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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00061535 ID=TCONS_00061535|Name=TCONS_00061535|organism=Clytia hemisphaerica|type=transcript|length=2090bp
aagaaaaacacaattACAAACAAACAGGGAGGAACCAAAGTCGCAGAGAA
GAAGCAagcttcaaaaagaaaaaaaaagatttttcagGCTGCGTGAAACA
TCTCTGTGTGCGGTGCAAAGATTTACAAATTCGTTATAAAATTCGAGGAT
TCAGCAATTCAAAGACAACATTGAACATTGTACCACGGTAACAGTATCAA
AGCATTATCTTAAAAACAATCAGACATAAAACCTACATCAACATAGAGCA
CTGATATACCGATGCCGAGTCTCAAGCAATATTAATCTTAGCATCGAAAT
AACTACTTGCAGTACTCTCTTGGACCACGTGAAACAAAAGCTGGAAATAT
GTTTCAAACAGACGTCAAATGGGTCCTATTCtgtccaattcaactcatca
tATGTGCAATTGGCATACCGTGTAATATCATCTCTGCAATGGTTTGGTCA
CGACTTAAAAAAAAGGGACGAAGTAAAAATAAATCGGCATGCAATAATTT
CATCTTACTCTCCATTGTTGATATTGGTGTCCTCATTTTCTCTGTTGTCT
CCGATGTTGTTCCTGTCATGAATAAGAAGTTGATGAACAATGCAGCTAAA
TGGTTTGGTAAGCTCTATGTCTACTTTATCCATCCTATGCATTATTACCT
GTTGTTTACGTCTATCTTTTTGGTCACTGTTTTATCTATCGAGCGTCTTA
AATTTGTCATCAGACCATTATCCAGTCTGACCTTCTCCAAGAATTGGGCT
AGAGCATTATGGATGCTTGTTTTTGCTGTCTCATTTGTGGTCAATATACC
ATCCttctttgaatttgaaatggTAACAATCAATGGCACAACTATCGTCA
GACCGTTAAGCTACGAAAATAACGTCGCTTTTCGTGATATAGTCTTCATC
TCACATTGCATCTTCGGGCTAGCTTTACCATGGTTGGTAAGTCTAGTCTG
CAACATCCTCTTAGTCACAAAGAGTTTTAATCGTCTGAAAACAGTCTCAA
AGAATTCTGTCAACGCTGATACCGTGCATATTCTGAAGACCACAACAGCC
TTGACCTTCTCCAGCCTACTTTTGTTGTCAATTCAATGTATTAGCCGCTG
CTTCAAGATGTTTACAATGTATTCTGAAGAATCTTGGGCCCTCGTTAATA
AAATCTCAGATATCGGTCATTTAGCTATACCGTGTAATTCCGCTGTCAAT
TTCATCATGTTTTGTCTTCCTGGTTCGTTTTTCCGTAAGGAAATGTTGAC
CATgtttaaaagaagaaaagatcAAATCAATGTCAGATTTACCAGTAAAA
GCCCGGTGAAAAAGATTTGCAGCGAAGAAGGCAACTcgatggaaaaatga
aaaaaggggaaaatggaaaaataaaaacgattGTCTTGGTCAGAAGCAAA
GTAATTAAGAGTGACAAGAAAAACAATTAGTGAGATAGAACTCGCCATAT
GAATGATGAAGTAAAATATATAAACAGTTTGAATTATAACTAATTAAAGT
ATGAACGGACAATGAATGTTGGGGAAAAATTTCATAGTTGTTATATATAA
CATATCATGGAATGAAATGCAgacataaataaaataaaactatcGAGTAA
TATAGAGTAATATCAAGATCTTGATTTcacccgggggtactagggtNACA
GACAGGAATGAAATAAAACTATCGAGTAATATAGAGTAATATCAAGATCT
TGATTTcacccgggggtactagggctaGCGGACGAGGGTTATGTGCGGGC
GGGACCTCTGAAAGccgacctttagagagacttgTTTTTGCCTAATAAGT
GACCCTAAGACATTTTCACAAAACTTTCTTCAATTCTCAGAAGAATTCTC
CAAtacttttgaaagattttcttaacTATCTTAACTTTTCAGTCTTCTTT
GATtcgagtttgtgaaaaaaccgacccttggAAAGATTGGAAAGAataat
ttgaaactttctgatttttgcaaccccccggattttttatttttccctac
TTTATTGAACGATTTAGTTTGTGATCTGAGTGCGTACAAAGATACCTGAT
TTGTTAAAAGCCAAAGCttgaaaaccgttttttaggtCCC Run BLAST on NCBI transcript from alignment at scaffold_359:192089..194737- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00061535 ID=TCONS_00061535|Name=TCONS_00061535|organism=Clytia hemisphaerica|type=transcript|length=2649bp|location=Sequence derived from alignment at scaffold_359:192089..194737- (Clytia hemisphaerica)
AAGAAAAACACAATTACAAACAAACAGGGAGGAACCAAAGTCGCAGAGAA
GAAGCAAGCTTCAAAAAGAAAAAAAAAGATTTTTCAGGTGATTGCTAATT
AGATTTTCGTTGATAAAGAAGATAAAGGAAGAATCGCCTTGATATAATTT
TTCATACAGAGTAGAGAAATTTGTGTACAGTCTGCACGTGACTTTTTGAT
ACCAGCGTGACAACTCAAGGTAAGATTTTTCAAAAATATATTTTTAGATT
CTCAGATTTCGTTTTTATATTAAATTTATTCTTATCCTCGATTGAGCGTT
TTTTCATTTGCTTTACATATTAAGCCCCCTGTTGAGAAGACCTAACAACC
TCTTTAAATAAATTCAACAATTTATTATTGTCAAAAGTTTGTCTTGAAAT
TCAAATTCAAATTGAATTCAAAAACATTGAATGTGTTCAAAATGATATGG
ATACCTTGAGAATAAATAGAAAACCAATACAATTTTTGCTTTAGTATTGA
CAGCAATGCATATTGAGAATCTGAGAGAGGGATCCAGAGCTGGCACACAA
AGTCCATTTAACGGCCATAACGTTCATATAACGTTTAGTGTCAGCTGGTA
TTGACATGATCTTGTTATACGACAATCAATATATATTTACTTTTAGGCTG
CGTGAAACATCTCTGTGTGCGGTGCAAAGATTTACAAATTCGTTATAAAA
TTCGAGGATTCAGCAATTCAAAGACAACATTGAACATTGTACCACGGTAA
CAGTATCAAAGCATTATCTTAAAAACAATCAGACATAAAACCTACATCAA
CATAGAGCACTGATATACCGATGCCGAGTCTCAAGCAATATTAATCTTAG
CATCGAAATAACTACTTGCAGTACTCTCTTGGACCACGTGAAACAAAAGC
TGGAAATATGTTTCAAACAGACGTCAAATGGGTCCTATTCTGTCCAATTC
AACTCATCATATGTGCAATTGGCATACCGTGTAATATCATCTCTGCAATG
GTTTGGTCACGACTTAAAAAAAAGGGACGAAGTAAAAATAAATCGGCATG
CAATAATTTCATCTTACTCTCCATTGTTGATATTGGTGTCCTCATTTTCT
CTGTTGTCTCCGATGTTGTTCCTGTCATGAATAAGAAGTTGATGAACAAT
GCAGCTAAATGGTTTGGTAAGCTCTATGTCTACTTTATCCATCCTATGCA
TTATTACCTGTTGTTTACGTCTATCTTTTTGGTCACTGTTTTATCTATCG
AGCGTCTTAAATTTGTCATCAGACCATTATCCAGTCTGACCTTCTCCAAG
AATTGGGCTAGAGCATTATGGATGCTTGTTTTTGCTGTCTCATTTGTGGT
CAATATACCATCCTTCTTTGAATTTGAAATGGTAACAATCAATGGCACAA
CTATCGTCAGACCGTTAAGCTACGAAAATAACGTCGCTTTTCGTGATATA
GTCTTCATCTCACATTGCATCTTCGGGCTAGCTTTACCATGGTTGGTAAG
TCTAGTCTGCAACATCCTCTTAGTCACAAAGAGTTTTAATCGTCTGAAAA
CAGTCTCAAAGAATTCTGTCAACGCTGATACCGTGCATATTCTGAAGACC
ACAACAGCCTTGACCTTCTCCAGCCTACTTTTGTTGTCAATTCAATGTAT
TAGCCGCTGCTTCAAGATGTTTACAATGTATTCTGAAGAATCTTGGGCCC
TCGTTAATAAAATCTCAGATATCGGTCATTTAGCTATACCGTGTAATTCC
GCTGTCAATTTCATCATGTTTTGTCTTCCTGGTTCGTTTTTCCGTAAGGA
AATGTTGACCATGTTTAAAAGAAGAAAAGATCAAATCAATGTCAGATTTA
CCAGTAAAAGCCCGGTGAAAAAGATTTGCAGCGAAGAAGGCAACTCGATG
GAAAAATGAAAAAAGGGGAAAATGGAAAAATAAAAACGATTGTCTTGGTC
AGAAGCAAAGTAATTAAGAGTGACAAGAAAAACAATTAGTGAGATAGAAC
TCGCCATATGAATGATGAAGTAAAATATATAAACAGTTTGAATTATAACT
AATTAAAGTATGAACGGACAATGAATGTTGGGGAAAAATTTCATAGTTGT
TATATATAACATATCATGGAATGAAATGCAGACATAAATAAAATAAAACT
ATCGAGTAATATAGAGTAATATCAAGATCTTGATTTCACCCGGGGGTACT
AGGGTNACAGACAGGAATGAAATAAAACTATCGAGTAATATAGAGTAATA
TCAAGATCTTGATTTCACCCGGGGGTACTAGGGCTAGCGGACGAGGGTTA
TGTGCGGGCGGGACCTCTGAAAGCCGACCTTTAGAGAGACTTGTTTTTGC
CTAATAAGTGACCCTAAGACATTTTCACAAAACTTTCTTCAATTCTCAGA
AGAATTCTCCAATACTTTTGAAAGATTTTCTTAACTATCTTAACTTTTCA
GTCTTCTTTGATTCGAGTTTGTGAAAAAACCGACCCTTGGAAAGATTGGA
AAGAATAATTTGAAACTTTCTGATTTTTGCAACCCCCCGGATTTTTTATT
TTTCCCTACTTTATTGAACGATTTAGTTTGTGATCTGAGTGCGTACAAAG
ATACCTGATTTGTTAAAAGCCAAAGCTTGAAAACCGTTTTTTAGGTCCC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00061535-exon-scaffold_359-1575043694:194651..194737 | TCONS_00061535-exon-scaffold_359-1575043694:194651..194737 | Clytia hemisphaerica | exon |
| TCONS_00061535-exon-scaffold_359-1575043694:192089..194091 | TCONS_00061535-exon-scaffold_359-1575043694:192089..194091 | Clytia hemisphaerica | exon |
| TCONS_00061535-exon-scaffold_359-1510915933:194651..194737 | TCONS_00061535-exon-scaffold_359-1510915933:194651..194737 | Clytia hemisphaerica | exon |
| TCONS_00061535-exon-scaffold_359-1510915933:192089..194091 | TCONS_00061535-exon-scaffold_359-1510915933:192089..194091 | Clytia hemisphaerica | exon |
| TCONS_00061535-exon-scaffold_359-1491911889:194651..194737 | TCONS_00061535-exon-scaffold_359-1491911889:194651..194737 | Clytia hemisphaerica | exon |
| TCONS_00061535-exon-scaffold_359-1491911889:192089..194091 | TCONS_00061535-exon-scaffold_359-1491911889:192089..194091 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_359 | supercontig | scaffold_359:192089..194737 - |
Blast
The following BLAST results are available for this feature:
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