TCONS_00060952 (transcript) - C. hemisphaerica

Overview
NameTCONS_00060952
Unique NameTCONS_00060952
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1090

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00060952 ID=TCONS_00060952|Name=TCONS_00060952|organism=Clytia hemisphaerica|type=transcript|length=1090bp
aggCTAGGAAAAGAGTAtaaaagaaacaagaaaaatctggAGAAATGGTA
TCTTTCATTTGTGACGCATGTGGGAACACTGTTAAGAAGAATCAAGTTGA
AAAACATTACCAAACAGCGTGTAGAAACTGCTCTGTTCTATCATGTATTG
ATTGTGGGGTTGATTTCCCTGGCGATGCATATGCCTCTCACACAAGTTGC
ATATCTGAAGCTGAAAAGTACCAAGGACATCTCTATCAACCGAAAGATAA
GGAAAACAAAGGGgaagcaaaacaaaaacaatggaCACAGCAACTACAGG
GTGCATCCAGTAATGTTAAAGATCCAAAGCTACGATCACTCCTTGAAAAG
TTGTCAGAATATTCAAATATCCCAcgaaaaaggaaaaagtttGAAaattt
ttgcaaaaacagTGTCAAGGTATACGATACAAAAACACTTGATGCACTTT
GGGATGCATTTAATGAAGGCTCAAACACAAAAACGCCTACAACGAACGGT
AATACACAAAATGGACATAACAATACAACAGATGTTAACACGAATGGTAC
AACgaacaacaacaaggatgatagtgaagatgaaaataaagtcacagaat
caaagaaaaagaaaaagaagaggaaGCTTGAAGAAGATGAGGAGAAAGac
caagataaacaaaaaaataagaaaaagaaaaagaagatagCTGACCAAGA
AGAAATAGAAGAGGTGCAAGGagaagaaaaagatgaaaatgataaCCAAC
ATAAAGGGAAATTCCACTGGCATAAGGCAATCAAAACGGCGTTGAAAGAA
TCAGATGATCACGAACTTCCTTTGAAAAAGCTCCGAAAAAAGGTAATAGC
GGCATACGAAGCACATGGCACGGACCATCGAGCGAGCGATCTACAGCAGT
GTCGAACATTGTTCGAAAAGAAATTGAACACTTATCCAAAAGCTAAAATT
ATCAAAGATAAATATGTGAAATTATGTACATGATAATACAACAAAATGAA
TACTTTTTATAACAATTAAATCAAATGATACCCTTAATGTTGTTCCTGCA
GGTTGGCCCTGGATTTTAGTTGTTGAACAGAAAAATGATA
Run BLAST on NCBI

transcript from alignment at scaffold_350:165450..170554+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00060952 ID=TCONS_00060952|Name=TCONS_00060952|organism=Clytia hemisphaerica|type=transcript|length=5105bp|location=Sequence derived from alignment at scaffold_350:165450..170554+ (Clytia hemisphaerica)
aggCTAGGAAAAGAGTAtaaaagaaacaagaaaaatctggAGAAATGGTA
TCTTTCATTTGTGACGCATGTGGGAACACTGTTAAGAAGAATCAAGTTGA
AAAACATTACCAAACAGCGTGTAGAAACTGCTCTGTTCTATCATGTATTG
ATTGTGGGGTTGATTTCCCTGGCGATGCATATGCCTCTCACACAAGTTGC
ATATCTGAAGCTGAAAAGTACCAAGGACATCTCTATCAACCGAAAGATAA
GGAAAACAAAGGGgaagcaaaacaaaaacaatggaCACAGGTTTGTAAGA
TAATTACACACTAGCTGTTAATCATTTGCCACAAGAATTTGTCAGAACTC
AATGCTGTCAGGCTGCTTGTCTCGCAGGTACAAATATCATTTAGAGATGT
TTTTTAATCAAGCAAATTTTCTGAATAATCTCTTCTTTATTGTATTCCAG
CAACTACAGGGTGCATCCAGTAATGTTAAAGATCCAAAGCTACGATCACT
CCTTGAAAAGTTGTCAGAATATTCAAATATCCCAcgaaaaaggaaaaagt
ttGAAGTAAGCCAGCCTCTTAAAATTTATAAATAGTAGAATTTAGTATAT
tagaagaaacttttgatctaaatTATTATAAGAACCGGTTATTAGGCCCA
TTATATGAAGCATATCGAGTTTAAAGTGTGGAAGGGCCTTGAGTTGAAAC
TTTTGAATGGGGAAATgtagccacttatttcccatctaaaacATGTGACC
TGTCTGGTTTTCACACAATCACCAGATTTCCAGGTTATTTAGAATTATCA
ATATAAACTTAATACACTATAGGTTAGTTTTTTGTGTCTCCGTCTAAATC
GAGTTTCCTTTACTTATTATTAAATGAAgcactttcaaagtttttttctc
tcatagaatttttgcaaaaacagTGTCAAGGTATACGATACAAAAACACT
TGATGCACTTTGGGATGCATTTAATGAAGGCTCAAACACAAAAACGGTAT
GTAATTATATTAGATTTTAAGGTTGAGAACTCACTAAGTTTACTCAttgc
gtattttttttaaatttcaatcaaGCTTTACTTTGGAGAACTGTGTATGT
AATTTCTGATCAAcgatttgaaaatatgataaagaAGATATAAAGGAGTA
TCACCTGAATGTAGCAAATTATGTTACGAATCCACTGAAAGACTGAAAAA
CTTAAtaaactgaaatttcattttccgCAACAGCCTACAACGAACGGTAA
TACACAAAATGGACATAACAATACAACAGATGTTAACACGAATGGTACAA
Cgaacaacaacaaggatgatagtgaagatgaaaataaagtcacagaatca
aagaaaaagaaaaagaagaggaaGCTTGAAGAAGATGAGGAGAAAGacca
agataaacaaaaaaataagaaaaagaaaaagaagatagCTGACCAAGAAG
AAATAGGTATTTATTGTCAAATATGCTTAAGTTTGAATTTCCTGCAGCct
aaatttatttgtttttaaatgacgTTGAGATGACGATACCCATCCTATTG
TAATGTTTTCCCTTTTCTCAGACGGGTTGATTTTGTTTTCAGAAGAGGTG
CAAGGagaagaaaaagatgaaaatgataaCCAACATAAAGGTACTTTTTT
CAttaggaaatatttttgagGCTCTCTGCTCCAAATCTCCAAGAAATAGA
TGTCCCATTTGATGTGTTTGACCTTGTTACACTTGTTTACACCATTATCA
TTAACATAGTATCCATTATTACAGATTATTATCATCTAAAAATTATCCAT
TATCTTGTAAGCATTTTCAGGGCAGGGCCCGTAGgttaaaaaaaaccttg
aaatggcattttttgtaaGTAGTCGAAAAGAGACATAATTCGAGGCAAAA
TCTTGTAAATTTCTCAAGGGAACTtgcttttataatttttaaatcttttt
tagcctaatatttatttttttttgagttgaaaaattactttcactccttt
ataaaaattatattgtttttcGTCAGGAAACACGTGCCTAAATTCCGTTG
CAGAGGAAGGGTAGATTTTGCCGACTGAAAAGCCAGTAATCTAAAGAGAA
CTGATGTGACCCCCTTGCTTTCAAATAGGAagaaatctatatattaatag
cggtgctttgtgtgtctgtgtgtcaccactttcgttttcgctttgtttgt
gttttaaaattatgacttttagtctcttgctccacaagtttgttctattg
gattcgcgccatttgcaaaagatcggatagagcttggtttagactttatt
cagcctttgttttgaaaaggccGATCTacattttagtaattttaatttct
gcccagagttgtctttttctctcttcttttgttttaaatgttttcgaatg
tatttaacgatcgtatttattaatgacattcgtattcttttcaaagcaaa
acaatttcatttcaaagaaaagaatatttcaaaagtaaatcagaacataa
aaatcaaaatgtttgtggacaacaacagcattcaaaggatATAATCGATA
TAATgatataaagcataagaaaaaattagttcacttctttcttcttataa
aaatattcaagtcgtcGTTATGTTAAAAAGTGtatacgtcattttttatg
tttaaattcgaaaagttatgccaagggtttaaaaaagaaacttagaattg
tcttatttctttcgatctgataaaaaacaaagagttgcactattctttgt
gaccttcccactttttcctgaaaaattgtcatttaaactggCATATTTAA
Cgcaagcgaagcgagaaaaataactacctgcagagtcgttttaaacgaca
ctggtacagtaaacgatgctctttttgataacttttgactaaaaaattaT
ATCACGGGGGGACAGTacacgatccaaatatggttaaaagataagacagC
CGGGGTaggttagagttaaacgttgtagagatttctttttttttgtttga
tcgcttttggacctaccccggtggaggtcctataaattaacctttgtccg
tctgtccgtccgttagttaccagcttttctcgagattggctcattagttt
tttNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNcaa
tgcccaaaatgtgacggagcccgattttcgaaaaaaaattttttggggca
aatttgggccaaaaaacggctaaaaaacgggttttttgaactttgtgaag
aattggatcattaattttttctgattttttgcacgaaagtagggtaccat
cataggtataagatggttcaagcagatttttgcaaaaaaattttgttggc
tcaaaaaccgcatgtttatctataagaatcactattaataagcatacatc
aatgttcttagtcaaattactcaatttttttatgagataattgttttttc
tgctcaagagggcttacttttgaagaatatgtgtgtttagacaggaaatt
tgggttgcttggcgtgtttttatagaaaaactggccaaattNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNtagaaaaactggccaaattcgatattttt
ttataagcacattatcaattacttaggtattggcttttctcgagattggc
tctttcattctttatgattttttacacgaagatgcataactataaaccct
tgaatgtgacagaacccgattttcgaaaaaaaatgtttctgggtaaattt
aggccaaaaaacggttaaaaaagaaggttttttggacttcgtgaaaaatt
ggatcattaattttttctaattttttgcataaaagtagggtaccatcata
ggtaaaagatggcttaagcagatttttNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNcactattaataagcatacatcaatgttcttagcca
aattactcaattttttggagatgtttttttgctcacgaagtcttgaatat
gaaagaacatttcaatagcatgaaattttggtttctaaagGTTTTTTATA
AGAAACAAACGACTAATTTTAATAGATCGTCACTatttgtgttctgaatg
attgtttaatggtcacgtcacgtagatatcaattataaacgtgttaaatg
cataatccaggtaggtccatcaaagtatcacttgtttaagCCAGCTTTAA
CATCCAAAgaacttttagtgcgttcagctacagcttaaccggcgtgcgac
gccgggtaccggctagtaaaATATAATTAGGGTTGTATTGAAAGCACGAT
CTACTGTATTCTACCTGACAGGGAAATTCCACTGGCATAAGGCAATCAAA
ACGGCGTTGAAAGAATCAGATGATCACGAACTTCCTTTGAAAAAGCTCCG
AAAAAAGgtaatttcttgtttttatatCCAGAGAAAAATTTCTCAGAACT
CTTAGAATAGGTTGTTATTCAACTTTCTTTCTCTTAAAGTAATTAGCTCA
TTTTGAATCAAATTAAGTCATTCTGAAGTATTTCAGAAGAGCAAATAATT
TATATTCCTAGCAAATTCTTGGATTGGTATGAATTAAATCGTGATAATAT
TTTTCAGGTAATAGCGGCATACGAAGCACATGGCACGGACCATCGAGCGA
GCGATCTACAGCAGTGTCGAACATTGTTCGAAAAGAAATTGAACACTTAT
CCAAAAGCTAAAATTATCAAAGATAAATATGTGAAATTATGTACATGATA
ATACAACAAAATGAATACTTTTTATAACAATTAAATCAAATGATACCCTT
AATGTTGTTCCTGCAGGTTGGCCCTGGATTTTAGTTGTTGAACAGAAAAA
TGATA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_038262XLOC_038262Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00060952-exon-scaffold_350-1491911889:165450..165739TCONS_00060952-exon-scaffold_350-1491911889:165450..165739Clytia hemisphaericaexon
TCONS_00060952-exon-scaffold_350-1510915933:165450..165739TCONS_00060952-exon-scaffold_350-1510915933:165450..165739Clytia hemisphaericaexon
TCONS_00060952-exon-scaffold_350-1575043694:165450..165739TCONS_00060952-exon-scaffold_350-1575043694:165450..165739Clytia hemisphaericaexon
TCONS_00060952-exon-scaffold_350-1491911889:165900..166004TCONS_00060952-exon-scaffold_350-1491911889:165900..166004Clytia hemisphaericaexon
TCONS_00060952-exon-scaffold_350-1510915933:165900..166004TCONS_00060952-exon-scaffold_350-1510915933:165900..166004Clytia hemisphaericaexon
TCONS_00060952-exon-scaffold_350-1575043694:165900..166004TCONS_00060952-exon-scaffold_350-1575043694:165900..166004Clytia hemisphaericaexon
TCONS_00060952-exon-scaffold_350-1491911889:166356..166445TCONS_00060952-exon-scaffold_350-1491911889:166356..166445Clytia hemisphaericaexon
TCONS_00060952-exon-scaffold_350-1510915933:166356..166445TCONS_00060952-exon-scaffold_350-1510915933:166356..166445Clytia hemisphaericaexon
TCONS_00060952-exon-scaffold_350-1575043694:166356..166445TCONS_00060952-exon-scaffold_350-1575043694:166356..166445Clytia hemisphaericaexon
TCONS_00060952-exon-scaffold_350-1491911889:166683..166905TCONS_00060952-exon-scaffold_350-1491911889:166683..166905Clytia hemisphaericaexon
TCONS_00060952-exon-scaffold_350-1510915933:166683..166905TCONS_00060952-exon-scaffold_350-1510915933:166683..166905Clytia hemisphaericaexon
TCONS_00060952-exon-scaffold_350-1575043694:166683..166905TCONS_00060952-exon-scaffold_350-1575043694:166683..166905Clytia hemisphaericaexon
TCONS_00060952-exon-scaffold_350-1491911889:167042..167089TCONS_00060952-exon-scaffold_350-1491911889:167042..167089Clytia hemisphaericaexon
TCONS_00060952-exon-scaffold_350-1510915933:167042..167089TCONS_00060952-exon-scaffold_350-1510915933:167042..167089Clytia hemisphaericaexon
TCONS_00060952-exon-scaffold_350-1575043694:167042..167089TCONS_00060952-exon-scaffold_350-1575043694:167042..167089Clytia hemisphaericaexon
TCONS_00060952-exon-scaffold_350-1491911889:170021..170106TCONS_00060952-exon-scaffold_350-1491911889:170021..170106Clytia hemisphaericaexon
TCONS_00060952-exon-scaffold_350-1510915933:170021..170106TCONS_00060952-exon-scaffold_350-1510915933:170021..170106Clytia hemisphaericaexon
TCONS_00060952-exon-scaffold_350-1575043694:170021..170106TCONS_00060952-exon-scaffold_350-1575043694:170021..170106Clytia hemisphaericaexon
TCONS_00060952-exon-scaffold_350-1491911889:170307..170554TCONS_00060952-exon-scaffold_350-1491911889:170307..170554Clytia hemisphaericaexon
TCONS_00060952-exon-scaffold_350-1510915933:170307..170554TCONS_00060952-exon-scaffold_350-1510915933:170307..170554Clytia hemisphaericaexon
TCONS_00060952-exon-scaffold_350-1575043694:170307..170554TCONS_00060952-exon-scaffold_350-1575043694:170307..170554Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_350supercontigscaffold_350:165450..170554 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
28.1263	32.3818	25.5402	17.8434	52.8384	45.89	51.6178	59.167	31.7256	22.1682	30.0931	32.4598	28.783	29.0257	22.2664	19.4306	23.7986	28.7078	14.0634	8.89613	16.7473	20.7966	24.6739	19.1254	62.6057	63.3214	7.36348	12.5665	18.077	16.8889
Blast
[Close]
BLAST of TCONS_00060952 vs. Swiss-Prot (Human)
Match: LYAR (Cell growth-regulating nucleolar protein OS=Homo sapiens GN=LYAR PE=1 SV=2)

HSP 1 Score: 144.821 bits (364), Expect = 4.895e-39
Identity = 73/143 (51.05%), Postives = 98/143 (68.53%), Query Frame = 3 
Query:   45 MVSFICDACGNTVKKNQVEKHYQTACRNCSVLSCIDCGVDFPGDAYASHTSCISEAEKYQGHLYQPKDKENKGEAKQKQWTQQLQG--ASSNVKDPKLRSLLEKLSEYSNIPRKRKKFENFCKNSVKVYDTKTLDALWDAFNE 467
            MV F C+ACG +VKK QVEKH  + CRNC  LSCIDCG DF GD Y +H  CISE +KY G  Y+   K +KG+ KQ+ W Q++       NV  PK+R LLE++S + N+PRK+ KF+N+ KNS+KV++   LD +W+ F+E
Sbjct:    1 MVFFTCNACGESVKKIQVEKHV-SVCRNCECLSCIDCGKDFWGDDYKNHVKCISEDQKYGGKGYE--GKTHKGDIKQQAWIQKISELIKRPNV-SPKVRELLEQISAFDNVPRKKAKFQNWMKNSLKVHNESILDQVWNIFSE 139
The following BLAST results are available for this feature:
BLAST of TCONS_00060952 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
LYAR4.895e-3951.05Cell growth-regulating nucleolar protein OS=Homo s... [more]
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