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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00060928 ID=TCONS_00060928|Name=TCONS_00060928|organism=Clytia hemisphaerica|type=transcript|length=467bp
CTTTAGCGCTGGAGGTGAAGCGAGCGTAGGATTCTGACAAAAACATGACC
AAAAGCAGGTCCAGCCTAGCTAGGTCCAGCCATACAGCCATACACTGATA
CACTTGTGGACAAAATCTGATTGTAATGTGAATTCAATTGAAACttaatt
tgatcaaattttaaagaatgtttATCACAAATGTTCTGCCAGGGAAGCGA
TGCTTAATTGTGGATGAACGCACATCGTCTGCAACCAGAAAAAAGAAGAT
TGAGAAGCAAACCGTTTTTCAACATGGAATTATCCGCAGATCAAATCATT
CTCCATCTAAACAGCAGCGAAAAGATTTAGAGctCTTAATTGAACACACT
GATGGCTCaagcaaaaaatttcaaacatggAAACCGAACAATTGTGttgg
aaaacaattttttattgaatatcTTATCGTTGAAGTTTTGGTCGAAGGAC
AACGTTGCCTCGCTCTT Run BLAST on NCBI protein sequence of TCONS_00060928-protein >TCONS_00060928-protein ID=TCONS_00060928-protein|Name=TCONS_00060928-protein|organism=Clytia hemisphaerica|type=polypeptide|length=100bp
MFITNVLPGKRCLIVDERTSSATRKKKIEKQTVFQHGIIRRSNHSPSKQQ
RKDLELLIEHTDGSSKKFQTWKPNNCVGKQFFIEYLIVEVLVEGQRCLAL Run BLAST on NCBI transcript from alignment at scaffold_35:64004..71386- Legend: exonfive_prime_UTRCDS Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00060928 ID=TCONS_00060928|Name=TCONS_00060928|organism=Clytia hemisphaerica|type=transcript|length=7383bp|location=Sequence derived from alignment at scaffold_35:64004..71386- (Clytia hemisphaerica)
CTTTAGCGCTGGAGGTGAAGCGAGCGTAGGATTCTGACAAAAACATGACC
AAAAGCAGGTCCAGCCTAGCTAGGTCCAGCCATACAGCCATACACTGATA
CACTTGTGGACAAAATCTGATTGTAATGTGAATTCAATTGAAACTTAATT
TGATCAAATTTTAAAGAATGTTTATCACAAATGTTCTGCCAGGGAAGCGA
TGCTTAATTGTGGATGAACGCACATCGTCTGCAACCAGAAAAAAGAAGAT
TGAGAAGCAAACCGTTTTTCAACATGGAATTATCCGCAGATCAAATCATT
CTCCATCTAAACAGCAGCGAAAAGATTTAGAGGTATTTTTTGTCTGATTT
TTTTCTTCAAAAGGTGTCTAAAATACCTACCGTCAACTGCTCTAACTTGG
GACTACCTGACAAAACATGGCATGGGACGGCGGCAATTCGGCCACCATTT
CACCGAACCTCCTAAGTCATTTGATTTGAGTTAAGGAACGGCTTAAAAAT
ACACGATTTCTCTTTCGATTTTACAGTAAGTGAAAATACAGACCAGATAT
GCAACAGTCCCATGTTTGGACCAATCGTCCCACCAAGTTAGAGCAGTTAA
CGGTACTGCTTGTTAGCTCATCTTATTTATTGTTTTGAACCTGAAGCTCT
GAAAGGGATGTGAGAAAAGAATTCAACTGTTTTTGACATAGACAAATCAA
AAAGTAAAATCAGAGAAAACACGTACTATATGATGCAAAAGGAGATTGCT
AAGACAGTTAGTCACACTAGGAAATTAAGCTTTCAGAAAAAAACAACATC
AGTCATCTACAGGATACATTTCAACAACAAGGATGAGAGCAGATGAGAGT
TACCTTAATCAAGTTCGCAAGACAATATTAATTAAAGCTTGAAAGTTGGA
AACAAAATAAAACGTGCAACAGCCAAAATCAACCAACCAAAATTTGTCAT
TCAATTCTCGAGACAGCGCTTCGATTTTTAAGGCCTTGTTTATACGCTAA
AGTAAAAACAATTCCGCACATGTACTGTGAAAAAGGGTAACTTGCATCAT
TGGAGGCTAACATGCATAGCCCTCAAATGAAAGACCCAGCTGGTCATTAA
AATACAAAAATAAATCAAAACAAAAANNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNCTGGGGTGTCCGGGGTAGTCTCTCAAAAACAAATAATACG
GACCCCGGGCACGCATCAAAAAAACCCCGGACTGTCCGGGGCATAGGCAG
GGTCGTTTGTATTTTAATGACCAGCCAGGTCATTCATTTGAGGGCTATGC
ATGTTAGCCTCCACTTATGCGAGTTACCCTTTTTCACGGTAAATGGGTCA
TTGTTTGAGATAGCCTATCCGGCGGTGCGTGGATCTAGGTGGGTTCCGCC
TCCCCCGTAAATCTTTGGCCTAATTTAACTTGAGTCCCGCTCGGGACTGT
CCCGATCTAGAACGTCGTGGTAAAGTCGAAATCGATGAAGAAAAAAATAT
TGATCGATGGTTTGATTTATACTATATACTTTTACTTGAGTCCCGATTTT
GCGTACGAATTGTTTGGATTCGGGACTCAATTAAAATTCCCGATTTCGCC
TACGAAATGGTTGAATTCGGGACTCAAGTAAAAGTATATATAGTAACGAG
AAACTTTTAGTCCCGATTTACCTTACGAACATATTGGATTCGGGACTCAA
GTAAAAGTATATATAGTAACGAGAAACTTTTAGTCCCGATTTACCTTACG
AACATATTGGATTCGGGACTCAAGTAAAAGTATATATGATACATATTTAT
TATCTGAGTCACTGAAAAGATGGATATGGCGGCTTGAATTTGAAAATCAG
GGAAGTTTGGGGCAGATCTTTATTCATACGGGCTAATTATAACACTTTTT
TAAATTATACTTTTCGGGACGGTCCCGAATCGGCCTACGCAAATGTTGCA
TTCGGTTACAGTCCCGAATTGGCCTACAAAAAGGTTAGATTCGGGACTCA
AGTAAAAGTATATATAGTAACGAGTAACTTTTAGTCCCGATTTACCTTAC
GAACATATTGGATTCGGGACTCAAGTAAAAGTATATATAATACATATTTA
CTATCTGAGTCACTGAAAAGATGGATACGGCGGCTTGAATTTGAAAATCA
GGGAAGTGTGGGGCAGATCTTTATTTTATACGGGCTAATTATAACACTTT
TTTAAATTATACTTTTCGGGACGGTCCCGAATCTGTCTATATAAAGGTTT
GATTCGGGACGGTCCCGAATTGGTCTACGAAAAGGTTGAAATCGGGACTC
AAGGAAAAGTATATATAACAACGAGAAACTTTTAGTCCCGATTTACCTTA
GGAACATATTGGATTCGGGACTCAAGTAAAAGTATATATAATACATATTT
ACTATCTGAGTCACTGAAAAGATGGATACGGCGGCTTGAATTTGAAAATC
AGGGAAGTGTGGGGCAAATCTTTATTTATACGGGCTAATTATAGCTTGTT
TTGAAAATGTAAATTTCGGGGCGGTCCTGAATCTGTCTATATAAAGGTTT
GATTCGGGACGGTCCCGAATTGGTCTACGAAAAGGTTGAATTCGGGACTC
AAGTAAAAATATATATAGCAACGAGAAATTTTTAGTCCCGATTTTCCTTA
TTTCAAAATTTCTAAAGTAGGCGAAATACTATATTGGAACAAAAAATCCA
AACAGTGTATTCCGCCTTCTTTAAAAAAATACACTTTCGAATGTTTCTAA
AGAAGGCAGAATACACTACTTTGGACTTTCTGCCCTAACATAGTATTCTA
TGCCTTCTTTAAAAAATACCCCTTCGAATGTTTCTAAAGAAGGCGGAATA
CACTACTATGAATTTGCTGCCCTAACATAGTATTCCGCCTTTTTAAAAAA
AATAGGCTTTCGAATGTTTCTAAAGAAGGCAGAATACACTACTATACTAT
GAACTTATTGCCCTAACATAGAATTCCACTTTCTTTAAAAGAGATATCCC
TTCGAATATTTCTAAAGAAGGCGGAATACACTGCTATACTATGAACTTAT
TGCCCTAACATATTATTCCGCTTTCTTTAAAAAAATACCCCTTCGAATGT
TTCTAAAGAAGGGGGAATACACTACTATGGACTTACTGCCCTAACATAGT
ATTCCGCCTTCTTTAAAAAAATACCGCTTCGAATGTTTCTAAAGAAGGCG
GAATACACTACTATACTATGAACTTATTGCCCTAACATAGTATTCCACCT
TCTTTAAAAAAAAATACCCCTTCGAATGTTTCTAAAGAAGGCGGAATACA
CTACTATACTATGAACTTATTGCCCTAACATAGTATTCCGCCTTCTTTAA
AAAAATACCCCTTCGAATGTTTCTAAAGAAGGCAGAATACACTACTATGG
ACTTACTGCCCTAACATAGTATTCCGCCTTCTTTAAAAAAATACCCCTTC
GAATGTTTCTAAAGAAGGCAGAATACACTACTATGGACTTACTGCCCTAA
CATAGTATTTCGCCTTCTATAAAAAAATACCCTTTTGAATGTTTCTAAAA
AAGTCGGAATACACTACTATGGACTTCTGCCCTAACATAGTATTCCGCCT
TCTTAAAAAAAAAACGTTTTCGAATATTTCTGAAGAAGGCGAAATACACT
ATGTATTTACTCTCCCATATAATACTCTGCCTTCCTTGAAAAATACGTTA
ATCAATGGGGGGGGCGGCTATTAGGTACCCGAGAGTATTACAAACACGGA
CAATCATTTCCAAAAATTTAAATCGGTATAGAACTACGGGCGTGTTACAA
TGACGTTGAAATCAGGTTCCGGCAAATTAGAATGGACTTATTTTAAACGC
ATAATAACGGAGAGAAGAGGAAGAGAATCGATTCCAAAGAAAACCCAAAA
AGGTATAGACATGAATGATTTATGGTTAAGTACAAAATCGACGAAAATCC
TTTGTCTGAAAAGTCGAATCCCACTCGGGACTCAAGTCCAATTAGGCCTT
GGGAAGATTCTTGGGAAGTTGATCTTCAAATTAGTTTTCAAGGTTGGCTT
GGCTCAAATTTTTTCATCTATATACCTTATTGGTATATATTTTCGCGTGT
TACAAATTTTTGCGGGTACTTAATTTCGCGATCTTTTTGGCCAATTTTCG
CGAAATTTAATACTGTTTAAATTTTTCAAAATTACAAAATCGTGAAATTA
AATACACGCAAAAAACTTTTTCTTAGTATTTTGTTAGTATTTTTACATCA
AAAACGTTGTGTTTCAAGCAAAATCAGTCTTTTTCTTGCTTTATATTCCC
ACTTTCTGAAAATACCTAGTTTAGTGAATCGCGAAATTTAATACACGCGA
AAATTTTCCAGAAGTCAGCAATCACGAAATTTAATACATGCGAAACATGT
TTTTTCAAAAAAAATTCGCGATTCGCGAAAATTTGTAACACGCGAAAATA
TATACCAATAAGGTATGGCTCGAATTTTAGGCAATTTCTCAAAGTTTTTG
AAAATGTTAATTTCATTAAAAAGCGCCAGGTTATTTTTTCATTAATCTCT
TTAGAAGTTTTGTGGCGCTTTTTTTGCTTGAGAGTCAAGTAAACTATATA
GCGCGGACCGTCTAAACAAAAGGAACACAAGACATAAACATCAGGCCACT
TGTTTTGGTTAAAATTGTCACGGAATAAATGTCTCAAAAATCGATATTTC
TGGTTAAATTTCTTAGCGTCACAGACTCTAACCCCCCCACCCCTTCGCGT
CAATTTGACGTTAGTCGTGGGAAGAATTGATATGTGAGTGACCCCTTAGA
AGCCAAAACAAGGAAAATGACGTAAAACTTATGCTGAAATAACCAAAGCA
CACAAGGTAAATCTTAAATCTGTTGTTGCAGAACAAAAAGAAGAGGATGA
GAGGAGAAAAAAAGAGATATTGAATCACAAGGAAAAGAAACATCATACTT
TAGGCGTATAAACTTTCGCAAGCAGAAACTTTTGCAAGGTAGAAAAATTG
CAAAATTCATGACATAAACATTCGCAAATGATTGGATAAAAATGAGGCTT
TTTAAACGAAAATTGGCTAAGAAGTGACAAATGTTCCGTTGAATCCAATA
AAAACGGTTGTTCTTTGTATTCAATAGGTGTCAAAGGCTAGAAATATGCT
GAAAATTATATATTTATTAACATTTAAAAGTTTCATAGATTTTCAATTTT
TTAAAGAAAATTTCAAGAGCATAAACTTTCGCGAATTACCCTGTTAAGAA
TTTTCAAAGATATTAACATTTGCGAAAAAGTGAAGAAGAAAAAGAAAGAA
TTATGAGCAACCTAAACAAGTTGAAGTGGCTTGGATATCATCTAAGCATC
ACCAATGATTTCACCATATCAACAAAAGAAGAAAAATCAAAGAGATGCGT
GCGAAAAAGCTAAGAAATGTGATGGTGATTTCATTTGGCATGTGAGAGGA
AGTCACAGAACAGATAATCTTCGCTTGATAAAAGCAAACAAAGACTTTGC
CAAACAAAAGCTGTCAGTATCTAGCCTCAGTAGCAGCAATGGTGAGCTGC
CAACAAAACATTAGCTTTTTTTTAATTGTAAATTAGCGTTAACTTTTATT
AACCTTTTTGTCAATATGAAATAAACTACAGGGTGATTAAAAAAAAACTG
CACCCCTAGATTTTTTGACGTGAATTTATTTTCATTCATCTTATCGCTTC
GAAGTTTCACACGCTTTTTCCTTTGTAAATTTAAAGTCTATACGTGTGAA
ATTTGAATGTTATAGCTTATAGTAGAGGGCATTTTGTAAAATCGCTCGAA
TGTTTTGATCAAAGCACTTGTTATACATTTTTGGAAAGCTAAGGGGTAAG
GGAATCGAAATTACGATGTTTCCTTTCCAATTTTTTTTCGGACACTTTGG
TGTGATTTTCGGACAAATATGACGGCCTCAGGCAAAAATCATAGGGTTAA
AAATTAATGAAAATTTTAGCTCGAGAAAACGGAGACCTGTTGTATATTTT
TGGAAAGCTCTCAAAAAATTAGGATTAGAGATATATTGCAAGTATAGGTG
ATATTGAGCTTCAAAAAGCGCAAAAACTGGACAAAATAGCTGTTTCTGGC
TGAAAAACACGGTTTTCAAGGTTTATGTAATACAAGGTATTTTTCAAAAC
TTGACACCCACCCATCCCTGAATTACACCAAAATACCTGGAAAAAAACCA
AAACCACCCCATATCCCCCATTTACTACTGGGTACTACTGGAAAAAATCG
GAAAATCGGGTAAACATTTTTACAAAAATCGGGAAATAGGGGAAACTTTT
TTTCGGGAAATCGGGAAATCGGGAAAACGTTTTTCCAAAAATCGGAAAAA
CAGGAGAATTTTTCTCAAAAATCCAAAATGCGTGAGAAATCAAACTTTTC
AAAAATTGTGTGAGACTATGTGGAAATGCATGAGTCTCGCACCCCATGCG
AGAGAGTTGGCACCTCTGATGTTCAAATTCGAATGTTCGAATGTTCGAAT
GTTCGAATGTTTACATTGACTCGATAAACCTTCATTTCAGCGGGATCTGG
TAGGATTTCATTCCAAGAAGTTTGAAGAATGATCTTGGACAAACTTGGCT
TGATCAATTTATAACAGAACAACTTTACATTTCTATTTTAGCAGATAATT
TCTGAACCTTTTTTTTTCGATTTTGGACCCAACACCCCTATTTTGGTACA
CAGATAGTAAAAATCAAAATCGATTTTGTACCCCACACCCCAATTATAGT
ACACAGGTAGTACATGACAAATTTTTTCCTCAAACACCCACCCACCCCAG
GATACATGCCACCTTCTGGTACACTGACCCCCCCCCCTGAAATAACATTG
AATTTAGGCAAAATTTAAGAATCTTAACATTTTAAATTTATTTTATAGCT
CTTAATTGAACACACTGATGGCTCAAGCAAAAAATTTCAAACATGGAAAC
CGAACAATTGTGTTGGAAAACAATTTTTTATTGAATATCTTATCGTTGAA
GTTTTGGTCGAAGGACAACGTTGCCTCGCTCTT Coding sequence (CDS) from alignment at scaffold_35:64004..71386- >TCONS_00060928 ID=TCONS_00060928|Name=TCONS_00060928|organism=Clytia hemisphaerica|type=CDS|length=600bp|location=Sequence derived from alignment at scaffold_35:64004..71386- (Clytia hemisphaerica)
CTCTTAATTGAACACACTGATGGCTCAAGCAAAAAATTTCAAACATGGAA
ACCGAACAATTGTGTTGGAAAACAATTTTTTATTGAATATCTTATCGTTG
AAGTTTTGGTCGAAGGACAACGTTGCCTCGCTCTTATGTTTATCACAAAT
GTTCTGCCAGGGAAGCGATGCTTAATTGTGGATGAACGCACATCGTCTGC
AACCAGAAAAAAGAAGATTGAGAAGCAAACCGTTTTTCAACATGGAATTA
TCCGCAGATCAAATCATTCTCCATCTAAACAGCAGCGAAAAGATTTAGAG
CTCTTAATTGAACACACTGATGGCTCAAGCAAAAAATTTCAAACATGGAA
ACCGAACAATTGTGTTGGAAAACAATTTTTTATTGAATATCTTATCGTTG
AAGTTTTGGTCGAAGGACAACGTTGCCTCGCTCTTATGTTTATCACAAAT
GTTCTGCCAGGGAAGCGATGCTTAATTGTGGATGAACGCACATCGTCTGC
AACCAGAAAAAAGAAGATTGAGAAGCAAACCGTTTTTCAACATGGAATTA
TCCGCAGATCAAATCATTCTCCATCTAAACAGCAGCGAAAAGATTTAGAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
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| TCONS_00060928-exon-scaffold_35-1575043694:71055..71386 | TCONS_00060928-exon-scaffold_35-1575043694:71055..71386 | Clytia hemisphaerica | exon |
| TCONS_00060928-exon-scaffold_35-1575043694:64004..64138 | TCONS_00060928-exon-scaffold_35-1575043694:64004..64138 | Clytia hemisphaerica | exon |
| TCONS_00060928-exon-scaffold_35-1510915933:71055..71386 | TCONS_00060928-exon-scaffold_35-1510915933:71055..71386 | Clytia hemisphaerica | exon |
| TCONS_00060928-exon-scaffold_35-1510915933:64004..64138 | TCONS_00060928-exon-scaffold_35-1510915933:64004..64138 | Clytia hemisphaerica | exon |
| TCONS_00060928-exon-scaffold_35-1491911889:71055..71386 | TCONS_00060928-exon-scaffold_35-1491911889:71055..71386 | Clytia hemisphaerica | exon |
| TCONS_00060928-exon-scaffold_35-1491911889:64004..64138 | TCONS_00060928-exon-scaffold_35-1491911889:64004..64138 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_35 | supercontig | scaffold_35:64004..71386 - |
Blast
The following BLAST results are available for this feature:
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