TCONS_00061382 (transcript) - C. hemisphaerica

Overview
NameTCONS_00061382
Unique NameTCONS_00061382
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length648

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00061382 ID=TCONS_00061382|Name=TCONS_00061382|organism=Clytia hemisphaerica|type=transcript|length=648bp
GAGGTATGATACCAGATGATACAAAAAGgaactttatttattttgttttt
gccaGTTTATACTACATAGAAAGGCAGGGAAATAAAGGCTGATTTGGTAA
TTCTGACAACAAGATCTTCacatttttctagatttttaaaaatcactttt
tttatatatttagtGCTACCTACTATTCACAATTACTTGataaaatttat
aattgaatTAAAATATATATGATATTTTGTGCAATTACCAAAAACACAAG
CATATCCACATCAAATGTCAATGTCATCAAATTCACCTCTGGGTGAAAGC
ATACATAACGCTAATGAAGCACTTTCATTATGTTTATCCAACAAATTCAA
CCAAGCCAAAGACTTTATCGAACCCAAaaATGGAGATCTGATGTATCATG
CTATCTCAAAAGGGACTATATCATATCTTCAAGCTGTATTGACTTATGAG
CCTgaattGATTGCTTTAGCATATGAGAAAGTCAAAGACGCTTCAATTTT
GTGTGATAAgtatCGCAAGAAGTATTCATGGGGAGAGACGATTCAGAGTT
TTGTATCAAAACAGTCATACAACGATTTTACAGAGGaGGAGCTTCATGCA
GAATTGTGTTATGCGGAATGTCTATTGGAATGGGCGTTGTTGACTTTN
Run BLAST on NCBI

transcript from alignment at scaffold_358:167467..171047+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00061382 ID=TCONS_00061382|Name=TCONS_00061382|organism=Clytia hemisphaerica|type=transcript|length=3581bp|location=Sequence derived from alignment at scaffold_358:167467..171047+ (Clytia hemisphaerica)
GAGGTATGATACCAGATGATACAAAAAGgaactttatttattttgttttt
gccaGTTTATACTACATAGAAAGGCAGGGAAATAAAGGCTGATTTGGTAA
TTCTGACAACAAGATCTTCacatttttctagatttttaaaaatcactttt
tttatatatttagtGCTACCTACTATTCACAATTACTTGataaaatttat
aattgaatTAAAATATATATGATATTTTGTGCAATTACCAAAAACACAAG
CATATCCACATCAAATGTCAATGTCATCAAATTCACCTCTGGGTGAAAGC
ATACATAACGCTAATGAAGCACTTTCATTATGTTTATCCAACAAATTCAA
CCAAGCCAAAGACTTTATCGAACCCAAGTAAGTAAAACTTTCTATCACAG
GCAGCTCACCCAATAGgcacaaacgtcttttggacgtttaatgtacgttt
ctaggacCTCCAAAGGCCTTAAAGCTGTCCATTGAATGTCCATGAGACGT
TACATGTCCATAAGGCAGCAAGCTCTCTGCCTTGATTTTGATCATATTTT
GACTAAAAGTCGACCAAAACTCAATGAACTTGATTTTTATAACATAGTTT
TTTTCAGGTACCTATTTATTGACTTACTCAAATATTATAATGTTTGTTGT
CTAGATTGGAGTTAAAATGCTTCCTTAATagaccttatcagagtttttga
tttttctaaaaaagcgatgcattgtgggattgtttcgagtgtattacaat
agaattccctcgaggaattcctaagagattaaTTATTAATAAATATTTCA
TCTAGGAACATTTTCCCAGCACTATAATCGAAAaccaattgaataaaaat
cattttatttcagaaaattgCCTGGTGGCACTCGATTTTTATACAACAGC
ATGTGTCGCCAAAAGAATTGGGTTTCATTGTCCCCAAAACACAACCTTAA
AGTCTATCTTAAAAGACTTACCGTTAAAGGTGGCACATGCCGTGGGTCAG
ACTATATATGAGTGCCCATTCCCTGGCCAAATTGTATTCACTTTCATAAT
AAATCTTCATTCATTACAAATTGTGATTGCTCTATTTTGTTCAATTGAAA
TTCTTATTTTTGCAATCACATAAGCTCATGGTGGTGAAAATccaattcaa
attcaattttctttttctagaaATGGAGATCTGATGTATCATGCTATCTC
AAAAGGGACTATATCATATCTTCAAGCTGTATTGACTTATGAGCCTGTAA
GtgtatattttacagaccatttTTCACGTCTTCCTTAGTTATAAGGGACA
TTAATGTAAtacaaattttgtattttccatTTTTGCTACTTCAATTATTA
GCTCTTATTCTTAATTTTGAAAAGagaattttatttgtttttttctccaa
tGATTCAAAGATCACCAAGACACCAAATATATACAACCAGTACCACCCTC
TCCTGTGGGAACTAAGTTTGCCTTAACTAATTTTAGCCAAATCTgcgatt
tttgtccaaatttgcCATAATTTAGTTCTTGCCATGTAGTTTTCCctaaa
aaaggtaaatttttggCAATAGATACCTGTTTTAACTGcgccaaaaaatt
attttcctcaGAGTTAGTTCTCTCCTTAACAAAGTATGTTAACTTTAAAA
Ctgaatatgggggtggaggatataacattttttggaaatttccccccccc
ccttccggACATCGTGACTTTTGActccccggacagcaggtctaaccccc
caGACATttaaaattaccctcaaacagagcaaaagtttatcccccggaca
aggcaaattttgtagattttacaCTACCCCCACCCAgaacactatatcct
ccaccccctcccccatgtacgaacattttctggaagagtccaATCAGTTG
ACAAATTGTAGAAAAGTTGAATggtatttcatttttcaggaattGATTGC
TTTAGCATATGAGAAAGTCAAAGACGCTTCAATTTTGTGTGATAAGTATG
ATATTATGTATACATAATAATAATGTCAGTTATTACAATATTATTTCGTA
TAAGGCAAGGCCAATTTAATCTGTTGCTTTacgctacccaaaaaagagtg
TCGGTCAGTCGGccggcaaaaaaaataaaaatgaaagtagaatttcatct
ataaaatctcctgaaagggcagcaaaaaaaattacatattgacaaaaatg
tgaaatagtaaacaaaaagacacaaaaaggtcgaattcatggataaaatg
aaaaatggaacataaaattctttgaaaaactagcaaaatgttgaaaattt
tggagtctataaaaagaaatgataataaaaatgtactaccaaaataaatt
ttattttcatttcgatTTTGGTAATCTCACGGTCAGTCAGACctgtaaaa
caactaatcaaattggtctctcCTAAACGTAAATATTAAATAACATTTGA
TTGGTCAAATACAACGGTGCTGTGCTCAgtgaaaaagtgaagaaaaaaaa
ctcttacaTTATAAtttgataataataaaaaagtgaagtcatactttgtt
tataaattttaaaataattttaaaataataagaCGTGATatcaaaaaatg
tatttttctgttgtttttttctttcaggtatCGCAAGAAGTATTCATGGG
GAGAGACGATTCAGAGTTTTGTATCAAAACAGTCATACAACGATTTTACA
GAGGGTAATCAATTTTATATAACCTGAAATCAGATTGTGATTATTTTCTG
CTCATCACTGTAAAGCTCTGAAAGGGACGTGTGAAAACAACCCATTTcac
ttgtttataaaaaaaagacatgTGTGCAATATTAAATTTGTAAGGACAGC
ACTCGTCTAATAGGACTGGGAAAGACAACAAAGTCGCATGATAAAAATAG
GGCGCTGTATCAgaggaaaaaattttgacattgAGGCACGTAAACCGATT
ATTGTTATGAAACTGGCTAATTTCCTCAGATagttaattttcaagcgcct
tcataGGTTTACTGTGTGCCTAAAAATTATTAAGaccatctgttatcagg
ttatcaaattataaattgtttttcttcctAAATTAAAGTTTGTTATATAT
GGCCTGGTTTTCAAGTTTATTGGTGTAACCTTTATTCTTGAATAACCTTT
AGCAACATTTAAATTTACCTTTTAACTAAATTGATTGATCTTGCTGAATA
TTTTCAACTCAAAGTTCAGACGCAGaagtgttttcattttatttggataa
aatcatcaatttcatttcaatttttacgGATGATGGTGATCGgaagacac
cgaaacgtctaaaaatttttaaattttatccaaataaaatgaaaacgctt
ctgTGCTTGAACTTCACGTTGAAAAATTTACCTTTCttttttccaatgaa
aaagaGTAGATCCCCAAAAGGTACTGAAGAAAATTCACTAGTAGTAGATA
TTCGCATACCACGTATTTCACTATTATTTTTTACTCTTCTTCTCTTAcat
acaatttttttgtttatagaGGAGCTTCATGCAGAATTGTGTTATGCGGA
ATGTCTATTGGAATGGGCGTTGTTGACTTTN
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_038516XLOC_038516Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00061382-exon-scaffold_358-1491911889:167467..167843TCONS_00061382-exon-scaffold_358-1491911889:167467..167843Clytia hemisphaericaexon
TCONS_00061382-exon-scaffold_358-1510915933:167467..167843TCONS_00061382-exon-scaffold_358-1510915933:167467..167843Clytia hemisphaericaexon
TCONS_00061382-exon-scaffold_358-1575043694:167467..167843TCONS_00061382-exon-scaffold_358-1575043694:167467..167843Clytia hemisphaericaexon
TCONS_00061382-exon-scaffold_358-1491911889:168637..168712TCONS_00061382-exon-scaffold_358-1491911889:168637..168712Clytia hemisphaericaexon
TCONS_00061382-exon-scaffold_358-1510915933:168637..168712TCONS_00061382-exon-scaffold_358-1510915933:168637..168712Clytia hemisphaericaexon
TCONS_00061382-exon-scaffold_358-1575043694:168637..168712TCONS_00061382-exon-scaffold_358-1575043694:168637..168712Clytia hemisphaericaexon
TCONS_00061382-exon-scaffold_358-1491911889:169406..169461TCONS_00061382-exon-scaffold_358-1491911889:169406..169461Clytia hemisphaericaexon
TCONS_00061382-exon-scaffold_358-1510915933:169406..169461TCONS_00061382-exon-scaffold_358-1510915933:169406..169461Clytia hemisphaericaexon
TCONS_00061382-exon-scaffold_358-1575043694:169406..169461TCONS_00061382-exon-scaffold_358-1575043694:169406..169461Clytia hemisphaericaexon
TCONS_00061382-exon-scaffold_358-1491911889:170094..170170TCONS_00061382-exon-scaffold_358-1491911889:170094..170170Clytia hemisphaericaexon
TCONS_00061382-exon-scaffold_358-1510915933:170094..170170TCONS_00061382-exon-scaffold_358-1510915933:170094..170170Clytia hemisphaericaexon
TCONS_00061382-exon-scaffold_358-1575043694:170094..170170TCONS_00061382-exon-scaffold_358-1575043694:170094..170170Clytia hemisphaericaexon
TCONS_00061382-exon-scaffold_358-1491911889:170986..171047TCONS_00061382-exon-scaffold_358-1491911889:170986..171047Clytia hemisphaericaexon
TCONS_00061382-exon-scaffold_358-1510915933:170986..171047TCONS_00061382-exon-scaffold_358-1510915933:170986..171047Clytia hemisphaericaexon
TCONS_00061382-exon-scaffold_358-1575043694:170986..171047TCONS_00061382-exon-scaffold_358-1575043694:170986..171047Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_358supercontigscaffold_358:167467..171047 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0.0253183	0	0	0	0.436669	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0.400061	0.521563	0	0	0	0	0.390543	0.0481827
Blast
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BLAST of TCONS_00061382 vs. Swiss-Prot (Human)
Match: TT39A (Tetratricopeptide repeat protein 39A OS=Homo sapiens GN=TTC39A PE=2 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 2.283e-26
Identity = 50/124 (40.32%), Postives = 85/124 (68.55%), Query Frame = 1 
Query:  274 SSNSPLGESIHNANEALSLCLSNKFNQAKDFIEPKNGDLMYHAISKGTISYLQAVLTYEPELIALAYEKVKDASILCDKYRKKYSWGETIQSFVSKQSYNDFTEEELHAELCYAECLLEWALLT 645
            +  S L E++     AL L L+N+F++A  +++P+  + MYH+++  TI  +QA++T++P+ I LA   +K+A +LC ++R+K S  ++  S V++ +   FTEEE+HAE+CYAECLL+ A LT
Sbjct:   16 TPESSLHEALDQCMTALDLFLTNQFSEALSYLKPRTKESMYHSLTYATILEMQAMMTFDPQDILLAGNMMKEAQMLCQRHRRKSSVTDSFSSLVNRPTLGQFTEEEIHAEVCYAECLLQRAALT 139
The following BLAST results are available for this feature:
BLAST of TCONS_00061382 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
TT39A2.283e-2640.32Tetratricopeptide repeat protein 39A OS=Homo sapie... [more]
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