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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00061706 ID=TCONS_00061706|Name=TCONS_00061706|organism=Clytia hemisphaerica|type=transcript|length=1155bp
AAACCTGATAAAAAATGTAATTGGTAAATAAGTTGTAACCAAATTGGGTT
CTTTTTGGTTTTGAGAATTGAGTTTGTTGAAATACCACAGGCAAAATAAC
TTGTATTAAAAATAACTTATATTCATCATTGTTTTTGAATGGATTTTTAT
CTGGCAGATTTGTTTTTTGGAAGTTACAAAATCCATAAAGCTTTGATGTG
ATGTGATAGCTTGTTTTTACTGGCTGgtaaattatatatttttcccAGAA
GGCGGTTGGTTGGTTgttatattttcgaaaatatatttgaaatttttccg
tTTATCACTTATAACCACCTAGTCCCGTAATCGTCACGTTAATTTTAATC
TTGCTGACGAGaacaattttgtctttgtcaaaaaacattttcaacttGGT
TAGGAATAACCAAGTAACAACGATTCCTTTGCAAATTTCATATTTGCTTT
AGCAGAATTGGTTTAAAAAGCTTCGAGATCAATACATTGTTAGTGAAGTA
ATAAATAAATTGAACATCACAAATACAATAATTCAAAGattatttcattt
tacattttgattggaatttgttttgattttttcgtgatttcgaaaattta
ttttgacgtTCGATGGTTCCCGATTTTTTCGACCAATCATCTTTCTATTA
TCAATTGATAAACCAAACAAATCGTTCTTTTCGATTGTTGAACCAATCAA
ATCGTTCCATTCAAAGAAAGAACCAATTAAAAGCGAGAGTTGATCGACCA
ATTGTTCGAATCACTGACACTGACCAATcgaaaacaatttcaaaagaaca
aaagaaggcAAAGATTCAATTACCAAACAATAAAACGTACAGTAAAATTC
AAATTAATAATAAGTCAACGTCTACAATACCAAATTCAACAAGTAATTCG
AACGTTACTCGATATAAATCCGTAAGCCGCCTATCGATAGAGATACGACG
TAAATCGAGTACTCCATCGTGTGGCGGCATCCGAAAATTAAGCATCCAAT
CATCACACGATTCGAAATCtctcagccaatcagattgcttttTTGGATTA
TTTGGACCAAtcaaattaaagaatttcaagaaaTCAGCAAATCCATGGAT
CAGGTTGAAAACGTCGATGGGTGTTTGGCATTCGAAATATAAAAagtcga
aaaag Run BLAST on NCBI protein sequence of TCONS_00061706-protein >TCONS_00061706-protein ID=TCONS_00061706-protein|Name=TCONS_00061706-protein|organism=Clytia hemisphaerica|type=polypeptide|length=181bp
MVPDFFDQSSFYYQLINQTNRSFRLLNQSNRSIQRKNQLKARVDRPIVRI
TDTDQSKTISKEQKKAKIQLPNNKTYSKIQINNKSTSTIPNSTSNSNVTR
YKSVSRLSIEIRRKSSTPSCGGIRKLSIQSSHDSKSLSQSDCFFGLFGPI
KLKNFKKSANPWIRLKTSMGVWHSKYKKSKK Run BLAST on NCBI transcript from alignment at scaffold_36:113259..114413 Legend: exonCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00061706 ID=TCONS_00061706|Name=TCONS_00061706|organism=Clytia hemisphaerica|type=transcript|length=1155bp|location=Sequence derived from alignment at scaffold_36:113259..114413 (Clytia hemisphaerica)
ctttttcgactTTTTATATTTCGAATGCCAAACACCCATCGACGTTTTCA
ACCTGATCCATGGATTTGCTGAtttcttgaaattctttaatttgaTTGGT
CCAAATAATCCAAaaaagcaatctgattggctgagaGATTTCGAATCGTG
TGATGATTGGATGCTTAATTTTCGGATGCCGCCACACGATGGAGTACTCG
ATTTACGTCGTATCTCTATCGATAGGCGGCTTACGGATTTATATCGAGTA
ACGTTCGAATTACTTGTTGAATTTGGTATTGTAGACGTTGACTTATTATT
AATTTGAATTTTACTGTACGTTTTATTGTTTGGTAATTGAATCTTTgcct
tcttttgttcttttgaaattgttttcgATTGGTCAGTGTCAGTGATTCGA
ACAATTGGTCGATCAACTCTCGCTTTTAATTGGTTCTTTCTTTGAATGGA
ACGATTTGATTGGTTCAACAATCGAAAAGAACGATTTGTTTGGTTTATCA
ATTGATAATAGAAAGATGATTGGTCGAAAAAATCGGGAACCATCGAacgt
caaaataaattttcgaaatcacgaaaaaatcaaaacaaattccaatcaaa
atgtaaaatgaaataatCTTTGAATTATTGTATTTGTGATGTTCAATTTA
TTTATTACTTCACTAACAATGTATTGATCTCGAAGCTTTTTAAACCAATT
CTGCTAAAGCAAATATGAAATTTGCAAAGGAATCGTTGTTACTTGGTTAT
TCCTAACCaagttgaaaatgttttttgacaaagacaaaattgttCTCGTC
AGCAAGATTAAAATTAACGTGACGATTACGGGACTAGGTGGTTATAAGTG
ATAAacggaaaaatttcaaatatattttcgaaaatataacAACCAACCAA
CCGCCTTCTgggaaaaatatataatttacCAGCCAGTAAAAACAAGCTAT
CACATCACATCAAAGCTTTATGGATTTTGTAACTTCCAAAAAACAAATCT
GCCAGATAAAAATCCATTCAAAAACAATGATGAATATAAGTTATTTTTAA
TACAAGTTATTTTGCCTGTGGTATTTCAACAAACTCAATTCTCAAAACCA
AAAAGAACCCAATTTGGTTACAACTTATTTACCAATTACATTTTTTATCA
GGTTT Coding sequence (CDS) from alignment at scaffold_36:113259..114413 >TCONS_00061706 ID=TCONS_00061706|Name=TCONS_00061706|organism=Clytia hemisphaerica|type=CDS|length=543bp|location=Sequence derived from alignment at scaffold_36:113259..114413 (Clytia hemisphaerica)
ctttttcgactTTTTATATTTCGAATGCCAAACACCCATCGACGTTTTCA
ACCTGATCCATGGATTTGCTGAtttcttgaaattctttaatttgaTTGGT
CCAAATAATCCAAaaaagcaatctgattggctgagaGATTTCGAATCGTG
TGATGATTGGATGCTTAATTTTCGGATGCCGCCACACGATGGAGTACTCG
ATTTACGTCGTATCTCTATCGATAGGCGGCTTACGGATTTATATCGAGTA
ACGTTCGAATTACTTGTTGAATTTGGTATTGTAGACGTTGACTTATTATT
AATTTGAATTTTACTGTACGTTTTATTGTTTGGTAATTGAATCTTTgcct
tcttttgttcttttgaaattgttttcgATTGGTCAGTGTCAGTGATTCGA
ACAATTGGTCGATCAACTCTCGCTTTTAATTGGTTCTTTCTTTGAATGGA
ACGATTTGATTGGTTCAACAATCGAAAAGAACGATTTGTTTGGTTTATCA
ATTGATAATAGAAAGATGATTGGTCGAAAAAATCGGGAACCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00061706-exon-scaffold_36-1491911889:113259..114413 | TCONS_00061706-exon-scaffold_36-1491911889:113259..114413 | Clytia hemisphaerica | exon |
| TCONS_00061706-exon-scaffold_36-1510915933:113259..114413 | TCONS_00061706-exon-scaffold_36-1510915933:113259..114413 | Clytia hemisphaerica | exon |
| TCONS_00061706-exon-scaffold_36-1575043694:113259..114413 | TCONS_00061706-exon-scaffold_36-1575043694:113259..114413 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_36 | supercontig | scaffold_36:113259..114413 . |
Blast
The following BLAST results are available for this feature:
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