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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00060932 ID=TCONS_00060932|Name=TCONS_00060932|organism=Clytia hemisphaerica|type=transcript|length=4693bp tttttcttttcagtgTTAAAAAGTaaccaacaaacaaaaaaattatgcaa tAAGATGCAACCCAATGCTAATGTAAAAAGAGGTCTTGCATCTTTCAATA CCTCATTGAAAACTGTGAAAAGCAGGAAAACTGTCATTGTTTTCATTCTG GTTGGTTGCTTCTTCCTGTACTTGGCTTCTTCTTATTTACTTCCTGCACA CAAACATTTTCATCAAAGCCAGACCAAAGACTCTTCACaagacaaaaaga aaagatctTGTTTGGAGAACTATCTTGTGCAATGGACACAACTGATGGGC CTCAGTGATGCAATCATCAAGAAGATCCCAGCCTCGTCTACTGAAAATCG ATTCTTCCCTTTTTCAGgCAATGGAAAATTAGGCTTTGGCCTAGATAAAG ACAAGAAGCAATTCTATTTGAAGACTGACACACACGGCTACATTCAGTCA TTTGCACCCACTCTTGACCTCAAGATACAAGAGTCTCACATTGTGGAAGA AAAGGCTGTGATTATGAATTTGAAAGCTGGACTTGTTATTCTGGCTACAG TGTTTGATGTTGAGCAAAGCTGTGTCCTTGTCGAGGAAACATTTTTCGCA CATCGCCTACACAGTGGTCTATTTCAACATGTCATCAAAGTGAAAAATTC TGGACCCTTCTCCATCGATCTTGAATTATCCACAGCAGACgtcaagaaac tgaaaaaaattgaaaaaattcacaCAGCACATCACACTAACGGTCACCTA GCAACCATCAGtggtgaaatcaaaacaaagcgAAACAAAGAGAACAAAGA GGGCTTGGTCAAGTTTACATCTGTTCTCTCCAGCGTTGATAACAGGGTCT TGAAAGTACCACAGAAAGGTGAAAAAAGTATGAAACTCTTGTCTTATACT GATTTCATCTTTCTGGAACAAGAGCCGCAAGAAGTTGTGCCACCCACCAA CAAGACTAGGACTGGAAGAGACGTCAAAGATACAGACATCATCGCTTTGA CTGAGAAATCCAACACCATGCTCAAATCTCTCTCTAAAGATCACGTTCAG GATCAACATGTCAAAGCATGGAGTGAAATTTGGACGACTGGTATTTCAAT TTCATCAGATTCTGACCCAAATTCGCCATCACCATTACACGTCAACTTGA CTCAATACTACTTATACACCACACACAGTGGTAACTCAAccaaaaaatca accaaatccGTCAATTGTTACACAGGGCCACCAACTTTACACTATCCAAA ACATTGGGTGGTACCGACTAGTTTGAGCTCTTTAAGTTCATTGATGCAAC TATGGGAGGATTTCTTTACACGGAATAATTGCCCTATATCTTCTCTCACT GCTTTTTCATTACCTCAATTAATGGTATTGACTATCGTAGGCCTACATTA TCACAACAAGCAGCTACAAATGGCTCTCAACCCTTTGAACTTGCGTACCA ATATTTCATTACGACATGTATCCTTAGACTATTTCCATTCACAAGATCAA TTCGATCTGAAAGTTTTAGTGACCAATATCAAAACAGAACCGTATCAAAT TTATGTTATGAATAATGGTAAACATTCGCCGAAGATTTTCGGTTGTGGTA GTGCGTGTGAGCACGTTGTAGAGTTGGGCAGCTCCAGACTAAAATTCGTG ATTCACCCAACAGATCCGGTGACTCCTCTTTTTTACATCTCCAGCAACCG GACTCTTTTGGAGAAGATCCACCATTCAGACTTTATGCGAAAAGCAATAC ATTCTGCGAAGGAGATCAAAGCGACTGCTCACCATCATCAGCTTTCGCCT AAATTCTGGATCTCCGTTGTGGTGCTCATCGTtagttttcatgttattgt tttgaaaatgatataCAATGAGTGTCGGAAGGGCCGGGGAACGGTGCCAC GCCGAGGTCCTTATAGTTAGAAGAGTGTCTCTTTTTATACAAGGTTTTTA TACAAGTGAAATTTAAAATAACCAACATATATATATTGGTGcatatattt tttgatgattaaTTATTGCTGTTGTTATTATCCTTGGAGCTCAGGTGAGT GTTATCGCATTTATTCNAAAAATCAACCAAATCCGTCAATTGTTACACAG GGCCACCAACTTTACACTATCCAAAACATTGGGTGGTACCGACTAGTTTG AGCTCTTTAAGTTCATTGATGCAACTATGGGAGGATTTCTTCACACGAAA TAATTGCCCTATATCTTCTCTCACTGCTTTTTCATTACCTCAATTAATGG TATTGACTATCGTAGGCCTACATTATCACAACAAGCAACTACAAATGGCT CTCAACCCTTTGAACTTGCGTACCAATATTTCATTACGACATGTATCCTT AGACTATTTCCATTCACAAGATCAATTTGATCTGAAAGTTTTAGTGACCA ATATCAAAACAGAACCGTATCAAATTTATGTTATGAATAATGGTAAACAT TCGCCGAAGATTTTCGGTTGTGGTAGTGCGTGTGAGCACGTTGTAGAGTT GGGCAGCTCCAGACTAAAATTCGTGATTCACCCAACAGATCCGGTGACTC CTCTTTTTTACATCTCCAGCAACCGGACTCTTTTGGAGAAGATCCACCAT TCAGACTTTATGCGAAAAGCAATACATTCTGCGAAGGAGATCAAAGCGAC TGCTCACCATCATCAGCTTTCGCCTAAATTCTGGATCTCCGTTGTGGTGC TCATCGTtagttttcatgttattgttttgaaaatgatataCAATGAGTGT CGGAAGGGCCGGGGAACGGTGCCACGCCGAGGTCCTTATAGTTAGAAGAG TGTCTCTTTTTATACGAGGTTTTTATACAAGTGAAATTTAAAATAACCAA CATATATATTGGTGCatatattttttgatgaaattattgCTGTTGTTATT ATCCTTGGAGCTCAGGTGAGTGTTATCGCATTTATTAATTAATTATCACA AGAATTTATTTATATAATTGACTGGAGCTGAATTTTAAGGTCTTACTTTA CTAAACAAAATAatgattttacaatttttacccTTATTAATATTTGCATG cgatattttttttacaaagtgttggtttaaataaaattatttcgAATAAA GGAAGCAAACTAAGGCCATTCAACTAAGGCCATTCAACTGGGTATTCCAG AAAATTTACCCACCCTGTCGAGGAGGTCATATTTATGGCCCTGGGGATAC CTTTAATTAAACCTGGATAACCCAAGGGTTTAAGTGGAATCTCTTGAAAT GGGcagacattttgaaaattggataaGACTCCAACGGGTTCTACctcaaa aattgtcaaaaatccaggttgtgtattgaaattcaattcaaagcaGTTTG GCGTCCTCAACTTTAAAGCTATCTATTTGCAGAGGGTAAATCCTTGGAAC TGATTGTGTGCTGCATTGTGGGGCATCTTTAAATGACAAGTTGAATaagt tcaaaattgaaaaaaccttTAACTGTGGGTTTTTGCTATAAAATTGGAAT GGAAGTAGGGGAGTTGATACTAAAATCTAGGACATCAGGatgtttagtga cgtggtggtatacccaaaaaacttaaaaatccttttagtacaaTTTGAAC Aatgggtactaaaataccaaaaaggtggtatccagaataaaatttgaatt ttttttagtaaattggtactaaaattagtaattttcatgattttattaat ctttttcacaaattttcgtGATGTTTTAGTACTTACGAGATTTTAGTACC ACCCCCCACTGATTGAGGAGGGGGAAACCAGGGATACGTTTGATAACTAA GATGTTTTCACAGTTCGTTCGAGAGATAGTATTAtgcgttttttattttt ctaaaatatgatAAATTATGATAATGTGATTATAGCATGTATAATTGTTC TTTAGggagtttttttttcgaattagtCATTTTTACGTGAGGAAGGAAGG TATATATTACATGAGGATCATTTTTAAAGTGatcaaattgaagaaaatat tttatataataCTCTTACAAACCTAAAATACTTGGTTATTTCTACATCAT TTTATGTACAAAACTATTTACAGTATTAAATATCTGAACTTAAATAATTT GAGCTACAGTAGGTCCCGTAGAAGGAGGAAAACTCAGTCGGGTAAATCTT TTCGTCCGGGGAGACTTTTGTCGGGGGAAGACTTCGTCACTTTTTGCCGA CTATTTTCTACGATGCCACACACGTACACGTCACTTAGAACAAAAGGGAT TAATGAATTAGAAGAAATTAATGAATTAGAAGAAATNTACGATGCCACAC ACGTACACGTCACTTAGAACAAAAGGGATTAATGAATTAGAAGAAATGGG TTTTTTTCTTGGATTCTGTGCAAATCCAATCATTATCTATAAGACTTTCT TAGTAAAAGCATGGTAGAGAATGGTTGATAGTTTAGAATATCACTAAAAT CCCCTTCTATGGCTCATTTTTTATTATCTATATAAAAAATTATCGATGTA ccttgaaattcaatgtttgattttttaaacttcATTTTCCCTGATATAAA GGGAAATACTGAGTGTTTTATTCTCATACATCATGAGGGACGTCGTAATT TCgtctacgatatttgaagtatacAAGCACACTGATGGCCACGATCAACA ACAAAATTAATCCCACTACGATAAAAATCCAAACTTTCGTTCC Run BLAST on NCBI transcript from alignment at scaffold_350:22555..28307+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00060932 ID=TCONS_00060932|Name=TCONS_00060932|organism=Clytia hemisphaerica|type=transcript|length=5753bp|location=Sequence derived from alignment at scaffold_350:22555..28307+ (Clytia hemisphaerica) tttttcttttcagtgTTAAAAAGTaaccaacaaacaaaaaaattatgcaa
tAAGATGCAACCCAATGCTAATGTAAAAAGAGGTCTTGCATCTTTCAATA
CCTCATTGAAAACTGTGAAAAGCAGGAAAACTGTCATTGTTTTCATTCTG
GTTGGTTGCTTCTTCCTGTACTTGGCTTCTTCTTATTTACTTCCTGCACA
CAAACATTTTCATCAAAGCCAGACCAAAGACTCTTCACaagacaaaaaga
aaagatctTGTTTGGAGAACTATCTTGTGCAATGGACACAACTGATGGGC
CTCAGTGATGCAATCATCAAGAAGATCCCAGCCTCGTCTACTGAAAATCG
ATTCTTCCCTTTTTCAGGTGATATGCTAtgaattgaccaaaatattcgCT
TGTTTAAAAACTCTCAGTGAAGTTATCAAATCGAACAATGATTGTATTTG
TTNGAAGATCCCAGCCTCGTCTACTGAAAATCGATTCTTCCCTTTTTCAG
GTGATATGCTAtgaattgaccaaaatatttgcTTGTTTAAAAACTCTCAG
TGAAGTTATCAAATCGAACGATGATTGTATTTGTCatggaaatctaaaaa
aatgcaaactgaatttcactttttcctgAGAAAATTACTCTACTTTAATA
GAATAGATTTAAAAACTTGAACTCTTTAAGGAAACTGTCGTGTCGTAAAG
TTAtagattttttctttcaggCAATGGAAAATTAGGCTTTGGCCTAGATA
AAGACAAGAAGCAATTCTATTTGAAGACTGACACACACGGCTACATTCAG
TCATTTGCACCCACTCTTGACCTCAAGATACAAGAGTCTCACATTGTGGA
AGAAAAGGCTGTGATTATGAATTTGAAAGCTGGACTTGTTATTCTGGCTA
CAGTGTTTGATGTTGTAAGTAATCTTTGCATTTTCAAACACTCTTAATTT
TCAGTCACTCTAAATTAGAGCAAGAGACACTCATATTCGTTAAAATTAAT
TTGACTGTTCATTAATGTCGAACATTTAGCTTTTGTCAAGTTTGACAATT
TTAATTCTGTTAAAATCCCTGGAAAATTAGGACAGAGAAAACTAATTTTA
AACATGATTTTATCTCTGCAAATATCTGCAGATTGTCTAATATAGGAAAC
GAAAAGTTTAAAGTTTCTACACACTATTTCATGAAAACACAGTTTTTTGA
AACTGTCGGTAACTATTTGGCCAGAGACCCTAAAAAATTTATGCTCGAAC
AGCACTAATTCAAATTTCCATCCTCTAGGAGCAAAGCTGTGTCCTTGTCG
AGGAAACATTTTTCGCACATCGCCTACACAGTGGTCTATTTCAACATGTC
ATCAAAGTGAAAAATTCTGGACCCTTCTCCATCGATCTTGAATTATCCAC
AGCAGACgtcaagaaactgaaaaaaattgaaaaaattcacaCAGCACATC
ACACTAACGGTCACCTAGCAACCATCAGtggtgaaatcaaaacaaagcgA
AACAAAGAGAACAAAGAGGGCTTGGTCAAGTTTACATCTGTTCTCTCCAG
CGTTGATAACAGGGTCTTGAAAGTACCACAGAAAGGTGAAAAAAGTATGA
AACTCTTGTCTTATACTGATTTCATCTTTCTGGAACAAGAGCCGCAAGAA
GTTGTGCCACCCACCAACAAGACTAGGACTGGAAGAGACGTCAAAGATAC
AGACATCATCGCTTTGACTGAGAAATCCAACACCATGCTCAAATCTCTCT
CTAAAGATCACGTTCAGGATCAACATGTCAAAGCATGGAGTGAAATTTGG
ACGGTAAGACGgtactttcatttttaattttcgaatTCTCCAAAGCTACA
AAGCTACTCTAATTCATGGTTGAAATGAATGATGGGTAATCTGGTAGGAT
TGTGCTCTAATAACGGCTTTTTGTTGGTTTAAACGTAAAAATTTTAGACC
AACTAAAGTTGTCATCAGGGCCTGGTGGtactgattacccatgatttcTT
TCGAATGAACAGAAGCCTTTTTGTGCTTTAACTCCATCAAACTCCTCTTA
TACAAATCCTTAAAAAGATATTCTAGATACAATGGTCTATTGTGCAGTCA
TACTCCAACATCCATTTAAAAATGTATTTCTTATTTTGTTTTATAGACTG
GTATTTCAATTTCATCAGATTCTGACCCAAATTCGCCATCACCATTACAC
GTCAACTTGACTCAATACTACTTATACACCACACACAGTGGTAACTCAAc
caaaaaatcaaccaaatccGTCAATTGTTACACAGGGCCACCAACTTTAC
ACTATCCAAAACATTGGGTGGTACCGACTAGTTTGAGCTCTTTAAGTTCA
TTGATGCAACTATGGGAGGATTTCTTTACACGGAATAATTGCCCTATATC
TTCTCTCACTGCTTTTTCATTACCTCAATTAATGGTATTGACTATCGTAG
GCCTACATTATCACAACAAGCAGCTACAAATGGCTCTCAACCCTTTGAAC
TTGCGTACCAATATTTCATTACGACATGTATCCTTAGACTATTTCCATTC
ACAAGATCAATTCGATCTGAAAGTTTTAGTGACCAATATCAAAACAGAAC
CGTATCAAATTTATGTTATGAATAATGGTAAACATTCGCCGAAGATTTTC
GGTTGTGGTAGTGCGTGTGAGCACGTTGTAGAGTTGGGCAGCTCCAGACT
AAAATTCGTGATTCACCCAACAGATCCGGTGACTCCTCTTTTTTACATCT
CCAGCAACCGGACTCTTTTGGAGAAGATCCACCATTCAGACTTTATGCGA
AAAGCAATACATTCTGCGAAGGAGATCAAAGCGACTGCTCACCATCATCA
GCTTTCGCCTAAATTCTGGATCTCCGTTGTGGTGCTCATCGTtagttttc
atgttattgttttgaaaatgatataCAATGAGTGTCGGAAGGGCCGGGGA
ACGGTGCCACGCCGAGGTCCTTATAGTTAGAAGAGTGTCTCTTTTTATAC
AAGGTTTTTATACAAGTGAAATTTAAAATAACCAACATATATATATTGGT
GcatatattttttgatgattaaTTATTGCTGTTGTTATTATCCTTGGAGC
TCAGGTGAGTGTTATCGCATTTATTCNAAAAATCAACCAAATCCGTCAAT
TGTTACACAGGGCCACCAACTTTACACTATCCAAAACATTGGGTGGTACC
GACTAGTTTGAGCTCTTTAAGTTCATTGATGCAACTATGGGAGGATTTCT
TCACACGAAATAATTGCCCTATATCTTCTCTCACTGCTTTTTCATTACCT
CAATTAATGGTATTGACTATCGTAGGCCTACATTATCACAACAAGCAACT
ACAAATGGCTCTCAACCCTTTGAACTTGCGTACCAATATTTCATTACGAC
ATGTATCCTTAGACTATTTCCATTCACAAGATCAATTTGATCTGAAAGTT
TTAGTGACCAATATCAAAACAGAACCGTATCAAATTTATGTTATGAATAA
TGGTAAACATTCGCCGAAGATTTTCGGTTGTGGTAGTGCGTGTGAGCACG
TTGTAGAGTTGGGCAGCTCCAGACTAAAATTCGTGATTCACCCAACAGAT
CCGGTGACTCCTCTTTTTTACATCTCCAGCAACCGGACTCTTTTGGAGAA
GATCCACCATTCAGACTTTATGCGAAAAGCAATACATTCTGCGAAGGAGA
TCAAAGCGACTGCTCACCATCATCAGCTTTCGCCTAAATTCTGGATCTCC
GTTGTGGTGCTCATCGTtagttttcatgttattgttttgaaaatgatata
CAATGAGTGTCGGAAGGGCCGGGGAACGGTGCCACGCCGAGGTCCTTATA
GTTAGAAGAGTGTCTCTTTTTATACGAGGTTTTTATACAAGTGAAATTTA
AAATAACCAACATATATATTGGTGCatatattttttgatgaaattattgC
TGTTGTTATTATCCTTGGAGCTCAGGTGAGTGTTATCGCATTTATTAATT
AATTATCACAAGAATTTATTTATATAATTGACTGGAGCTGAATTTTAAGG
TCTTACTTTACTAAACAAAATAatgattttacaatttttacccTTATTAA
TATTTGCATGcgatattttttttacaaagtgttggtttaaataaaattat
ttcgAATAAAGGAAGCAAACTAAGGCCATTCAACTAAGGCCATTCAACTG
GGTATTCCAGAAAATTTACCCACCCTGTCGAGGAGGTCATATTTATGGCC
CTGGGGATACCTTTAATTAAACCTGGATAACCCAAGGGTTTAAGTGGAAT
CTCTTGAAATGGGcagacattttgaaaattggataaGACTCCAACGGGTT
CTACctcaaaaattgtcaaaaatccaggttgtgtattgaaattcaattca
aagcaGTTTGGCGTCCTCAACTTTAAAGCTATCTATTTGCAGAGGGTAAA
TCCTTGGAACTGATTGTGTGCTGCATTGTGGGGCATCTTTAAATGACAAG
TTGAATaagttcaaaattgaaaaaaccttTAACTGTGGGTTTTTGCTATA
AAATTGGAATGGAAGTAGGGGAGTTGATACTAAAATCTAGGACATCAGGa
tgtttagtgacgtggtggtatacccaaaaaacttaaaaatccttttagta
caaTTTGAACAatgggtactaaaataccaaaaaggtggtatccagaataa
aatttgaattttttttagtaaattggtactaaaattagtaattttcatga
ttttattaatctttttcacaaattttcgtGATGTTTTAGTACTTACGAGA
TTTTAGTACCACCCCCCACTGATTGAGGAGGGGGAAACCAGGGATACGTT
TGATAACTAAGATGTTTTCACAGTTCGTTCGAGAGATAGTATTAtgcgtt
ttttatttttctaaaatatgatAAATTATGATAATGTGATTATAGCATGT
ATAATTGTTCTTTAGggagtttttttttcgaattagtCATTTTTACGTGA
GGAAGGAAGGTATATATTACATGAGGATCATTTTTAAAGTGatcaaattg
aagaaaatattttatataataCTCTTACAAACCTAAAATACTTGGTTATT
TCTACATCATTTTATGTACAAAACTATTTACAGTATTAAATATCTGAACT
TAAATAATTTGAGCTACAGTAGGTCCCGTAGAAGGAGGAAAACTCAGTCG
GGTAAATCTTTTCGTCCGGGGAGACTTTTGTCGGGGGAAGACTTCGTCAC
TTTTTGCCGACTATTTTCTACGATGCCACACACGTACACGTCACTTAGAA
CAAAAGGGATTAATGAATTAGAAGAAATTAATGAATTAGAAGAAATNTAC
GATGCCACACACGTACACGTCACTTAGAACAAAAGGGATTAATGAATTAG
AAGAAATGGGTTTTTTTCTTGGATTCTGTGCAAATCCAATCATTATCTAT
AAGACTTTCTTAGTAAAAGCATGGTAGAGAATGGTTGATAGTTTAGAATA
TCACTAAAATCCCCTTCTATGGCTCATTTTTTATTATCTATATAAAAAAT
TATCGATGTAccttgaaattcaatgtttgattttttaaacttcATTTTCC
CTGATATAAAGGGAAATACTGAGTGTTTTATTCTCATACATCATGAGGGA
CGTCGTAATTTCgtctacgatatttgaagtatacAAGCACACTGATGGCC
ACGATCAACAACAAAATTAATCCCACTACGATAAAAATCCAAACTTTCGT
TCC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
Feature Name | Unique Name | Species | Type |
TCONS_00060932-exon-scaffold_350-1491911889:22555..22921 | TCONS_00060932-exon-scaffold_350-1491911889:22555..22921 | Clytia hemisphaerica | exon |
TCONS_00060932-exon-scaffold_350-1510915933:22555..22921 | TCONS_00060932-exon-scaffold_350-1510915933:22555..22921 | Clytia hemisphaerica | exon |
TCONS_00060932-exon-scaffold_350-1575043694:22555..22921 | TCONS_00060932-exon-scaffold_350-1575043694:22555..22921 | Clytia hemisphaerica | exon |
TCONS_00060932-exon-scaffold_350-1491911889:23275..23468 | TCONS_00060932-exon-scaffold_350-1491911889:23275..23468 | Clytia hemisphaerica | exon |
TCONS_00060932-exon-scaffold_350-1510915933:23275..23468 | TCONS_00060932-exon-scaffold_350-1510915933:23275..23468 | Clytia hemisphaerica | exon |
TCONS_00060932-exon-scaffold_350-1575043694:23275..23468 | TCONS_00060932-exon-scaffold_350-1575043694:23275..23468 | Clytia hemisphaerica | exon |
TCONS_00060932-exon-scaffold_350-1491911889:23833..24357 | TCONS_00060932-exon-scaffold_350-1491911889:23833..24357 | Clytia hemisphaerica | exon |
TCONS_00060932-exon-scaffold_350-1510915933:23833..24357 | TCONS_00060932-exon-scaffold_350-1510915933:23833..24357 | Clytia hemisphaerica | exon |
TCONS_00060932-exon-scaffold_350-1575043694:23833..24357 | TCONS_00060932-exon-scaffold_350-1575043694:23833..24357 | Clytia hemisphaerica | exon |
TCONS_00060932-exon-scaffold_350-1491911889:24701..28307 | TCONS_00060932-exon-scaffold_350-1491911889:24701..28307 | Clytia hemisphaerica | exon |
TCONS_00060932-exon-scaffold_350-1510915933:24701..28307 | TCONS_00060932-exon-scaffold_350-1510915933:24701..28307 | Clytia hemisphaerica | exon |
TCONS_00060932-exon-scaffold_350-1575043694:24701..28307 | TCONS_00060932-exon-scaffold_350-1575043694:24701..28307 | Clytia hemisphaerica | exon |
Position
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
scaffold_350 | supercontig | scaffold_350:22555..28307 + |
Blast
The following BLAST results are available for this feature:
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