Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00061071 ID=TCONS_00061071|Name=TCONS_00061071|organism=Clytia hemisphaerica|type=transcript|length=1796bpRun BLAST on NCBI protein sequence of TCONS_00061071-protein >TCONS_00061071-protein ID=TCONS_00061071-protein|Name=TCONS_00061071-protein|organism=Clytia hemisphaerica|type=polypeptide|length=315bp MTRAILVTGGTGLVGKGIEIVSKQENPDDDKFIFLSSKDGDLRVLSEVESRun BLAST on NCBI transcript from alignment at scaffold_354:522788..552632+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00061071 ID=TCONS_00061071|Name=TCONS_00061071|organism=Clytia hemisphaerica|type=transcript|length=29845bp|location=Sequence derived from alignment at scaffold_354:522788..552632+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_354:522788..552632+ >TCONS_00061071 ID=TCONS_00061071|Name=TCONS_00061071|organism=Clytia hemisphaerica|type=CDS|length=9480bp|location=Sequence derived from alignment at scaffold_354:522788..552632+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2 Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00061071 vs. Swiss-Prot (Human)
Match: FCL (GDP-L-fucose synthase OS=Homo sapiens GN=TSTA3 PE=1 SV=1) HSP 1 Score: 418.313 bits (1074), Expect = 7.545e-142 Identity = 189/289 (65.40%), Postives = 234/289 (80.97%), Query Frame = 1 Query: 280 PDDDKFIFLSSKDGDLRVLSEVESIFEKHKPTHVIHLAALVGGLFRNLRENLQFFRQNMEINDNVLACCHKYKVEKCVSCLSTCIFPDKTSYPIDETMVHNGPPHDSNFGYSYAKRMIDVLNKGYNDQYGCKFTSVIPCNIFGPHDNFNIEDGHVLPGIIHKIYKAKEEQKPLTIWGTGKPLRQFIYSLDLAKLFLIVLRDYEDSSPIILSVDESDEVSIKQAAEMIVQAMDFKYGLEYDTTRSDGQYKKTASNAKLRKLWPDYKFTPMKEAIDQTCKWFMKNYDTARK 1146 P +D ++F+SSKD DL ++ ++FEK +PTHVIHLAA+VGGLFRN++ NL F+R+N+ +NDNVL + K VSCLSTCIFPDKT+YPIDETM+HNGPPH+SNFGYSYAKRMIDV N+ Y QYGC FT+VIP N+FGPHDNFNIEDGHVLPG+IHK++ AK LT+WGTG P RQFIYSLDLA+LF+ VLR+Y + PIILSV E DEVSIK+AAE +V+AMDF + +DTT+SDGQ+KKTASN+KLR PD++FTP K+A+ +TC WF NY+ ARK Sbjct: 34 PGED-WVFVSSKDADLTDTAQTRALFEKVQPTHVIHLAAMVGGLFRNIKYNLDFWRKNVHMNDNVLHSAFEVGARKVVSCLSTCIFPDKTTYPIDETMIHNGPPHNSNFGYSYAKRMIDVQNRAYFQQYGCTFTAVIPTNVFGPHDNFNIEDGHVLPGLIHKVHLAKSSGSALTVWGTGNPRRQFIYSLDLAQLFIWVLREYNEVEPIILSVGEEDEVSIKEAAEAVVEAMDFHGEVTFDTTKSDGQFKKTASNSKLRTYLPDFRFTPFKQAVKETCAWFTDNYEQARK 321 The following BLAST results are available for this feature:
BLAST of TCONS_00061071 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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