TCONS_00060935 (transcript) - C. hemisphaerica

Overview
NameTCONS_00060935
Unique NameTCONS_00060935
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1457

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00060935 ID=TCONS_00060935|Name=TCONS_00060935|organism=Clytia hemisphaerica|type=transcript|length=1457bp
CTAGCGTTTATCCGTGGTTTCAATGCAGAGACAGAATTGGATGTTGAGCT
CACCAAGAATGAAATGATCCAACTTTTGGGGACGTTGAACGGAGACCAAG
CTTCATCGGTCCCAGACTTCCTGTTCTTCACACAAGAAGGGCAAATTGAT
TACATTCAAACTAAAGGTCCGCCTCGAACTGAAAAACCAACTCTGCCAGG
AAGCAAACCCAAACCACCCAAAAGATCGGACGCCGAGATAACATTATCCA
AAGCATTGAATAGGATTAAAAAAGGACACAATGTGCCGGTGATCGAAAAA
TGGGCGAAAGTATTGGACCTTCTGTTGTTCACAGACCTCACTGCTGCACA
ACGAGATTGTAGTATTGACCGGATAGTCAGGAATGCGGACACGTCAATTA
ATACGTGTAAGAACAGTGATGGGAGCTCCACCAGTGGCAAATCATCAACC
AGTGGCGGTTCAAGCGGTAACAAAGGACAGAAGGGGAAACAAAGAAAAGA
CGAAGCAGCGAtggaagaaaaatttgaaaatgaggcAAAGAGAATGGAAA
TAAGTTATCAAGATATCAAAGAAGAAGTGAAGGAATATTTGGAGGATTTG
GAAAATACTGATGATGACGAAAATTACGGAGCCGAGAGTGAAAGCGaatc
ttttgatgaaattgaagaCACAGAAGAACATTTTGCAAGACGTTTTCAAA
GAGATTTGAAAAGAAGTTATCGACGAAATGTTTATCAGCCAGGAAATATA
GTTCAAACATTGGACACACAGCGCATGCGTAGAGGCTTGACGTACAGGTA
TTCCAATTACGGACAATGTTTTACGGAAGGTTCGGAGGGAGCTACGTCAG
ACACAGTTCGACTTTGTCAAACGTGCTATCATACTATCGACTTTGGAGAG
GATGTTGTTCCGCAGTACGCGAATAGCGTTGAATGTTCAGATAGTGCGAC
CATGTGTATCAGTGGAGATGGAACATGCACGCAGAAAGTCATCTATTACT
CCTTCAAGAAGCTGGTGAACGAACGTAACAACAAATGGGTCAGCTTCAAC
CAGCCACTAAATGTCAGCTGTGAATGTGAATGTATAACGAATTCAATGAC
TCACATGTATATGGTTGGtgaatcaaattaaaaaagatgaaAGCTCTGTG
TATTACGTGAAGTAATTTGTGGTTGTACGGAATAAAACCCTCCGTAGTTG
TCCCAGACTTTCATGCATTGCGTTATGTTACTTTTCTGGCGATATGAATT
CatgtaaacaaagatttagatgAAACCTTGTGGTTAAACAATGTTGAAAC
TAATTCAACCTTTCCTAATTTTCTTGGATACTTTGTTGAAGAATATGAGA
TTTAATTACTGATTCACTAATCACTCAGTAATCAACTAGAAGCTGTCGAC
AATAACAATGATGCTGTCAGGTTTTTTAGTTACCCGAAAATGCTTCACGA
ATAATGG
Run BLAST on NCBI

protein sequence of TCONS_00060935-protein

>TCONS_00060935-protein ID=TCONS_00060935-protein|Name=TCONS_00060935-protein|organism=Clytia hemisphaerica|type=polypeptide|length=376bp
LAFIRGFNAETELDVELTKNEMIQLLGTLNGDQASSVPDFLFFTQEGQID
YIQTKGPPRTEKPTLPGSKPKPPKRSDAEITLSKALNRIKKGHNVPVIEK
WAKVLDLLLFTDLTAAQRDCSIDRIVRNADTSINTCKNSDGSSTSGKSST
SGGSSGNKGQKGKQRKDEAAMEEKFENEAKRMEISYQDIKEEVKEYLEDL
ENTDDDENYGAESESESFDEIEDTEEHFARRFQRDLKRSYRRNVYQPGNI
VQTLDTQRMRRGLTYRYSNYGQCFTEGSEGATSDTVRLCQTCYHTIDFGE
DVVPQYANSVECSDSATMCISGDGTCTQKVIYYSFKKLVNERNNKWVSFN
QPLNVSCECECITNSMTHMYMVGESN
Run BLAST on NCBI

transcript from alignment at scaffold_350:39307..40985+

Legend: exonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00060935 ID=TCONS_00060935|Name=TCONS_00060935|organism=Clytia hemisphaerica|type=transcript|length=1679bp|location=Sequence derived from alignment at scaffold_350:39307..40985+ (Clytia hemisphaerica)
CTAGCGTTTATCCGTGGTTTCAATGCAGAGACAGAATTGGATGTTGAGCT
CACCAAGAATGAAATGATCCAACTTTTGGGGACGTTGAACGGAGACCAAG
CTTCATCGGTCCCAGACTTCCTGTTCTTCACACAAGAAGGGCAAATTGAT
TACATTCAAACTAAAGGTCCGCCTCGAACTGAAAAACCAACTCTGCCAGG
AAGCAAACCCAAACCACCCAAAAGATCGGACGCCGAGATAACATTATCCA
AAGCATTGAATAGGATTAAAAAAGGACACAATGTGCCGGTGATCGAAAAA
TGGGCGAAAGTATTGGACCTTCTGTTGTTCACAGACCTCACTGCTGCACA
ACGAGATTGTAGTATTGACCGGATAGTCAGGAATGCGGACACGTCAATTA
ATACGTGTAAGAACAGTGATGGGAGCTCCACCAGTGGCAAATCATCAACC
AGTGGCGGTTCAAGCGGTAACAAAGGACAGAAGGGGAAACAAAGAAAAGA
CGAAGCAGCGAtggaagaaaaatttgaaaatgaggcAAAGAGAATGGAAA
TAAGTTATCAAGATATCAAAGAAGAAGTGAAGGAATATTTGGAGGATTTG
GAAAATACTGATGATGACGAAAATTACGGAGCCGAGAGTGAAAGCGaatc
ttttgatgaaattgaagaCACAGAAGAACATTTTGCAAGACGTTTTCAAA
GAGATTTGAAAAGAAGTTATCGACGAAATGTTTATCAGCCAGGAAATATA
GTTCAAACATTGGACACACAGCGCATGCGTAGAGGCTTGACGTACAGGTA
TTCCAATTACGGACAATGTTTTACGGAAGGTTCGGAGGGAGCTACGTCAG
ACACAGTTCGACTTTGTCAAACGTGCTATCATACTATCGACTTTGGAGAG
GATGTGTAAGTTTAATTACATTTTTTCAGCTTATAATATTTTGCAATGCA
TATTTCAAGGATGAAATTAAATCTTTGTTCTATATCCTTCATAGTATAAA
TCCATTTTACATAGGAAGTGGAAAGACGAGAGCAGCTGGAAAGTCGACCT
TCATTTTAAACTATCGCCAGTTTCAGCAGCAATAATAAGATAACAAAATC
GCTAATGTTTTAACATTCTTATTACAGTGTTCCGCAGTACGCGAATAGCG
TTGAATGTTCAGATAGTGCGACCATGTGTATCAGTGGAGATGGAACATGC
ACGCAGAAAGTCATCTATTACTCCTTCAAGAAGCTGGTGAACGAACGTAA
CAACAAATGGGTCAGCTTCAACCAGCCACTAAATGTCAGCTGTGAATGTG
AATGTATAACGAATTCAATGACTCACATGTATATGGTTGGtgaatcaaat
taaaaaagatgaaAGCTCTGTGTATTACGTGAAGTAATTTGTGGTTGTAC
GGAATAAAACCCTCCGTAGTTGTCCCAGACTTTCATGCATTGCGTTATGT
TACTTTTCTGGCGATATGAATTCatgtaaacaaagatttagatgAAACCT
TGTGGTTAAACAATGTTGAAACTAATTCAACCTTTCCTAATTTTCTTGGA
TACTTTGTTGAAGAATATGAGATTTAATTACTGATTCACTAATCACTCAG
TAATCAACTAGAAGCTGTCGACAATAACAATGATGCTGTCAGGTTTTTTA
GTTACCCGAAAATGCTTCACGAATAATGG

Coding sequence (CDS) from alignment at scaffold_350:39307..40985+

>TCONS_00060935 ID=TCONS_00060935|Name=TCONS_00060935|organism=Clytia hemisphaerica|type=CDS|length=2262bp|location=Sequence derived from alignment at scaffold_350:39307..40985+ (Clytia hemisphaerica)
CTAGCGTTTATCCGTGGTTTCAATGCAGAGACAGAATTGGATGTTGAGCT
CACCAAGAATGAAATGATCCAACTTTTGGGGACGTTGAACGGAGACCAAG
CTTCATCGGTCCCAGACTTCCTGTTCTTCACACAAGAAGGGCAAATTGAT
TACATTCAAACTAAAGGTCCGCCTCGAACTGAAAAACCAACTCTGCCAGG
AAGCAAACCCAAACCACCCAAAAGATCGGACGCCGAGATAACATTATCCA
AAGCATTGAATAGGATTAAAAAAGGACACAATGTGCCGGTGATCGAAAAA
TGGGCGAAAGTATTGGACCTTCTGTTGTTCACAGACCTCACTGCTGCACA
ACGAGATTGTAGTATTGACCGGATAGTCAGGAATGCGGACACGTCAATTA
ATACGTGTAAGAACAGTGATGGGAGCTCCACCAGTGGCAAATCATCAACC
AGTGGCGGTTCAAGCGGTAACAAAGGACAGAAGGGGAAACAAAGAAAAGA
CGAAGCAGCGAtggaagaaaaatttgaaaatgaggcAAAGAGAATGGAAA
TAAGTTATCAAGATATCAAAGAAGAAGTGAAGGAATATTTGGAGGATTTG
GAAAATACTGATGATGACGAAAATTACGGAGCCGAGAGTGAAAGCGaatc
ttttgatgaaattgaagaCACAGAAGAACATTTTGCAAGACGTTTTCAAA
GAGATTTGAAAAGAAGTTATCGACGAAATGTTTATCAGCCAGGAAATATA
GTTCAAACATTGGACACACAGCGCATGCGTAGAGGCTTGACGTACAGGTA
TTCCAATTACGGACAATGTTTTACGGAAGGTTCGGAGGGAGCTACGTCAG
ACACAGTTCGACTTTGTCAAACGTGCTATCATACTATCGACTTTGGAGAG
GATGTTGTTCCGCAGTACGCGAATAGCGTTGAATGTTCAGATAGTGCGAC
CATGTGTATCAGTGGAGATGGAACATGCACGCAGAAAGTCATCTATTACT
CCTTCAAGAAGCTGGTGAACGAACGTAACAACAAATGGGTCAGCTTCAAC
CAGCCACTAAATGTCAGCTGTGAATGTGAATGTATAACGAATTCAATGAC
TCACATGTATATGGTTGGtgaatcaaattaaCTAGCGTTTATCCGTGGTT
TCAATGCAGAGACAGAATTGGATGTTGAGCTCACCAAGAATGAAATGATC
CAACTTTTGGGGACGTTGAACGGAGACCAAGCTTCATCGGTCCCAGACTT
CCTGTTCTTCACACAAGAAGGGCAAATTGATTACATTCAAACTAAAGGTC
CGCCTCGAACTGAAAAACCAACTCTGCCAGGAAGCAAACCCAAACCACCC
AAAAGATCGGACGCCGAGATAACATTATCCAAAGCATTGAATAGGATTAA
AAAAGGACACAATGTGCCGGTGATCGAAAAATGGGCGAAAGTATTGGACC
TTCTGTTGTTCACAGACCTCACTGCTGCACAACGAGATTGTAGTATTGAC
CGGATAGTCAGGAATGCGGACACGTCAATTAATACGTGTAAGAACAGTGA
TGGGAGCTCCACCAGTGGCAAATCATCAACCAGTGGCGGTTCAAGCGGTA
ACAAAGGACAGAAGGGGAAACAAAGAAAAGACGAAGCAGCGAtggaagaa
aaatttgaaaatgaggcAAAGAGAATGGAAATAAGTTATCAAGATATCAA
AGAAGAAGTGAAGGAATATTTGGAGGATTTGGAAAATACTGATGATGACG
AAAATTACGGAGCCGAGAGTGAAAGCGaatcttttgatgaaattgaagaC
ACAGAAGAACATTTTGCAAGACGTTTTCAAAGAGATTTGAAAAGAAGTTA
TCGACGAAATGTTTATCAGCCAGGAAATATAGTTCAAACATTGGACACAC
AGCGCATGCGTAGAGGCTTGACGTACAGGTATTCCAATTACGGACAATGT
TTTACGGAAGGTTCGGAGGGAGCTACGTCAGACACAGTTCGACTTTGTCA
AACGTGCTATCATACTATCGACTTTGGAGAGGATGTTGTTCCGCAGTACG
CGAATAGCGTTGAATGTTCAGATAGTGCGACCATGTGTATCAGTGGAGAT
GGAACATGCACGCAGAAAGTCATCTATTACTCCTTCAAGAAGCTGGTGAA
CGAACGTAACAACAAATGGGTCAGCTTCAACCAGCCACTAAATGTCAGCT
GTGAATGTGAATGTATAACGAATTCAATGACTCACATGTATATGGTTGGt
gaatcaaattaa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_038255XLOC_038255Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00060935-proteinTCONS_00060935-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00060935-exon-scaffold_350-1491911889:39307..40211TCONS_00060935-exon-scaffold_350-1491911889:39307..40211Clytia hemisphaericaexon
TCONS_00060935-exon-scaffold_350-1510915933:39307..40211TCONS_00060935-exon-scaffold_350-1510915933:39307..40211Clytia hemisphaericaexon
TCONS_00060935-exon-scaffold_350-1575043694:39307..40211TCONS_00060935-exon-scaffold_350-1575043694:39307..40211Clytia hemisphaericaexon
TCONS_00060935-exon-scaffold_350-1491911889:40434..40985TCONS_00060935-exon-scaffold_350-1491911889:40434..40985Clytia hemisphaericaexon
TCONS_00060935-exon-scaffold_350-1510915933:40434..40985TCONS_00060935-exon-scaffold_350-1510915933:40434..40985Clytia hemisphaericaexon
TCONS_00060935-exon-scaffold_350-1575043694:40434..40985TCONS_00060935-exon-scaffold_350-1575043694:40434..40985Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_350supercontigscaffold_350:39307..40985 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.85408	3.23507	1.78157	2.22051	1.46511	0.666465	4.97056	5.50878	1.32078	1.60548	0.980377	0.494403	11.6274	9.98992	0.37127	0.259845	0.896303	0.765568	17.1255	21.2502	0.274855	0.402194	0.84903	0.948264	0.0610431	0.0272397	0.07796	0.083201	0.567945	0.420522
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR029034Cystine-knot_cytokine
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00060935 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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