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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00061529 ID=TCONS_00061529|Name=TCONS_00061529|organism=Clytia hemisphaerica|type=transcript|length=2960bp
tgtTTACGATTAAACAGAACTTTGTTATTGATTCAAGATTTTAAGTTTTG
AGTGGAGAATTTGTTTTCAATAGTTGTAAAAGCATGGGTTTATATCAATT
TGAACTGGTTAATTTTGACTGAACTTTGAATGGAATAAAATTTGCGCTAA
AAAACATTACATAATGTTTTCTGAGTTATATCGGCAgcaaatgaaacaaa
atttatTCTTCGGCTCACCTGGAAACACAATATGTCAAAAGTCGAAATAT
GTAACGATGCCAGGGCGTGAAGCACCAAAATCAACGAGCAGTACAAATTC
TTCAACGAACGGTGTCATCAATAATTACCCACCATGCAACCGTGCTTTCG
CTTTGCGTATGATGAACCCGACGTCTTATTCGGATGAACGCATCAGTCCG
CTCGATAAAGAAATTCAACCGCTCGCTGGAAAGAAATTTGTAGCAAAACA
AGTATTTTCATCAGgcATTTATCAACAAAACTCAACTGACGTACTAAGCG
TAGACGAAATTAGCCTATCGCCCGCATCAAGTTGCGCGTCTCTGAGTGAA
CTCGACTTATACGATATAGACGAGAACCGCAATACATCTATATCCTCCAC
AGACAGTGGTAAAATGTTTCCAAGGCAACGATCATCGCTTGAAACTCaca
atatgaaaaatttaaaaccaacCAAAAGTTCATCAAGCTCCAACGAAGGA
GAGTATGGAATGCGGAGATCCTACTCCTCCGCAGGTGGTTTTGATGGAGG
ATTTTTCCAACGTGGTCACGGCAATCGGTCATCGACACCGTCACGTGCCA
GACCTAAAAGTAAGAATGGTTTCAAAGAAGAAGCATCAACTTACCTACAA
ACACACCAATCCTCAAGCTCCCCGAAAGGTGCACGTCTTGGAAACACACC
CGGAGTAAGGCGCACGCAAAGTTTAAAAGGTGGTCGTCCAAACGTTTCAG
TGAACCCAATTGGTCGAACAAAATCAACAGTAGGAACGCCACAGAAATCA
CCAAATTCAAAAATAAGAGTTGTTAGTACCAAAAGCTCACAACTACGCGC
GCAGTCAGCAGAAACGAAACAAACACCTGGCGCCACAAAAGCCGCCACCA
GCTCTCCAACGAATCAAAGATCAGCCAAATCAACTGTCAATCAACGAGGA
CGGACGACATCTAGAAGTCATAAAACCCGATCTTTGAATTCAACTGAAGA
ATATTCCGAGTCGGATTCATCGGTTTTCAGTGAAGTTTCCGATTCGTATT
ACCCGAGACGTAGTCGGCAAGGATCGGTGAAATTAAACGGGCACTCAAGC
CCGAGCACCCGTCGCGTACAGGCTAACCGTGGAAGCCCATCATCTTCGTT
GGCAGCTACTTCTAAAAACTTTCTGATAAATGACAGTCTACAAATCAAAA
GACTACCGAAAGTTGATNAAAACTTTCTGATAAATGACAGTCTACAAATG
AAAAGACTACCGAAAGTTGATACATTCAGTGGTAAGCTGACAGATGTTTG
TCGTCTCATCTCTGAAAGATATCCTGGGGATTTTCAAATTCTTGAAACAC
TCACAGAGATGCAGTCAGCCTACGAGGAACGTAACCATTTAGTTACGGAA
ACTATTTCAGGACTAAGAGAGAAAACGCGCCTCTTGGAACATAAGTGCGC
CAATTCTCCAAATATTCCAGGCCTTGTTATACCCTTAATGCGTGCCACAA
ACGCATTCCAATCACAACTGCAATGCATTATGGATGCTTATCATCAACCC
GGAATTGACGAAACAACCCAGTTTCCCGAATCGGGGAATATTATCCGGAA
ATCGGAACCAAATGCTCAGGATACCGTCCATAACGGCTCTTTAGATCAAA
TCTCTAAAGAAGCCAACCTTGTCGCTAGCCGAATTGAAAAGCTCGGAGGG
ATTGGCTCTAGTTCCCAGTCTCCGGTTGCTAGTGGTTACCATGGACCAAA
ACAAGAGACTTTACACGAAGATCATATTTTGGAGACATCTGGAGGAAGCT
CAGATAAAGAAAACCACTGTGATGGAGCTCCTAAAGAGAATGGTGACGTA
GGAGGTCTTTGTAATGGATATGAACGAGAACACTCCTCCTTGGAATCTTA
CGCAATTATCAATGAAGCTCCAAGTGCAGTGACATATATTTGAAACATAA
GTTCCCTAGAGACATGACTAGAAGCTCGATACAGTCAAGGATTTTTATAT
ACAGTCGCTTTGCAAAAGATTCCACTTCCGAGACTAAGATTCTCCTGTGA
CTCTTCTATCGCAAAAAGACCAGGACtccgggtagttgaaaaattgagct
tcggaaagttaggcagttttGTAAACAAatacaagattttccgtaccaTA
CCTTAAACCATTTCCAATCTCGTACCGGTTATCCCGGGGAATCTTGGAAA
GTTAGGAGAACCTTAGTGCGGAAAGTGGCATCTTATGCGGGGCGACGGTG
AACACGGCGAGAAAtccatttttgagaaattcggCCTGGATTTTGTACCG
AGATTTTCTAGCTGGCCAATAATGTAATTTAAACGTCAGTCTACAACCCT
TAACGTCAAAAAagcgttagatggacgttgaagcAGTGATATGAGTTGGT
Cgtatgttttgtttatatgaaaatggatttcaaatattttaagaaaacga
ttttaaaataattttacttgGAGATAAACTTTTAATATATACCGTAATAA
AAGATATATAGTATATATTTCGCTCTATAGAAAGAATCTTTTGTAGATGT
ATAAATTCCTATCAGATCCGGATAGAAAGGAATtttcatcagaaaaatgc
agttttctcaaaattgatttttgtccAAATCGTTTTGCCTTgaaagtttc
tttcttttttaaagatgcAAAGGTTTTGTGATAGTTTATACATTTTTGTC
GATATATTGTATGTAAGTataagaaagtttttaaaaatattgaatacaGA
ATCAAATTGG Run BLAST on NCBI transcript from alignment at scaffold_359:181062..185602+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00061529 ID=TCONS_00061529|Name=TCONS_00061529|organism=Clytia hemisphaerica|type=transcript|length=4541bp|location=Sequence derived from alignment at scaffold_359:181062..185602+ (Clytia hemisphaerica)
tgtTTACGATTAAACAGAACTTTGTTATTGATTCAAGATTTTAAGTTTTG
AGTGGAGAATTTGTTTTCAATAGTTGTAAAAGCATGGGTTTATATCAATT
TGAACTGGTTAATTTTGACTGAACTTTGAATGGAATAAAATTTGCGCTAA
AAAACATTACATAATGTTTTCTGAGTTATATCGGCAgcaaatgaaacaaa
atttatTCTTCGGCTCACCTGGAAACACAATATGTCAAAAGTCGAAATAT
GTAACGTGAGTTTTCTCTTTGGTGATTTCTATTTGAAAGTCTTGTAAAAT
AATAGTTTACATATTTCAAGTTTTGAAGAGAATTTCGGGTCAAATTAAGT
CAATGATGATTTGTACGGATGAACTAATCGCAACCGCATCTTCGTCACAt
aatttcttcttttctgtGGTATTGGTCATAATAGCCCAGGTTAAGATACT
TTTACTATGTGATTCACAGCATCGAATGTGGATTGAAGCCCAAGCATCTG
AGATTGATCTATTACACTACTGTGCTCTTTGTTTTACGTAGCAACCctta
tggaaaatatttttaaaaggcCATTTGACCATAtctttttttaatgatat
gcaTTTGATTTACATCATTGGGTGTGATTTCTGTCTATAAAAAAGGGAAT
CTTTAATCTTTTTAAGGAAAGAGAAAGTGAATCATTCTAGCATGTGTGGC
ACCAAATGTCACAACTAAGAAATCAGGAAAACTACTAGGTTATAAATCAC
CCAAAAGTGGTTTTTCAAACCTGTATCAAATTCAATGTTTTCACCTATTA
TTCAATAAAGCAAAATCTGAAAACGCCCTGAAAGTactcattttattttt
tgttattatgtAGGATGCCAGGGCGTGAAGCACCAAAATCAACGAGCAGT
ACGAATTCTTCAACGAACGNattttattttttgttattatgtAGGATGCC
AGGGCGTGAAGCACCAAAATCAACGAGCAGTACAAATTCTTCAACGAACG
GTGTCATCAATAATTACCCACCATGCAACCGTGCTTTCGCTTTGCGTATG
ATGAACCCGACGTCTTATTCGGATGAACGCATCAGTCCGCTCGATAAAGA
AATTCAACCGCTCGCTGGAAAGAAATTTGTAGCAAAACAAGTATTTTCAT
CAGGTAAGattcttaatattttctttcatattttaCAGTTgatactctct
aattcgatacgctccattattcgataatattgaaagtcacagACGAcagt
agactagcaagcgtctgtctttccttggacacaggaacgcggggaTAGTG
CTTATagttataataaagagttcttataaaaaatagaaattgccgcggga
gagtggattggaaattgtattcagtgaacatataaaaaaaacagatccca
ttgaaagtttaatctgcagcgaaatacaacgacgtggtttactagtctaa
gaCGACAGACGACAACAATCTCTCATAAACGACTACTATTCGATATGCTC
CCTTATTAAACCCcattcccttgaaaatcgaaatagAGAGAGTCAATTCT
ATATGTATTACGTGTATTGCAATCAAATATTTGAGACCCATCTATTTGGA
TATATTAGCGGTTTCCAAGGAGAGTCTTGCCGTTGCTGAACGAATTTAAC
GTTGCTAAGATGAGTTTGAAGTGTCTTAATTAATTTATGCACGTTTCTTG
CAATGACTGATTGATTTATCTCAACTGTAGATTTTTAGTTTTAGAAGATT
TGcattctttttagtttttttagtttttgatttCGTTGAAACATTCAACA
TACTACAAATCTCTTATACTACACATTGCACCTTTCatgtaaacactttt
ttcaatattggaaaaagtttttactttgaaattatttgaatCAAGCAATG
GGTAATCCAGTCGGAGTCCGTCAAAAACATTCATCTAACGCTTGAGATTC
AAATGGACCTTTTTAATGGACCGTAAAACGATGTTTTTTCCAACTGGCGT
GACATGAATTACTCTATTTTCACTtagtattttcttctttttcaggcATT
TATCAACAAAACTCAACTGACGTACTAAGCGTAGACGAAATTAGCCTATC
GCCCGCATCAAGTTGCGCGTCTCTGAGTGAACTCGACTTATACGATATAG
ACGAGAACCGCAATACATCTATATCCTCCACAGACAGTGGTAAAATGTTT
CCAAGGCAACGATCATCGCTTGAAACTCacaatatgaaaaatttaaaacc
aacCAAAAGTTCATCAAGCTCCAACGAAGGAGAGTATGGAATGCGGAGAT
CCTACTCCTCCGCAGGTGGTTTTGATGGAGGATTTTTCCAACGTGGTCAC
GGCAATCGGTCATCGACACCGTCACGTGCCAGACCTAAAAGTAAGAATGG
TTTCAAAGAAGAAGCATCAACTTACCTACAAACACACCAATCCTCAAGCT
CCCCGAAAGGTGCACGTCTTGGAAACACACCCGGAGTAAGGCGCACGCAA
AGTTTAAAAGGTGGTCGTCCAAACGTTTCAGTGAACCCAATTGGTCGAAC
AAAATCAACAGTAGGAACGCCACAGAAATCACCAAATTCAAAAATAAGAG
TTGTTAGTACCAAAAGCTCACAACTACGCGCGCAGTCAGCAGAAACGAAA
CAAACACCTGGCGCCACAAAAGCCGCCACCAGCTCTCCAACGAATCAAAG
ATCAGCCAAATCAACTGTCAATCAACGAGGACGGACGACATCTAGAAGTC
ATAAAACCCGATCTTTGAATTCAACTGAAGAATATTCCGAGTCGGATTCA
TCGGTTTTCAGTGAAGTTTCCGATTCGTATTACCCGAGACGTAGTCGGCA
AGGATCGGTGAAATTAAACGGGCACTCAAGCCCGAGCACCCGTCGCGTAC
AGGCTAACCGTGGAAGCCCATCATCTTCGTTGGCAGCTACTTCTAAAAAC
TTTCTGATAAATGACAGTCTACAAATCAAAAGACTACCGAAAGTTGATNA
AAACTTTCTGATAAATGACAGTCTACAAATGAAAAGACTACCGAAAGTTG
ATACATTCAGTGGTAAGCTGACAGATGTTTGTCGTCTCATCTCTGAAAGA
TATCCTGGGGATTTTCAAATTCTTGAAACACTCACAGAGATGCAGTCAGC
CTACGAGGAACGTAACCATTTAGTTACGGAAACTATTTCAGGACTAAGAG
AGAAAACGCGCCTCTTGGAACATAAGTGCGCCAATTCTCCAAATATTCCA
GGCCTTGTTATACCCTTAATGCGTGCCACAAACGCATTCCAATCACAACT
GCAATGCATTATGGATGCTTATCATCAACCCGGAATTGACGAAACAACCC
AGTTTCCCGAATCGGGGAATATTATCCGGAAATCGGAACCAAATGCTCAG
GATACCGTCCATAACGGCTCTTTAGATCAAATCTCTAAAGAAGCCAACCT
TGTCGCTAGCCGAATTGAAAAGCTCGGAGGGATTGGCTCTAGTTCCCAGT
CTCCGGTTGCTAGTGGTTACCATGGACCAAAACAAGAGACTTTACACGAA
GATCATATTTTGGAGACATCTGGAGGAAGCTCAGATAAAGAAAACCACTG
TGATGGAGCTCCTAAAGAGAATGGTGACGTAGGAGGTCTTTGTAATGGAT
ATGAACGAGAACACTCCTCCTTGGAATCTTACGCAATTATCAATGAAGCT
CCAAGTGCAGTGACATATATTTGAAACATAAGTTCCCTAGAGACATGACT
AGAAGCTCGATACAGTCAAGGATTTTTATATACAGTCGCTTTGCAAAAGA
TTCCACTTCCGAGACTAAGATTCTCCTGTGACTCTTCTATCGCAAAAAGA
CCAGGACtccgggtagttgaaaaattgagcttcggaaagttaggcagttt
tGTAAACAAatacaagattttccgtaccaTACCTTAAACCATTTCCAATC
TCGTACCGGTTATCCCGGGGAATCTTGGAAAGTTAGGAGAACCTTAGTGC
GGAAAGTGGCATCTTATGCGGGGCGACGGTGAACACGGCGAGAAAtccat
ttttgagaaattcggCCTGGATTTTGTACCGAGATTTTCTAGCTGGCCAA
TAATGTAATTTAAACGTCAGTCTACAACCCTTAACGTCAAAAAagcgtta
gatggacgttgaagcAGTGATATGAGTTGGTCgtatgttttgtttatatg
aaaatggatttcaaatattttaagaaaacgattttaaaataattttactt
gGAGATAAACTTTTAATATATACCGTAATAAAAGATATATAGTATATATT
TCGCTCTATAGAAAGAATCTTTTGTAGATGTATAAATTCCTATCAGATCC
GGATAGAAAGGAATtttcatcagaaaaatgcagttttctcaaaattgatt
tttgtccAAATCGTTTTGCCTTgaaagtttctttcttttttaaagatgcA
AAGGTTTTGTGATAGTTTATACATTTTTGTCGATATATTGTATGTAAGTa
taagaaagtttttaaaaatattgaatacaGAATCAAATTGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00061529-exon-scaffold_359-1491911889:181062..181316 | TCONS_00061529-exon-scaffold_359-1491911889:181062..181316 | Clytia hemisphaerica | exon |
| TCONS_00061529-exon-scaffold_359-1510915933:181062..181316 | TCONS_00061529-exon-scaffold_359-1510915933:181062..181316 | Clytia hemisphaerica | exon |
| TCONS_00061529-exon-scaffold_359-1575043694:181062..181316 | TCONS_00061529-exon-scaffold_359-1575043694:181062..181316 | Clytia hemisphaerica | exon |
| TCONS_00061529-exon-scaffold_359-1491911889:182006..182214 | TCONS_00061529-exon-scaffold_359-1491911889:182006..182214 | Clytia hemisphaerica | exon |
| TCONS_00061529-exon-scaffold_359-1510915933:182006..182214 | TCONS_00061529-exon-scaffold_359-1510915933:182006..182214 | Clytia hemisphaerica | exon |
| TCONS_00061529-exon-scaffold_359-1575043694:182006..182214 | TCONS_00061529-exon-scaffold_359-1575043694:182006..182214 | Clytia hemisphaerica | exon |
| TCONS_00061529-exon-scaffold_359-1491911889:183107..185602 | TCONS_00061529-exon-scaffold_359-1491911889:183107..185602 | Clytia hemisphaerica | exon |
| TCONS_00061529-exon-scaffold_359-1510915933:183107..185602 | TCONS_00061529-exon-scaffold_359-1510915933:183107..185602 | Clytia hemisphaerica | exon |
| TCONS_00061529-exon-scaffold_359-1575043694:183107..185602 | TCONS_00061529-exon-scaffold_359-1575043694:183107..185602 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_359 | supercontig | scaffold_359:181062..185602 + |
Blast
The following BLAST results are available for this feature:
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