TCONS_00064341 (transcript) - C. hemisphaerica

Overview
NameTCONS_00064341
Unique NameTCONS_00064341
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1280

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00064341 ID=TCONS_00064341|Name=TCONS_00064341|organism=Clytia hemisphaerica|type=transcript|length=1280bp
ggcattattAACTTAAGGAAcgagaaaatttgttcgagttatagaggttc
gagttaaagagactttatttcatttttggttttattttcagAGTGTATTC
AAGACGTACCGACCGAAAGTTGAGCAAGGCGAAGATCTCGGTATCGAAGA
GGATGAGGATTCTGACAAAGAAAGTGTATCAAGCCAACCAATCAAATCAT
CAAGCAGCAGTAAGggtaaagaaaagaagaaaaagaagagccGAGTGATG
CAACTACAGGATAGCGATAATGAAACGAACGATTCCATCGAATACCGATC
GGATGTTTCCGATTACGATGAGAACTCTTCAACAGTTCCTTCACCTGCTT
CGAATTCATCATCGCGTCGAAAATGAATAACATCTCCGTGGTAATTTCCT
CCTCATTGTTTTGTAAACTTGACCTCATCGCCGTcgtaaatattgaaaaa
attgtcagTGTTACATGTGACATACAATCGTGGAATTGTTATTAACGCGT
AAATAATGGATACTCCAAGCTGTATTTTTACGTTGACAATACTATATACG
AGTTAAAGTATCTCGAATAAATACTATTGCTTAAATTGACTAGGAGAAAA
ACTGTATATAATCATCTTTCGACGTACCACACCCACACTCTTCGACCAAA
TTATTATATTAATGTCACTTGAATGTCGACGAAAATCTTTatgattcatg
atattcatgacgtaatgttttcccgagttttagccagtagttttataaaa
tttgccactactggcaaaaaccggggtatttccgtagaaaacattacgtc
atgaatatcatgaattgattaTCATTTCTTTCATATAGTTTTTATGGTGT
GGTGTTTATTTAGTTATCTAGTTTTTAGTTGAATTTTAAACCATTTATAT
TAAGATCTAGTAGTTAATGTTATTTTAAAATGTTGctacttttttaaaaa
aactttaaacgcCTAACTTTAgtataattattttgaaaaatcttttgatc
attaaaaaaatttattgtctAGTTGTAATGTTATATGTATGTTTTAATGT
ATCTTAATGACCCGCACGGTTGTTAAATGTTGAATCTTTCCCTCTATGGT
GGCCTAGTTGTGTCTTACATATTTTAAATCATGTTACCTGCTGTTACAGT
ATATTTTGATCTGCCACCGAATGAAATTCACATTCTCTCTCATACGTTTT
TGTTTTCCCACTTTGTCTAACTTATACAAGGTATGTTTTAAGTTAATGTA
TCCGTCGAtttatttttagtaatttttagC
Run BLAST on NCBI

transcript from alignment at scaffold_411:107636..111831-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00064341 ID=TCONS_00064341|Name=TCONS_00064341|organism=Clytia hemisphaerica|type=transcript|length=4196bp|location=Sequence derived from alignment at scaffold_411:107636..111831- (Clytia hemisphaerica)
GGCATTATTAACTTAAGGAACGAGAAAATTTGTTCGAGTTATAGAGGTTC
GAGTTAAAGAGACTTTATTTCATTTTTGGTTTTATTTTCAGAGTGTATTC
AAGACGTACCGACCGAAAGTTGAGCAAGGCGAAGATCTCGGTATCGAAGA
GGTATGAATTTTTCATAAAACAGCATCTGAAAATAATGAAATGAAATTCA
GAAAACTTAAGTATTTTTGTTCGTTGGACCGGTTGTAAAGTGTCTTTAGT
GATAAACTTCAGCTTGTGGTGAAAAATAATTATAAAAAAAATAAATAAAA
TTGTTTTCGTGTACTCTTTGATTAAATTCTTGTAGCATTTGAGGAATACA
CTTTCTTTTATAAAAACATTCTAAATTTTCTAAGCCTTCAGATGTTGTTA
ACTTTTTGAGTTTTAAGCCTAAAAATGTTCTTAATATGTTCTTATTTTCT
CCATTTTGTGAGTATTTTTGTCCATTTTTTTAAGAAATCTGCTTTTTTAA
GGTCTGCGAAGTCTTGGAATGTTCTTAACTTGTTCTTAACATTTTGGACA
TCGAAACCTTATGCTCTTATATAGTTGGTTTTTATAAAAAACAGCTCTGC
AAAGTAGAGGCACATAACCGTACTTACATTAAGCACGCCTTCCAGTGTGA
AGAATACTTGGAAGAGAGATACACTTTTTTTAATGTTCTGAACATTCAAA
CGTTCACTTCTTTTTCTTCTGCAGGATGAGGATTCTGACAAAGAAAGTGG
TAAGAATCCTTTTTTCAATTTTTCAAAATAATCACATTTAAAATCTCTAA
CTTTAATGCTTTAACCAAAAATCCTAGTAAAATGAAAGAGATTAGTTGAA
AAACAGGCTGATTCGCGAAAAAAGGCTCCGTGTAAATGAAATTATTTTGT
AAAATCGTCTCACTGGAAATAATCCAAGGTAAATTAAGGTAGTCAGAAAG
AGAAAAAAAAATCAAAAACACTACTTATGATCTTGATATTTACTTCAAAA
GTTATCAAACCTTCTTCTCTTAGTATCAAGCCAACCAATCAAATCATCAA
GCAGCAGTAAGGGTAAAGAAAAGAAGAAAAAGAAGAGCCGAGTGATGCAA
CTACAGGATAGCGATAATGAAACGAACGATTCCATCGAATACCGATCGGT
AAGTTGAAAACTTCAGAAATTCAGTAAAGCCTTCACGGACACTCTAAAAT
ACGGACACTTATGATTAGCGGTCAATTTCACTGTCCCCCAACCATCTCCT
GGTCAAATCCTTATAGGAAAATTTCCAAAAGGCGGACATTAACCCGTTTC
TCCGACTGTGTCCGCTAATTGGAGGTTCGGATGTGCTTCGGATGAGCAAC
AAACCACATACAGTTGCTCTCTCTAATTCGATTTTCAAGGGACCAAAGAT
TTTATTCCGATTAGAGAAAGCCTCGAATTACAAAAAGATTCGAATTAGAG
AGAGTTGACTGTAAAATAAAACATATTAGAGGGACAGCCTATTTTCTTAA
GAGCGGGCTCAATCGAAACTAAAAAGCTTCAGGGTATTATATACGTTTGA
TTGGGATCTAATGCATTTCTTAAATTTTTTTGTATTCAAATGGTTTGCAG
GGGGTAACTAATCACGTGTGGTAGGGTAGGGTAACTGAGAAAAGAGTAAT
GGGAAGGAATAATAGATTAGGGGTCAAGAAAGGTGATCATAATTCAATTT
TTTGGAAATTTACCCCCGGACATTGTTACTTTTGACCCCCGGACAGCANN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNCCCCCCCCCCCGGACAAGCATTAGTTGACCACCTGGACATTC
AAGATAACCCTCAAACAGAGCAAAATTACCCCCAAACAGAGCAAGTTTAC
CTCCCCCGGACAAGGCAAATTTTGTAGATTTTTCACTACCCCCGGACACT
ATACCCTCCGACCCCTATGTACGAACATTTTCTGGAAGAGCCCAATAAGA
CATATGAATTAGCTTAAGCCTATTTTGCATTAGTTGTACCATAGTATAAA
TAGCCTCGGCTGGAGTATATACTGCATTGTCTTTTCAGTTAATTGCTGTT
CTATCTTTGTCTCCGAGCTTTATAAGAACATCAAGATTGTCAGTTTATTA
TTGGTAGATAATTCTTGAAATTTTTCTCTTATTTTCCTTCACAAAAAGTT
TTTTTATTGCTAGATATCTTTGAATCTGTACCCAATAGAACACTTGAACT
GATTTTGGACATATTTTAGGGGTATTTTGTGGAAACGATAATTTTTTCTC
CAAAATTTAAATTATAAGAACTATATTCAAGATGACAACTTTCCTGTCCG
TTTGAGTGCTAAATTTTGAAGGTGCTGGCTTGAAATTTTCACAGAATTAT
CTTGATGTACTATTTCATTGATTTCTAAAAAGATTTCTCTGAAATATTGT
GAAGCATTTCGAGGCACTTTATTAATTTTTGAGTTCTTTCAGCACAGCCA
TTTTGTGCTTGTTTAAATTTCTTTTTGTTAATCTTTTCTGCACGATGATT
TTATAATGCAAGTGTATTATCAAGGGCATATCATTAATGTCTAAAACGCA
CTGAGAAGTAAGTATTAACGACAAACCAATGAAATTTACCATTAAAGATG
CTACATTACTTATTTCTTGATCAACAAATAGTCATCAAATACGACAGAGA
TAGAACAACAGAAATTCGGATGTTATCATTCCAGCCGCGGCTTTCTTATA
CTATGGTTGTACATTGGTAGCAAGAATTCAGTCAGATACATATTAATTTC
TTCTATAAACTTTTCAGGATGTTTCCGATTACGATGAGAACTCTTCAACA
GTTCCTTCACCTGCTTCGAATTCATCATCGCGTCGAAAATGAATAACATC
TCCGTGGTAATTTCCTCCTCATTGTTTTGTAAACTTGACCTCATCGCCGT
CGTAAATATTGAAAAAATTGTCAGTGTTACATGTGACATACAATCGTGGA
ATTGTTATTAACGCGTAAATAATGGATACTCCAAGCTGTATTTTTACGTT
GACAATACTATATACGAGTTAAAGTATCTCGAATAAATACTATTGCTTAA
ATTGACTAGGAGAAAAACTGTATATAATCATCTTTCGACGTACCACACCC
ACACTCTTCGACCAAATTATTATATTAATGTCACTTGAATGTCGACGAAA
ATCTTTATGATTCATGATATTCATGACGTAATGTTTTCCCGAGTTTTAGC
CAGTAGTTTTATAAAATTTGCCACTACTGGCAAAAACCGGGGTATTTCCG
TAGAAAACATTACGTCATGAATATCATGAATTGATTATCATTTCTTTCAT
ATAGTTTTTATGGTGTGGTGTTTATTTAGTTATCTAGTTTTTAGTTGAAT
TTTAAACCATTTATATTAAGATCTAGTAGTTAATGTTATTTTAAAATGTT
GCTACTTTTTTAAAAAAACTTTAAACGCCTAACTTTAGTATAATTATTTT
GAAAAATCTTTTGATCATTAAAAAAATTTATTGTCTAGTTGTAATGTTAT
ATGTATGTTTTAATGTATCTTAATGACCCGCACGGTTGTTAAATGTTGAA
TCTTTCCCTCTATGGTGGCCTAGTTGTGTCTTACATATTTTAAATCATGT
TACCTGCTGTTACAGTATATTTTGATCTGCCACCGAATGAAATTCACATT
CTCTCTCATACGTTTTTGTTTTCCCACTTTGTCTAACTTATACAAGGTAT
GTTTTAAGTTAATGTATCCGTCGATTTATTTTTAGTAATTTTTAGC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_040342XLOC_040342Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00064341-exon-scaffold_411-1575043694:111681..111831TCONS_00064341-exon-scaffold_411-1575043694:111681..111831Clytia hemisphaericaexon
TCONS_00064341-exon-scaffold_411-1575043694:111083..111107TCONS_00064341-exon-scaffold_411-1575043694:111083..111107Clytia hemisphaericaexon
TCONS_00064341-exon-scaffold_411-1575043694:110684..110808TCONS_00064341-exon-scaffold_411-1575043694:110684..110808Clytia hemisphaericaexon
TCONS_00064341-exon-scaffold_411-1575043694:107636..108614TCONS_00064341-exon-scaffold_411-1575043694:107636..108614Clytia hemisphaericaexon
TCONS_00064341-exon-scaffold_411-1510915933:111681..111831TCONS_00064341-exon-scaffold_411-1510915933:111681..111831Clytia hemisphaericaexon
TCONS_00064341-exon-scaffold_411-1510915933:111083..111107TCONS_00064341-exon-scaffold_411-1510915933:111083..111107Clytia hemisphaericaexon
TCONS_00064341-exon-scaffold_411-1510915933:110684..110808TCONS_00064341-exon-scaffold_411-1510915933:110684..110808Clytia hemisphaericaexon
TCONS_00064341-exon-scaffold_411-1510915933:107636..108614TCONS_00064341-exon-scaffold_411-1510915933:107636..108614Clytia hemisphaericaexon
TCONS_00064341-exon-scaffold_411-1491911889:111681..111831TCONS_00064341-exon-scaffold_411-1491911889:111681..111831Clytia hemisphaericaexon
TCONS_00064341-exon-scaffold_411-1491911889:111083..111107TCONS_00064341-exon-scaffold_411-1491911889:111083..111107Clytia hemisphaericaexon
TCONS_00064341-exon-scaffold_411-1491911889:110684..110808TCONS_00064341-exon-scaffold_411-1491911889:110684..110808Clytia hemisphaericaexon
TCONS_00064341-exon-scaffold_411-1491911889:107636..108614TCONS_00064341-exon-scaffold_411-1491911889:107636..108614Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_411supercontigscaffold_411:107636..111831 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
8.29132	6.96618	23.1787	27.819	70.4521	55.9846	41.7767	51.2283	18.6216	23.4297	23.1485	13.8241	14.0224	18.1697	15.9934	19.6986	20.4961	22.2046	8.33329	12.0645	17.6879	18.9071	15.5134	14.82	22.8607	25.7821	13.5989	11.3856	11.4679	10.6503
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00064341 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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