTTCCTCTTTTTTGGCCGATCTCGCTCCACACCATGGTC
AATCCAATGTGAAAAAGGTTGTGAATTAAAATTGATGAGTAAGCAAACGA
TATCACTCTTATTTAAAAACAAAACCTTTAGCTTTCGTTTTCGTCAAGAA
GGAGCATATAAAGTAGGCTGGTTAACCAAGCCAGATTTTACAAGGCCAAA
CTACGGCTGACGGCAGTATAGCGTTATCGGCGCTCTAATGATTTTTATGA
TGTATGGAGTTTTAAGTTTGCCTTGAAAAACTGATATTCAGTCACAGCTT
ATTATCAGATTTTACCAAGCGACTGAATCAATCTGGCTTAGATTTCTAGG
CTACATAAAAAGCAAAAAGTTGACCTAAACATGAAACATTTCCAAACCTC
AATGACAAAGCTCACAGCTCAACAGGTTAATGTATTCGATTTACTTGACG
ACCGATCATTTGTCAATTCAGGGGGGGATACATAGTTACAAAACTTGTTT
GACTTGCCAGACAGTGGTCCTTACAACTCAGTTTAGACCCCCTGGTGAAA
TGAGTCAGAAAGTTGGTCATCTAAAGTAAACTAAACCAAATTATATTAAG
ACTTATAGAGGGGGTTTATCTAAAGAATACTGCATTTGCTAAAAATAGAC
AAAAAGAACGACAAATTTCATAAAGAACGACAAATGTCGCCCTCTACAAC
CCCGACCGAAAGTGACTGTAACACCCCTCTACGGATTCATTCCTTTGTTT
ATCACGGGAATTAACTACACAAGGTTTAAAAAACGACAAATTACGCATGT
GTGTTACATGTGTGTGTTAGGATTCTTTAGAGGAACAGACTGTATATAAT
AAATCTAATAATAAAGAGTTGACACAAACTCAGAGTTTTATGATGCTCAG
GCACCAATCATCAGTGAAAACTCTTTATTATAGTAACGCTCTATTTACTT
ATCGAGCACTCTACGAGGAGAAGATAAACACCCTCTACAACTATAATAAT
TCTAAGAAATAATTTCTTTTCGCCATAGCCTATATGAATCATTTCCAACT
ATTCACCAATCTAACCGAAGACCGTCATCTGCACGGAGCATTGATGGACA
ATTTCATTCTCACCACAAATACTGACTTCCTGGACAAAACGAAGCTGAGA
ATAGATCGTGAATTTGAACACCCGGTCACGTATGGTGTTGTTATGAAGAG
AGAAGGATCGACAAATACGGAGAAATGTTTCAGAAAATATTTGAGAAGAC
ATCCTGATAAATTGTTTGAAATCATCGCTAAGGAACTAAAGCCGATCAAG
GTACGTCGTTGTAGCAACGTCCTTCAGCTCTAGTTTAGACAGTCGATCTT
CTGGCTTACCGTCCCTCGTTTTTGACGAAAGTCGACCGTTTAAGGCTCTA
ACCATAGTGAATTTTAATATTTATCATGTACAAAACATAAATTTCTGCCT
GATGTAGCTAACAAAACTTTGACATGTTATACATTTTCTGTTAGGCCAAC
TATCCTTGAGTCTGAAAATTTATGAATCGCAAAGAAAAAATTTGATGAAG
AAGAAAATGAAGACTTTTGCGACGAACAGTATTTCAACTTTGAAGAGCTT
AGTTTGGTCGAAGAAGAAATATTTTGAAAGTTTTTTTGTGGTAGATGGTG
TATCCTTACCGAACTATAAATATATTTTCGGGAAATTTACTTGTCTCAAA
ATCTTGAAAAAAGTGTTTTTTGACCTATTTTTCATCCCGATTGTTCATAG
AAAAACAGCTATTACTTTTGATGCATCAATTTTTCCGAAAAATTTAAAAC
AGTTCAATACTTTGCGGACAGTTTGAAAAAATTTCGAAACAAAAAGCTTA
ATTACCCATTAAAACTTAGCACTTTTTATAAAAGAGGGTGATGCAACATA
TTATTAACGTCTTTTTAAAGTTCATAACGTGATTTTTGCAATTAAATTCT
TTATTACTTTTATGAGATTTGATTAAAAAGCAATTTATTAAGGCAATTCT
TTGTTAAAAGTGTAAAGGAACCTGAAACATAACTTTTATGCTCAAGTACC
AAAATCAATTTTTTGACTATGATGGTCAGATCCCTTAATGTCAGAAATTA
TCGCGGCCAGAAAAGTCTAGCCATTTGCGGATTTTTTCGTATTTCGCGCG
AATTTTAGCAAGTTCTGCCGGCGGAAGTTTCTGACATTAAAGATTATCTC
TTTAAGGGTTAGGAAAAAAGCATATAAATTCTGTTTTTAAAATACCTCAG
AGGTTAATTCCAAGCGACCGTTCTCCCGGTAACCCAAAACCCTACCCTAC
CCGACCCAACCCCCCAAGACCAAGCCAAGGGGAGGGTAAACCGAAAAAAA
AAACAAGTATAAGACATTGATAATATTCCCACAAAAAAGCAATTAAAGAC
TCCGCTAGTCAAATAACAGCTTTTCCTGAAATAAAATTCGAAAGAATTCG
AAATAACGTTATTTAGTATTTTAACCTCAAATATATAATAACAGTCACAT
AACTTTAAACAATTTTAACACCCTTGAAAAAAATATCAATTAACTCGAAC
ACGCGCGGCGAACACAAACTTGTTCAAGTTATAGAAATTTTGAGTTATGG
ACATTTGAGTTTACAAGGCATTGATAACTGAAGGGAAAAACTTTTTCGAG
TTAAGGACACATTCGAGTTATATAGGACCGAGTTTATGAAGACTTAGACG
ATCCTATCGTCTACACAAAATCACTAAAAAAGGGAATAGTTTAGGAGGCG
TGATAAACTTTGGGCAGAGTAAAAAGTGTTTGTTCCAAGCTCTACCGCCA
CTTTTTTCCCGTAAACCGCTCTGACGCCCCGACAATGCTCTTTTATATTT
TGCCGCGGTTACTGACCCTCTAAAACAGACAATAGCATCGTATAATGAAA
ATAGACCTTATCGGAGTTTTTGATTTTTTCTATAAAAGCGATGCATCGTG
GGATTGTTTTCGGAGTATTACAATAGAAATCTCTTAGGAATTCCTCGAGG
GAATTCTATTGTCCCACAATGCATCATAAGGTCTATTCAATTGTAAGTAA
TCATTATTTTTCTCATTCTNTCTATTGTAATACTCCCGAAACAATCCCAC
AATGCATCATAAGGTCTATTCCAGTGTAAGTAATCATTCTTTTTCTCATT
CTAGAACCCTACAGACGATACACGCTTAGAGGTGCAAGCAGCTGAGGAGT
TGGATTTCTACCAAGAAGTAGTCTTTAAGCGGGTTGTGTACACAGAAATT
GGGTTACTGGTTTGTGCGTTGTTGGCTGGTGTTGTATGGGAATTCTTTGT
CAGGAACAAAGATTCAGGTAAGTGGACGTCAAAACAACGTCTAGTCAACA
CTCACAACATCCATATAACGTTAAATGATTGTAATGATATATCATCGAAC
TATGCGTTTATTTTAATAAAGAACATCAATTTTGTCTCATGAGCCTAAAA
ATGTTTTTATATTCATCATTTTGTGTAGCCGGTCTACATTTTGTGACCAT
TCTTCTGCAACTTTCTATAAGAACTGGTGTTATAGAGTCAATAAAGCCTT
TTTTAATCTGACTAAAAGTTAAAGCGAGACAACTTTTGACCCAATCCCAA
GAGGTTGCAAAGCGAAACAGAACGCATAGTTTTAAATTCAAAATTTAAGG
AGCGATGGCCAAGTGGTCAAAGGCGTCAGCGTCTTAAAAACCAGCGATTC
GCGGTTCGAATCCCCGCTCCTTTTAATGTTCTGTTCAGTTCATAGATAGT
CGAGCCGGCTGGCCGTGGACCCGTGAAAACAATCGAAAGACTGCCTAAAA
GTCCTAGATTACTGGGCTACATATTCACGTAAAATATCGATTCTATCTAT
CTAAAATAAAAGTCAAAATTCAGCAAGTTCTAGAATAAGGGACAAACACG
GCATAATAATAACAAAATCTTTGACATACCGTTTTCAATTTCAGCTGCAT
ATCGACTGATTGGGCGTATCCGTGGTAAACCAAAATTCGCCAAAGCTCCG
GAATTCGATTTAGACGGGGGTAACAAATTGATGAATAACGGTCGTCACGG
TTCACTGGATGCAGAAGAAGTCGCTTATGGGAATAATAACAGAGGACTCG
ATAACCTAATTGAAGAATATAATGATTACCATACAAAATGGATTGAGCGA
GTCAAACAAATTTCAACCAATGGGATTTCCCAATAACGATTAAAATAGAC
AAATCCATGTTCGTAGTTCATTTGTACATTGTTATATCAGAGGAAAACGT
GTTTTGTGATTGTGAAGATTGTGACTGGAAGAGCAAATATTCCATGACTA
TTAGGTGCTCGGGTAGCCAGAATGAAATGGATGGCCTTGCTGCAAAAAAA
GTTGAATATGATCAAATTTGATACCATCCATCCATGTACCTGGTTTTGTC
TCTGCCAAGGTGTAGTAAAAGGTCTGCAATAATCGATTTTTGAGATTTTT
NTTTTTACTTGACACCACCCTAGCAGTCACTTAGTACCATCAAGTACTAA
CTGATTTTTGAAAATTTTGTAGGTATACCACCACGGTACTAACTGGCATG
ATGTCTTGTACTAACT

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_038215	XLOC_038215	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_349	supercontig	scaffold_349:427520..436185 -

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.45444	0.410488	0	0.268655	0.555948	0	0	0	0	0	0	0	0	0.884534	0.62873	0.629997	4.5334e-06	0.211118	0	0	0.00274802	0	1.57421	0.000805942	0	0	0.0341258	0.0204047	0.423933	0.0193247

Blast

The following BLAST results are available for this feature:

BLAST of TCONS_00060851 vs. Swiss-Prot (Human)

BLAST of TCONS_00060851 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0


Match Name	E-value	Identity	Description

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TCONS_00060851 (transcript) - C. hemisphaerica