TCONS_00061650 (transcript) - C. hemisphaerica

Overview
NameTCONS_00061650
Unique NameTCONS_00061650
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1740

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00061650 ID=TCONS_00061650|Name=TCONS_00061650|organism=Clytia hemisphaerica|type=transcript|length=1740bp
aaattttttcttcaatcaaggcatgaaagatattttaacaaacttggaaa
attattgagatatttaactcctgaacggtcgttaataagacgtacccagt
aaaagggtatcaaaaatgaggaattcagtgaaaaaattgccaaatttggc
atttttgggggtggtatacatgCTGAATGTTGCATTTTGTCTGAAGAAAt
ttattattataattatttAGAAGAAAATTTGCCACTTTATATAAACCTTT
TCTCTTTTAGATTTTTAGCAACCTAATTTTAGAACATGGTTTATCATAAT
GGCCATAGGCTTTTTCTTCAAGCTTTTGTTTCAAAAAGACTAATCAAGGA
AAAagaagcaaaagatttgtaCATGAAAGTATGCAATATTTGTGAAGCTG
ATGGAAATCCTGATGAGTTTCTTGACTTTATCAGTTTGATAAATAAACAA
CTAGAATCGCTTTTCATGGAAATAAGAAGAGGATGTGCTGAAGATACTGG
TCACGTCTATTTTAGCTTGGTTAACAAAGCAGAGGATGAACATTCAAAGT
TAGCCACAGAATATCAAGCTCATGAAATTGAACTTATCAAATTGGCTCTG
AATTTGATTATTGAATCGCAAAATGGTTCAGTATCTTCTTTGGATCTCGT
CAATCTTGGAATGGATCTTACAAAAAGGATTCCAGCTCAAGCCTCTGAAG
AGCTGATCATGAAACTTGTTGAAGATGGTTGGTTGACAGAAaAAGATGGT
AAAGTATTCTTTGGCCCTCGAACAACAATTGAGCTTGGCCAATACTTAAG
AAACAAATACAAAGAACAAATTGGTGAATGTCCTCTATGTCATGATTTTG
TTGTTATGGGTGATATATGTGAAGAGTGTGATGTAAAACTACACAAATAT
TGTGCTGCATTGAGCTTTCAAAAATTGCCAGCTAACAAGAGGAAATGCCC
CAAATGCAAAACCGAGTGGACTCGAAATATCATCAAGCTGTCAAGACCCA
GTAATAACAATAATAGCATCAACTTAGAGGAAACTGTGGTAAATCATCGT
AATGTACCTACATCCAGTCAACAGCCCTCAACATCTAGTGGTAAAAAGCG
TGCAAGAAGGTGAAAATTCTCCTCATAGACCTCAAGGGTCTTTTATATTA
CCTTCAACATGGCTTCTTCAAACTAAACAGGCAATCGAAAGATAATCTTG
ATATATTTGGAAGGATCTGATATGCTTGAAATGAGTTGTGAAGAATTGTA
cctgattttgaaatattcaatacgGAATATTGTACTATTCATAACTCTTT
ATAATGATCACACGTCGAAATTCTGATATACTGAGAAAAAAGTATGGAAC
TGAAACTGCAAAAACGATTAGAcgaaataagaacattcaaatctttctgg
gagtaaaatgaaaacaaaaatgttgcATCGTCACCCTTGGATGTTTCGCA
TCAATCTAAAGCATAACATATTTTTAATTGGGTCAATCATTcagtcattt
gtgtaaaaattgTACATTCTATTTAGTAGTATTTTATATTTCATCTTAGT
TTTTTATGCTATTTTAATGGCGTACTATATTTCAAAACTAGGCTTAATTT
GACTAATCTTGTCACATAGGCGACACAGTGTCAAGTGGACATGTTCAATG
ACCAATTAgtgttcaaaaatattttaatcccATGTATGTTTGcctttctg
aaaatattttggtcagtTTATGTTTTATCtgaagcggggg
Run BLAST on NCBI

protein sequence of TCONS_00061650-protein

>TCONS_00061650-protein ID=TCONS_00061650-protein|Name=TCONS_00061650-protein|organism=Clytia hemisphaerica|type=polypeptide|length=275bp
MVYHNGHRLFLQAFVSKRLIKEKEAKDLYMKVCNICEADGNPDEFLDFIS
LINKQLESLFMEIRRGCAEDTGHVYFSLVNKAEDEHSKLATEYQAHEIEL
IKLALNLIIESQNGSVSSLDLVNLGMDLTKRIPAQASEELIMKLVEDGWL
TEKDGKVFFGPRTTIELGQYLRNKYKEQIGECPLCHDFVVMGDICEECDV
KLHKYCAALSFQKLPANKRKCPKCKTEWTRNIIKLSRPSNNNNSINLEET
VVNHRNVPTSSQQPSTSSGKKRARR
Run BLAST on NCBI

transcript from alignment at scaffold_36:170381..176716-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00061650 ID=TCONS_00061650|Name=TCONS_00061650|organism=Clytia hemisphaerica|type=transcript|length=6336bp|location=Sequence derived from alignment at scaffold_36:170381..176716- (Clytia hemisphaerica)
AAATTTTTTCTTCAATCAAGGCATGAAAGATATTTTAACAAACTTGGAAA
ATTATTGAGATATTTAACTCCTGAACGGTCGTTAATAAGACGTACCCAGT
AAAAGGGTATCAAAAATGAGGAATTCAGTGAAAAAATTGCCAAATTTGGC
ATTTTTGGGGGTGGTATACATGCTGAATGTTGCATTTTGTCTGAAGAAAT
TTATTATTATAATTATTTAGAAGAAAATTTGCCACTTTATATAAACCTTT
TCTCTTTTAGATTTTTAGCAACCTAATTTTAGAACATGGTTTATCATAAT
GGCCATAGGCTTTTTCTTCAAGCTTTTGTTTCAAAAAGACTAATCAAGGA
AAAAGAAGCAAAAGATTTGTACATGAAAGTATGCAATATTTGTGAAGGTA
TGAATTTAGTTATTTTTAATAAAGATACAAACTTTGATGGATTTTCATAT
TTAAAACTGTCTTCCAAAAAATCAATATTCAGATATTGTAGTCCACAAAA
CATTTTGAACATAATTTCTTGAATAACAAAATACCACTTTAAATATTTAC
TACACACATTGCAAAATAATAATTTGGTAGTAAAAAAGGTATTGAATTGC
ACAAAGTGTCCTTGTGAAATCCTATCATTTTGCAGATGAGCTCAACTGTA
AATTTCAATCTGTTAAAATCCTACGAACTAAGTACTTTCTTGATGGATGA
TTTTAATCTGTAGGGTGAAAGCTACATTTTAATCTTCAACAAAAGACATC
TATCTTTCAGCTGATGGAAATCCTGATGAGTTTCTTGACTTTATCAGTTT
GATAAATAAACAACTAGAATCGCTTTTCATGGAAATAAGAAGAGGATGTG
CTGAAGATACTGGTCACGTCTATTTTAGCTTGGTATGTTTCATCTGCATG
TTTTTTCATTGATATATAGTCAGACTTACAAAGGTCAATTTGTTCCCTGG
ACATGCACTGTGCCCCAAAGTTCATCTGTATAGATTTTAATTTAAATAAC
CAGGATTACTGAAGCTGAACAAAAATAAAAAATTTGACCCATAGGGATTC
CAGGACACAGCATTATCACTTGGATACTTCACAGTGGGCAGGTCTGTGTG
GGTGGGTCTGAAAGAGTTAAAGGACATCATTTATCTCCTTTCATTTGCTT
AACACAGAATTTTTAAATGAAAGAAAATAACTATTTTCACCTCTCCTGGA
CGGGGCTCGTAGTCTTGAGAAATTATTTTCTTAGTTTTGATTTGTCAGTA
TAAGGGACACACTGCACTTTCCATATCATCTTTATTACCAAAAAATCAAA
ACACATTCTCTTCTTTTATTACCAAAATATTTTCTTTTAATTTTTCCATA
CTCCTTAGGTTAACAAAGCAGAGGATGAACATTCAAAGTTAGCCACAGAA
TATCAAGCTCATGAAATTGAACTTATCAAATTGGCTGTAAGTTTACATCA
TAATGATTCAAATAATGTCAATTGGCTGGGAAAGATATCCAGGTCAAACA
AACCGTTTGTCATTAAGTTTGTGTAATATGAAAAATCAAAATATAATAGC
CGCATTCTTTTTCACCGTTCAACATAAGCTTGTGTAATATGTAATAGCTA
TGGGACAGTTTATTTTGATATTGTACAAGCAAATGTCTGATAACTGGTTT
ATCGGTAACCCAAAAAATGCACTTTTCGTGTTGGAATAAAGCGCAGGGCA
CTGTTGTAGCAAAGTGATGTTAGATTGCTGCTACTGCTACAATGCAACAA
CATCATCGTCAATTTATATTTTGTACATGTAAAATACAAGATATATTGTA
CTGTTTTTTAACCAATCAGATTGCAGATATTTTTTGGATCGACAATAAAA
GTGTGATATCGAGAAATAAAGAATTAATTTACAATTGCTACACAGTGTTT
AGACATGGCGCAATCTTGCAATGATTTTCTTTCGATAAAGAAATTTCTCA
ATATTTCATTTGAATTTTCTTGAGCATTTTGTGATTATATTTATTTATAT
ATGTAATATTTTTCCAGCTGAATTTGATTATTGAATCGCAAAATGGTTCA
GTATCTTCTTTGGATCTCGTCAATCTTGGAATGGATCTTACAAAAAGGAT
TCCAGCTCAAGCCTCTGAAGTAAGTCTTTCAAAGCATGTGTATGTGCAAA
GAATTACAGTTCTGGGTTAAGTTGATTTAATCCCTTTCAATTTGCAATAA
TACAATACAAAAGATTGTCTTACAACTATTTATCACTATCTTCCATTTGT
CAAAACACTCTGTTATTAGGTATTTCTGTTTGAACCAGTGTTTCCAAAAC
ACCATAATTATTAATATGAAAACTTATTTTTGCGGGAACCTTTTCATTGA
AAAATTTGAAAAGTCTCAAGGGAAATGAATGAAATGTGTCCAAAAAAGGG
AAAACCACGAAAATTAATTCCCCCGAAATGCAATATTTTTTCAATTGCGA
AAATTAGTTCCCGCTAAAATTATTTCCCTTCGGGTAGGTATTGTTTTGGG
AGTATAGTGTTGTTCATATTTATGATTTTTCATAAACCTTTTTTCGACAT
TTTTATTTTGAAATCTTCAGGAGCTGATCATGAAACTTGTTGAAGATGGT
TGGTTGACAGAAGTATGTATATCACAGAAATTTCTTTTACTTTAGAAATT
CTTCATTCCTGCGTAAATCTGAAATAATACACCTATAAACCTTCAGCTGC
ACGGTTGGCTTTTAAGGGGTCTACTAATGACTCTATGAGGAAGATTTTGT
TTTCAGTGAACGACTTTTTTGGGCTATTAAACAAAATCAAACCAAGCATA
AGTTGCCAAAACTCTAGAGAAATTTTCCCTAGTCTTTACAGTTGAGTGCA
AACTATTTTTAGCATTCGCATAACTAACTAAATCAACGTCAGCTTTAATG
CAAGGGTATCTTACATTTTTCACAAGAGTATGTTTTCATCACATGTTTTT
CCTATATACGTTGAGAAGAATTTTTCTTAATTGATTTGTTTTTTTTATTT
ATTTGAATACTTGAAACTTTTGGTTTTTAGAAAGATGGTAAAGTATTCTT
TGGCCCTCGAACAACAATTGAGCTTGGCCAATACTTAAGAAACAAATACA
AAGAACAAATTGGTGAATGTCCTCTATGTCATGATTTTGTTGTTATGGTA
TGTTTTTTTCTCTATTTTCTAGAAAAAATATCGGTTCATGGGAGATTAAA
GATAAAACTGACCAGGGGTATTGAAAAAATTCATATAACTGCAATGTCCA
TAGGGGGGATGTGTTAAATGTCTAGGGGGTCGAGTCCAGGGTTGAAACGT
GCGTTCAGGGGCTGAAAATTTGAAATAGTCAGGGGTAGGTTATTGAAAAG
ATAATCTTTTACTCATCCTTTAAATGGATTTTTTCTGAGAGAAACCATTC
AGTTTTTCCTGCAGAAGTATAGATAAAATCCATTCGCTTCAAATTTTCAC
TCTTTCTCGCTACCATGTGATTTTGATTAGAGTTATTCTCTTGAGAATGG
TTTTCACATGGTGACAAAAAGTGAATGGAGTTTAAATTCAATTGTTTTTC
ACATGTTAAGCTGAATATGTCTTCTAATCTTAAAAGGTTGTGTTATAGTT
TCAGAAAATAAGTAGAGTTTACACATTAATATCTGGCCGTTATATAGCCA
GAACCTGGAGTTGCTGTGTAAACTCTACCTAACTTTCTGTATTGCCTCTG
TTGACGCTTAAATTAGGGCAAATGGCTTTGGAAAGCAAAGGTTTTTTGCC
TCCTTGTGTTGAAGTTATCAAATATTAATCTGGGGTTTTTAAATCAGAGC
TTATCATTGTATAAAGCTGAAGGTCTACAACCTTTCATAAGAAAGAACAA
ATTAATGATGCCTTAAAGTTTGTGCCACATTTCGGATGAAGGAATGAATA
TAGCACTTTCTTCTTTTGCGTTTCATATTTTTTGCTAATATTGTATGAAA
AGTGGGTTGAGCAACTTCTAAAATGAGTCGTATCCTATCCTAAATGGGAG
ACTGGACAATAGCTTTTGGCTATACCTAATTGGCTAATGAATACTCAATT
GGGCTCTTCCAGAAAATTTTTATTCATGGAGGGTGGATTTTTGTCCAGGG
AGTAGTGAAAAACTTTGAAATTTGCCTTATTTAGGGTTAATTATGAATGT
CCAGGGGGTCAACTGATGCTTGTCCGGGGGTTAGATCTGTTGTCCAAGGG
GTAAATTTCCAAAAACTGTTATATCCTCCAGCCTCCATATTCAATTTTCT
TTCTGGAAGAGCCCATTCCTCAGTTAAATCTTACAAACTGTGTCATATAA
GAAAACTTTATAATTGCACTTTATTGTTTTACAGGGTGATATATGTGAAG
AGTGTGATGTAAAACTACACAAATATTGTGCTGCATTGAGCTTTCAAAAA
TTGTAAGTTTAATAAACATTGAATGAAAACTATTTTAATTGGAAAAATTC
CGTTTTGTTATTTTATTGTCTTTTAGAGAAAAAAATATAACAACAACATA
TGCATGTACCAGGTGTGCCAGAAATAAGTTACCCTCTTTGACCTGATATT
GTAGGCAGTAGAATATAGATTTTTCAAAGATTGTTTCGGAATCACTCAGC
GGAAAGCCTACCTTAAAATTTGGTGTATTACTTTTCATTTTACTTCATTG
GTTCAAAAGTTATGTTCAAAAACCTTAAATATCAATCTTAAAAAATGTCA
ATGGCACACCCGGTAAGAAAAGCCACAGTAAATTCTCCCATACAAGGAAT
GATAAGTTAAGGGAGACTTTCCTTTATGAACAATTATTTGACTTCTGTTA
AGGAGACCCCCCAAGTCGTTTTCGTGATGATTTTTGCAGCATGATTACAT
GATTTGGAAATTTTTTCTCTGTGATGTGATGAGAGGTTAAAACGTGATCA
TGATTTGAAAAATTTTTGAGCCGTGATACACGATTTGGACTTTTTCAAAG
GGATGTGTGATTGTCCATTTTTTTGCTAATTTGCGTGATTGTAATTGAAG
ACAAAATATTTCGTGATATCGTGGCTGGAGGGGCTCTGTTAAGGTTATGA
CTCTGAAAGATCTATATCAAGACCTATATTTCATGATAAGAATTATATCA
TATTTTAATTTTGCAGGCCAGCTAACAAGAGGAAATGCCCCAAATGCAAA
ACCGAGTGGACTCGAAATATCATCAAGCTGTCAAGACCCAGTAATAACAA
TAATAGCATCAACTTAGGTATTGATAGAATTTTACAAAGTTTAGCATTCT
TTTGACAGTTTTACATTAAGCCTTAAGTGTCAATTTTAGTGCCAATCGTT
TCTGAAGACTTTCGATAAATTTTTTTTAATTCCTATGGCAACCAATGCCA
CCATTTTATCAGTTGCCAAGTTAAAGGTTTTGTTTTTACATAAAGTGTTC
CCGTTTCATATCAGACACATGTTTCATATCAGTGTCTCCCTATTGTTATA
TTATGTTGATAAAGTTGTTGTTCTTTTCCTCTTTCTGACCAATCTTGCTC
CACATCCGTGTCAATCCAATGTGGAAAAGCTTGTGTTGTGAATTAAAAAT
TGACGACTAAGCAAACGATATCACTCTATTATCTAGAAACAAAACCTTTA
ACTTCATAAATTTTGTATTACAGAGGAAACTGTGGTAAATCATCGTAATG
TACCTACATCCAGTCAACAGCCCTCAACATCTAGTGGTAAAAAGCGTGCA
AGAAGGTGAAAATTCTCCTCATAGACCTCAAGGGTCTTTTATATTACCTT
CAACATGGCTTCTTCAAACTAAACAGGCAATCGAAAGATAATCTTGATAT
ATTTGGAAGGATCTGATATGCTTGAAATGAGTTGTGAAGAATTGTACCTG
ATTTTGAAATATTCAATACGGAATATTGTACTATTCATAACTCTTTATAA
TGATCACACGTCGAAATTCTGATATACTGAGAAAAAAGTATGGAACTGAA
ACTGCAAAAACGATTAGACGAAATAAGAACATTCAAATCTTTCTGGGAGT
AAAATGAAAACAAAAATGTTGCATCGTCACCCTTGGATGTTTCGCATCAA
TCTAAAGCATAACATATTTTTAATTGGGTCAATCATTCAGTCATTTGTGT
AAAAATTGTACATTCTATTTAGTAGTATTTTATATTTCATCTTAGTTTTT
TATGCTATTTTAATGGCGTACTATATTTCAAAACTAGGCTTAATTTGACT
AATCTTGTCACATAGGCGACACAGTGTCAAGTGGACATGTTCAATGACCA
ATTAGTGTTCAAAAATATTTTAATCCCATGTATGTTTGCCTTTCTGAAAA
TATTTTGGTCAGTTTATGTTTTATCTGAAGCGGGGG

Coding sequence (CDS) from alignment at scaffold_36:170381..176716-

>TCONS_00061650 ID=TCONS_00061650|Name=TCONS_00061650|organism=Clytia hemisphaerica|type=CDS|length=7452bp|location=Sequence derived from alignment at scaffold_36:170381..176716- (Clytia hemisphaerica)
AGGAAACTGTGGTAAATCATCGTAATGTACCTACATCCAGTCAACAGCCC
TCAACATCTAGTGGTAAAAAGCGTGCAAGAAGGTGAGCCAGCTAACAAGA
GGAAATGCCCCAAATGCAAAACCGAGTGGACTCGAAATATCATCAAGCTG
TCAAGACCCAGTAATAACAATAATAGCATCAACTTAGGGTGATATATGTG
AAGAGTGTGATGTAAAACTACACAAATATTGTGCTGCATTGAGCTTTCAA
AAATTAAAGATGGTAAAGTATTCTTTGGCCCTCGAACAACAATTGAGCTT
GGCCAATACTTAAGAAACAAATACAAAGAACAAATTGGTGAATGTCCTCT
ATGTCATGATTTTGTTGTTATGGAGCTGATCATGAAACTTGTTGAAGATG
GTTGGTTGACAGAACTGAATTTGATTATTGAATCGCAAAATGGTTCAGTA
TCTTCTTTGGATCTCGTCAATCTTGGAATGGATCTTACAAAAAGGATTCC
AGCTCAAGCCTCTGAAGTTAACAAAGCAGAGGATGAACATTCAAAGTTAG
CCACAGAATATCAAGCTCATGAAATTGAACTTATCAAATTGGCTCTGATG
GAAATCCTGATGAGTTTCTTGACTTTATCAGTTTGATAAATAAACAACTA
GAATCGCTTTTCATGGAAATAAGAAGAGGATGTGCTGAAGATACTGGTCA
CGTCTATTTTAGCTTGATGGTTTATCATAATGGCCATAGGCTTTTTCTTC
AAGCTTTTGTTTCAAAAAGACTAATCAAGGAAAAAGAAGCAAAAGATTTG
TACATGAAAGTATGCAATATTTGTGAAGAGGAAACTGTGGTAAATCATCG
TAATGTACCTACATCCAGTCAACAGCCCTCAACATCTAGTGGTAAAAAGC
GTGCAAGAAGGTGAGCCAGCTAACAAGAGGAAATGCCCCAAATGCAAAAC
CGAGTGGACTCGAAATATCATCAAGCTGTCAAGACCCAGTAATAACAATA
ATAGCATCAACTTAGGGTGATATATGTGAAGAGTGTGATGTAAAACTACA
CAAATATTGTGCTGCATTGAGCTTTCAAAAATTAAAGATGGTAAAGTATT
CTTTGGCCCTCGAACAACAATTGAGCTTGGCCAATACTTAAGAAACAAAT
ACAAAGAACAAATTGGTGAATGTCCTCTATGTCATGATTTTGTTGTTATG
GAGCTGATCATGAAACTTGTTGAAGATGGTTGGTTGACAGAACTGAATTT
GATTATTGAATCGCAAAATGGTTCAGTATCTTCTTTGGATCTCGTCAATC
TTGGAATGGATCTTACAAAAAGGATTCCAGCTCAAGCCTCTGAAGTTAAC
AAAGCAGAGGATGAACATTCAAAGTTAGCCACAGAATATCAAGCTCATGA
AATTGAACTTATCAAATTGGCTCTGATGGAAATCCTGATGAGTTTCTTGA
CTTTATCAGTTTGATAAATAAACAACTAGAATCGCTTTTCATGGAAATAA
GAAGAGGATGTGCTGAAGATACTGGTCACGTCTATTTTAGCTTGATGGTT
TATCATAATGGCCATAGGCTTTTTCTTCAAGCTTTTGTTTCAAAAAGACT
AATCAAGGAAAAAGAAGCAAAAGATTTGTACATGAAAGTATGCAATATTT
GTGAAGAGGAAACTGTGGTAAATCATCGTAATGTACCTACATCCAGTCAA
CAGCCCTCAACATCTAGTGGTAAAAAGCGTGCAAGAAGGTGAGCCAGCTA
ACAAGAGGAAATGCCCCAAATGCAAAACCGAGTGGACTCGAAATATCATC
AAGCTGTCAAGACCCAGTAATAACAATAATAGCATCAACTTAGGGTGATA
TATGTGAAGAGTGTGATGTAAAACTACACAAATATTGTGCTGCATTGAGC
TTTCAAAAATTAAAGATGGTAAAGTATTCTTTGGCCCTCGAACAACAATT
GAGCTTGGCCAATACTTAAGAAACAAATACAAAGAACAAATTGGTGAATG
TCCTCTATGTCATGATTTTGTTGTTATGGAGCTGATCATGAAACTTGTTG
AAGATGGTTGGTTGACAGAACTGAATTTGATTATTGAATCGCAAAATGGT
TCAGTATCTTCTTTGGATCTCGTCAATCTTGGAATGGATCTTACAAAAAG
GATTCCAGCTCAAGCCTCTGAAGTTAACAAAGCAGAGGATGAACATTCAA
AGTTAGCCACAGAATATCAAGCTCATGAAATTGAACTTATCAAATTGGCT
CTGATGGAAATCCTGATGAGTTTCTTGACTTTATCAGTTTGATAAATAAA
CAACTAGAATCGCTTTTCATGGAAATAAGAAGAGGATGTGCTGAAGATAC
TGGTCACGTCTATTTTAGCTTGATGGTTTATCATAATGGCCATAGGCTTT
TTCTTCAAGCTTTTGTTTCAAAAAGACTAATCAAGGAAAAAGAAGCAAAA
GATTTGTACATGAAAGTATGCAATATTTGTGAAGAGGAAACTGTGGTAAA
TCATCGTAATGTACCTACATCCAGTCAACAGCCCTCAACATCTAGTGGTA
AAAAGCGTGCAAGAAGGTGAGCCAGCTAACAAGAGGAAATGCCCCAAATG
CAAAACCGAGTGGACTCGAAATATCATCAAGCTGTCAAGACCCAGTAATA
ACAATAATAGCATCAACTTAGGGTGATATATGTGAAGAGTGTGATGTAAA
ACTACACAAATATTGTGCTGCATTGAGCTTTCAAAAATTAAAGATGGTAA
AGTATTCTTTGGCCCTCGAACAACAATTGAGCTTGGCCAATACTTAAGAA
ACAAATACAAAGAACAAATTGGTGAATGTCCTCTATGTCATGATTTTGTT
GTTATGGAGCTGATCATGAAACTTGTTGAAGATGGTTGGTTGACAGAACT
GAATTTGATTATTGAATCGCAAAATGGTTCAGTATCTTCTTTGGATCTCG
TCAATCTTGGAATGGATCTTACAAAAAGGATTCCAGCTCAAGCCTCTGAA
GTTAACAAAGCAGAGGATGAACATTCAAAGTTAGCCACAGAATATCAAGC
TCATGAAATTGAACTTATCAAATTGGCTCTGATGGAAATCCTGATGAGTT
TCTTGACTTTATCAGTTTGATAAATAAACAACTAGAATCGCTTTTCATGG
AAATAAGAAGAGGATGTGCTGAAGATACTGGTCACGTCTATTTTAGCTTG
ATGGTTTATCATAATGGCCATAGGCTTTTTCTTCAAGCTTTTGTTTCAAA
AAGACTAATCAAGGAAAAAGAAGCAAAAGATTTGTACATGAAAGTATGCA
ATATTTGTGAAGAGGAAACTGTGGTAAATCATCGTAATGTACCTACATCC
AGTCAACAGCCCTCAACATCTAGTGGTAAAAAGCGTGCAAGAAGGTGAGC
CAGCTAACAAGAGGAAATGCCCCAAATGCAAAACCGAGTGGACTCGAAAT
ATCATCAAGCTGTCAAGACCCAGTAATAACAATAATAGCATCAACTTAGG
GTGATATATGTGAAGAGTGTGATGTAAAACTACACAAATATTGTGCTGCA
TTGAGCTTTCAAAAATTAAAGATGGTAAAGTATTCTTTGGCCCTCGAACA
ACAATTGAGCTTGGCCAATACTTAAGAAACAAATACAAAGAACAAATTGG
TGAATGTCCTCTATGTCATGATTTTGTTGTTATGGAGCTGATCATGAAAC
TTGTTGAAGATGGTTGGTTGACAGAACTGAATTTGATTATTGAATCGCAA
AATGGTTCAGTATCTTCTTTGGATCTCGTCAATCTTGGAATGGATCTTAC
AAAAAGGATTCCAGCTCAAGCCTCTGAAGTTAACAAAGCAGAGGATGAAC
ATTCAAAGTTAGCCACAGAATATCAAGCTCATGAAATTGAACTTATCAAA
TTGGCTCTGATGGAAATCCTGATGAGTTTCTTGACTTTATCAGTTTGATA
AATAAACAACTAGAATCGCTTTTCATGGAAATAAGAAGAGGATGTGCTGA
AGATACTGGTCACGTCTATTTTAGCTTGATGGTTTATCATAATGGCCATA
GGCTTTTTCTTCAAGCTTTTGTTTCAAAAAGACTAATCAAGGAAAAAGAA
GCAAAAGATTTGTACATGAAAGTATGCAATATTTGTGAAGAGGAAACTGT
GGTAAATCATCGTAATGTACCTACATCCAGTCAACAGCCCTCAACATCTA
GTGGTAAAAAGCGTGCAAGAAGGTGAGCCAGCTAACAAGAGGAAATGCCC
CAAATGCAAAACCGAGTGGACTCGAAATATCATCAAGCTGTCAAGACCCA
GTAATAACAATAATAGCATCAACTTAGGGTGATATATGTGAAGAGTGTGA
TGTAAAACTACACAAATATTGTGCTGCATTGAGCTTTCAAAAATTAAAGA
TGGTAAAGTATTCTTTGGCCCTCGAACAACAATTGAGCTTGGCCAATACT
TAAGAAACAAATACAAAGAACAAATTGGTGAATGTCCTCTATGTCATGAT
TTTGTTGTTATGGAGCTGATCATGAAACTTGTTGAAGATGGTTGGTTGAC
AGAACTGAATTTGATTATTGAATCGCAAAATGGTTCAGTATCTTCTTTGG
ATCTCGTCAATCTTGGAATGGATCTTACAAAAAGGATTCCAGCTCAAGCC
TCTGAAGTTAACAAAGCAGAGGATGAACATTCAAAGTTAGCCACAGAATA
TCAAGCTCATGAAATTGAACTTATCAAATTGGCTCTGATGGAAATCCTGA
TGAGTTTCTTGACTTTATCAGTTTGATAAATAAACAACTAGAATCGCTTT
TCATGGAAATAAGAAGAGGATGTGCTGAAGATACTGGTCACGTCTATTTT
AGCTTGATGGTTTATCATAATGGCCATAGGCTTTTTCTTCAAGCTTTTGT
TTCAAAAAGACTAATCAAGGAAAAAGAAGCAAAAGATTTGTACATGAAAG
TATGCAATATTTGTGAAGAGGAAACTGTGGTAAATCATCGTAATGTACCT
ACATCCAGTCAACAGCCCTCAACATCTAGTGGTAAAAAGCGTGCAAGAAG
GTGAGCCAGCTAACAAGAGGAAATGCCCCAAATGCAAAACCGAGTGGACT
CGAAATATCATCAAGCTGTCAAGACCCAGTAATAACAATAATAGCATCAA
CTTAGGGTGATATATGTGAAGAGTGTGATGTAAAACTACACAAATATTGT
GCTGCATTGAGCTTTCAAAAATTAAAGATGGTAAAGTATTCTTTGGCCCT
CGAACAACAATTGAGCTTGGCCAATACTTAAGAAACAAATACAAAGAACA
AATTGGTGAATGTCCTCTATGTCATGATTTTGTTGTTATGGAGCTGATCA
TGAAACTTGTTGAAGATGGTTGGTTGACAGAACTGAATTTGATTATTGAA
TCGCAAAATGGTTCAGTATCTTCTTTGGATCTCGTCAATCTTGGAATGGA
TCTTACAAAAAGGATTCCAGCTCAAGCCTCTGAAGTTAACAAAGCAGAGG
ATGAACATTCAAAGTTAGCCACAGAATATCAAGCTCATGAAATTGAACTT
ATCAAATTGGCTCTGATGGAAATCCTGATGAGTTTCTTGACTTTATCAGT
TTGATAAATAAACAACTAGAATCGCTTTTCATGGAAATAAGAAGAGGATG
TGCTGAAGATACTGGTCACGTCTATTTTAGCTTGATGGTTTATCATAATG
GCCATAGGCTTTTTCTTCAAGCTTTTGTTTCAAAAAGACTAATCAAGGAA
AAAGAAGCAAAAGATTTGTACATGAAAGTATGCAATATTTGTGAAGAGGA
AACTGTGGTAAATCATCGTAATGTACCTACATCCAGTCAACAGCCCTCAA
CATCTAGTGGTAAAAAGCGTGCAAGAAGGTGAGCCAGCTAACAAGAGGAA
ATGCCCCAAATGCAAAACCGAGTGGACTCGAAATATCATCAAGCTGTCAA
GACCCAGTAATAACAATAATAGCATCAACTTAGGGTGATATATGTGAAGA
GTGTGATGTAAAACTACACAAATATTGTGCTGCATTGAGCTTTCAAAAAT
TAAAGATGGTAAAGTATTCTTTGGCCCTCGAACAACAATTGAGCTTGGCC
AATACTTAAGAAACAAATACAAAGAACAAATTGGTGAATGTCCTCTATGT
CATGATTTTGTTGTTATGGAGCTGATCATGAAACTTGTTGAAGATGGTTG
GTTGACAGAACTGAATTTGATTATTGAATCGCAAAATGGTTCAGTATCTT
CTTTGGATCTCGTCAATCTTGGAATGGATCTTACAAAAAGGATTCCAGCT
CAAGCCTCTGAAGTTAACAAAGCAGAGGATGAACATTCAAAGTTAGCCAC
AGAATATCAAGCTCATGAAATTGAACTTATCAAATTGGCTCTGATGGAAA
TCCTGATGAGTTTCTTGACTTTATCAGTTTGATAAATAAACAACTAGAAT
CGCTTTTCATGGAAATAAGAAGAGGATGTGCTGAAGATACTGGTCACGTC
TATTTTAGCTTGATGGTTTATCATAATGGCCATAGGCTTTTTCTTCAAGC
TTTTGTTTCAAAAAGACTAATCAAGGAAAAAGAAGCAAAAGATTTGTACA
TGAAAGTATGCAATATTTGTGAAGAGGAAACTGTGGTAAATCATCGTAAT
GTACCTACATCCAGTCAACAGCCCTCAACATCTAGTGGTAAAAAGCGTGC
AAGAAGGTGAGCCAGCTAACAAGAGGAAATGCCCCAAATGCAAAACCGAG
TGGACTCGAAATATCATCAAGCTGTCAAGACCCAGTAATAACAATAATAG
CATCAACTTAGGGTGATATATGTGAAGAGTGTGATGTAAAACTACACAAA
TATTGTGCTGCATTGAGCTTTCAAAAATTAAAGATGGTAAAGTATTCTTT
GGCCCTCGAACAACAATTGAGCTTGGCCAATACTTAAGAAACAAATACAA
AGAACAAATTGGTGAATGTCCTCTATGTCATGATTTTGTTGTTATGGAGC
TGATCATGAAACTTGTTGAAGATGGTTGGTTGACAGAACTGAATTTGATT
ATTGAATCGCAAAATGGTTCAGTATCTTCTTTGGATCTCGTCAATCTTGG
AATGGATCTTACAAAAAGGATTCCAGCTCAAGCCTCTGAAGTTAACAAAG
CAGAGGATGAACATTCAAAGTTAGCCACAGAATATCAAGCTCATGAAATT
GAACTTATCAAATTGGCTCTGATGGAAATCCTGATGAGTTTCTTGACTTT
ATCAGTTTGATAAATAAACAACTAGAATCGCTTTTCATGGAAATAAGAAG
AGGATGTGCTGAAGATACTGGTCACGTCTATTTTAGCTTGATGGTTTATC
ATAATGGCCATAGGCTTTTTCTTCAAGCTTTTGTTTCAAAAAGACTAATC
AAGGAAAAAGAAGCAAAAGATTTGTACATGAAAGTATGCAATATTTGTGA
AG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_038661XLOC_038661Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00061650-exon-scaffold_36-1575043694:176320..176716TCONS_00061650-exon-scaffold_36-1575043694:176320..176716Clytia hemisphaericaexon
TCONS_00061650-exon-scaffold_36-1575043694:175835..175956TCONS_00061650-exon-scaffold_36-1575043694:175835..175956Clytia hemisphaericaexon
TCONS_00061650-exon-scaffold_36-1575043694:175281..175358TCONS_00061650-exon-scaffold_36-1575043694:175281..175358Clytia hemisphaericaexon
TCONS_00061650-exon-scaffold_36-1575043694:174598..174699TCONS_00061650-exon-scaffold_36-1575043694:174598..174699Clytia hemisphaericaexon
TCONS_00061650-exon-scaffold_36-1575043694:174105..174146TCONS_00061650-exon-scaffold_36-1575043694:174105..174146Clytia hemisphaericaexon
TCONS_00061650-exon-scaffold_36-1575043694:173570..173686TCONS_00061650-exon-scaffold_36-1575043694:173570..173686Clytia hemisphaericaexon
TCONS_00061650-exon-scaffold_36-1575043694:172315..172382TCONS_00061650-exon-scaffold_36-1575043694:172315..172382Clytia hemisphaericaexon
TCONS_00061650-exon-scaffold_36-1575043694:171500..171600TCONS_00061650-exon-scaffold_36-1575043694:171500..171600Clytia hemisphaericaexon
TCONS_00061650-exon-scaffold_36-1575043694:170381..171093TCONS_00061650-exon-scaffold_36-1575043694:170381..171093Clytia hemisphaericaexon
TCONS_00061650-exon-scaffold_36-1510915933:176320..176716TCONS_00061650-exon-scaffold_36-1510915933:176320..176716Clytia hemisphaericaexon
TCONS_00061650-exon-scaffold_36-1510915933:175835..175956TCONS_00061650-exon-scaffold_36-1510915933:175835..175956Clytia hemisphaericaexon
TCONS_00061650-exon-scaffold_36-1510915933:175281..175358TCONS_00061650-exon-scaffold_36-1510915933:175281..175358Clytia hemisphaericaexon
TCONS_00061650-exon-scaffold_36-1510915933:174598..174699TCONS_00061650-exon-scaffold_36-1510915933:174598..174699Clytia hemisphaericaexon
TCONS_00061650-exon-scaffold_36-1510915933:174105..174146TCONS_00061650-exon-scaffold_36-1510915933:174105..174146Clytia hemisphaericaexon
TCONS_00061650-exon-scaffold_36-1510915933:173570..173686TCONS_00061650-exon-scaffold_36-1510915933:173570..173686Clytia hemisphaericaexon
TCONS_00061650-exon-scaffold_36-1510915933:172315..172382TCONS_00061650-exon-scaffold_36-1510915933:172315..172382Clytia hemisphaericaexon
TCONS_00061650-exon-scaffold_36-1510915933:171500..171600TCONS_00061650-exon-scaffold_36-1510915933:171500..171600Clytia hemisphaericaexon
TCONS_00061650-exon-scaffold_36-1510915933:170381..171093TCONS_00061650-exon-scaffold_36-1510915933:170381..171093Clytia hemisphaericaexon
TCONS_00061650-exon-scaffold_36-1491911889:176320..176716TCONS_00061650-exon-scaffold_36-1491911889:176320..176716Clytia hemisphaericaexon
TCONS_00061650-exon-scaffold_36-1491911889:175835..175956TCONS_00061650-exon-scaffold_36-1491911889:175835..175956Clytia hemisphaericaexon
TCONS_00061650-exon-scaffold_36-1491911889:175281..175358TCONS_00061650-exon-scaffold_36-1491911889:175281..175358Clytia hemisphaericaexon
TCONS_00061650-exon-scaffold_36-1491911889:174598..174699TCONS_00061650-exon-scaffold_36-1491911889:174598..174699Clytia hemisphaericaexon
TCONS_00061650-exon-scaffold_36-1491911889:174105..174146TCONS_00061650-exon-scaffold_36-1491911889:174105..174146Clytia hemisphaericaexon
TCONS_00061650-exon-scaffold_36-1491911889:173570..173686TCONS_00061650-exon-scaffold_36-1491911889:173570..173686Clytia hemisphaericaexon
TCONS_00061650-exon-scaffold_36-1491911889:172315..172382TCONS_00061650-exon-scaffold_36-1491911889:172315..172382Clytia hemisphaericaexon
TCONS_00061650-exon-scaffold_36-1491911889:171500..171600TCONS_00061650-exon-scaffold_36-1491911889:171500..171600Clytia hemisphaericaexon
TCONS_00061650-exon-scaffold_36-1491911889:170381..171093TCONS_00061650-exon-scaffold_36-1491911889:170381..171093Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00061650-proteinTCONS_00061650-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_36supercontigscaffold_36:170381..176716 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
34.3121	34.0244	40.9459	40.6485	27.3496	18.6959	24.7889	22.7927	21.0032	14.4245	15.0981	13.2136	8.06345	10.8391	14.7746	15.5665	26.3448	26.1969	7.18028	8.7228	23.5415	23.6759	46.6739	41.9919	8.8578	13.6589	12.3026	10.6944	23.5225	29.9898
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR014857Znf_RING-like
IPR013083Znf_RING/FYVE/PHD
IPR011513Nse1
Vocabulary: Biological Process
TermDefinition
GO:0006281DNA repair
Vocabulary: Cellular Component
TermDefinition
GO:0030915Smc5-Smc6 complex
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006281 DNA repair
cellular_component GO:0030915 Smc5-Smc6 complex
Blast
[Close]
BLAST of TCONS_00061650 vs. Swiss-Prot (Human)
Match: NSE1 (Non-structural maintenance of chromosomes element 1 homolog OS=Homo sapiens GN=NSMCE1 PE=1 SV=5)

HSP 1 Score: 156.762 bits (395), Expect = 4.533e-43
Identity = 82/239 (34.31%), Postives = 135/239 (56.49%), Query Frame = 1 
Query:  304 HRLFLQAFVSKRLIKEKEAKDLYMKVCNICEADGNPDEFLDFISLINKQLESLFMEIRRGCAEDTGHVYFSLVNKAEDEHSKLATEYQAHEIELIKLALNLIIESQNGSVSSLDLVNLGMDLT-KRIPAQASEELIMKLVEDGWLTEKDGKVFFGPRTTIELGQYLRNKYKEQIGECPLCHDFVVMGDICEECDVKLHKYCAALSFQKLPANKRKCPKCKTEWTRNIIKLSRPSNNNNS 1017
            HR FLQ  ++  +++E + K L      + + +   D+  DFI+ IN  LESL++EI+RG  ED G   ++LVN A    SK+AT++  +E++L + AL LII+S+ G  SS +++NL   L  K++  + +E+++ K V++ WL EK+G+     R  +E+ QY+R  Y + +  C +CH  ++ G  CE C +++H  C A  FQ     + +CP C   W   I K+  P     S
Sbjct:   15 HRRFLQLLMTHGVLEEWDVKRLQTHCYKVHDRNATVDKLEDFINNINSVLESLYIEIKRGVTEDDGRPIYALVNLATTSISKMATDFAENELDLFRKALELIIDSETGFASSTNILNLVDQLKGKKMRKKEAEQVLQKFVQNKWLIEKEGEFTLHGRAILEMEQYIRETYPDAVKICNICHSLLIQGQSCETCGIRMHLPCVAKYFQS--NAEPRCPHCNDYWPHEIPKVFDPEKERES 251
The following BLAST results are available for this feature:
BLAST of TCONS_00061650 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
NSE14.533e-4334.31Non-structural maintenance of chromosomes element ... [more]
back to top