TCONS_00061715 (transcript) - C. hemisphaerica

Overview
NameTCONS_00061715
Unique NameTCONS_00061715
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1116

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00061715 ID=TCONS_00061715|Name=TCONS_00061715|organism=Clytia hemisphaerica|type=transcript|length=1116bp
GGATCGAAGCGGGTCAAAgtcacctttaaaatttttatccaggttttgat
gtttcatgtttttttgggtgtagattccgaaaaaataggtcNAGTTTCTA
TCTGTTATTGGTAGAAAAaacaggcgggtcgctcaaggccgcacaACTTT
GGTGGGATGGGAAGGCTTCAAATCCCACTGCACTAAGGAGATCCAATTTT
AGCCCCTCGGGCTTACTTCATTGATCAGTCCCAACTTAGGGCTGTTTTTA
AGAGTGAAATGCATGCAGGGATTGgatttgtttcaaaataatNTCGGGAC
CGTGAATGACCCCCTCCCCTAGCACCGGACTGGGTAGGTctcacgacttg
aaactttctggagacgtcaagcatatcgAAGGGGGGGAGCATGCCGAATT
TCATCACTCCACTGTtaccggtcgccgggctacgggccgcgcAAGGTACG
CTGCAGGACGTCCCCGTACGGACGATTGCCGGGTCGTANCATATAAATGT
TAAAGAGGACGAAGCTGTGCTTTACTTtgtgaaaaatgatgaattcatta
gaaaaaattatcgaAGATCTGTAGAACAAGCATGGCTTGCTTTTCTCAGA
GTGGAAAATATGTCGCCTGTTCTTCGCAAGAAAACTCTTGTTGATATGGA
CACAAAGATTATTCCATTTCTCTCAAATCCCAAAATTCTGATTGACTTTT
TGACTGACTCATACAATGCNATTATTGATTTAAACGACAGCAAGTCAAAA
AGGAGGCTGTTCTCTAACTATCATTTCTTCCATTCTTCTGGGGACTGGTc
ggtttttatttaaaaaattttcaatggcCTGAATTTATTATTCTTAACGT
TTAACTAATATCCTACATTTGAGGTAACAACATTTGACCTTTTTAAGCAA
GGGTAGTACCAGCAATGCCAGACATTCaggataaatttatcaattttttg
ctaatgttttgaaattaatcATTTTATAGTGTTGTGTCAAATTTGATTGA
TCGATATTCGTAGACTACTATCGGAAGTGTCTATCCTTTTGGGACAATGG
GTTGAAACTTTATAATAAGGGATAAGAAGACAAGTTTGACTGGCAGGTTC
ACTGCTCCAATTTGCA
Run BLAST on NCBI

protein sequence of TCONS_00061715-protein

>TCONS_00061715-protein ID=TCONS_00061715-protein|Name=TCONS_00061715-protein|organism=Clytia hemisphaerica|type=polypeptide|length=140bp
MPNFITPLLPVAGLRAAQGTLQDVPVRTIAGSXHINVKEDEAVLYFVKND
EFIRKNYRRSVEQAWLAFLRVENMSPVLRKKTLVDMDTKIIPFLSNPKIL
IDFLTDSYNXIIDLNDSKSKRRLFSNYHFFHSSGDWSVFI
Run BLAST on NCBI

transcript from alignment at scaffold_36:270187..271302

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00061715 ID=TCONS_00061715|Name=TCONS_00061715|organism=Clytia hemisphaerica|type=transcript|length=1116bp|location=Sequence derived from alignment at scaffold_36:270187..271302 (Clytia hemisphaerica)
TGCAAATTGGAGCAGTGAACCTGCCAGTCAAACTTGTCTTCTTATCCCTT
ATTATAAAGTTTCAACCCATTGTCCCAAAAGGATAGACACTTCCGATAGT
AGTCTACGAATATCGATCAATCAAATTTGACACAACACTATAAAATgatt
aatttcaaaacattagcaaaaaattgataaatttatcctGAATGTCTGGC
ATTGCTGGTACTACCCTTGCTTAAAAAGGTCAAATGTTGTTACCTCAAAT
GTAGGATATTAGTTAAACGTTAAGAATAATAAATTCAGgccattgaaaat
tttttaaataaaaaccgACCAGTCCCCAGAAGAATGGAAGAAATGATAGT
TAGAGAACAGCCTCCTTTTTGACTTGCTGTCGTTTAAATCAATAATNGCA
TTGTATGAGTCAGTCAAAAAGTCAATCAGAATTTTGGGATTTGAGAGAAA
TGGAATAATCTTTGTGTCCATATCAACAAGAGTTTTCTTGCGAAGAACAG
GCGACATATTTTCCACTCTGAGAAAAGCAAGCCATGCTTGTTCTACAGAT
CTtcgataattttttctaatgaattcatcatttttcacaAAGTAAAGCAC
AGCTTCGTCCTCTTTAACATTTATATGNTACGACCCGGCAATCGTCCGTA
CGGGGACGTCCTGCAGCGTACCTTgcgcggcccgtagcccggcgaccggt
aACAGTGGAGTGATGAAATTCGGCATGCTCCCCCCCTTcgatatgcttga
cgtctccagaaagtttcaagtcgtgagACCTACCCAGTCCGGTGCTAGGG
GAGGGGGTCATTCACGGTCCCGANattattttgaaacaaatcCAATCCCT
GCATGCATTTCACTCTTAAAAACAGCCCTAAGTTGGGACTGATCAATGAA
GTAAGCCCGAGGGGCTAAAATTGGATCTCCTTAGTGCAGTGGGATTTGAA
GCCTTCCCATCCCACCAAAGTtgtgcggccttgagcgacccgcctgttTT
TTCTACCAATAACAGATAGAAACTNgacctattttttcggaatctacacc
caaaaaaacatgaaacatcaaaacctggataaaaattttaaaggtgacTT
TGACCCGCTTCGATCC

Coding sequence (CDS) from alignment at scaffold_36:270187..271302

>TCONS_00061715 ID=TCONS_00061715|Name=TCONS_00061715|organism=Clytia hemisphaerica|type=CDS|length=423bp|location=Sequence derived from alignment at scaffold_36:270187..271302 (Clytia hemisphaerica)
ttaaataaaaaccgACCAGTCCCCAGAAGAATGGAAGAAATGATAGTTAG
AGAACAGCCTCCTTTTTGACTTGCTGTCGTTTAAATCAATAATNGCATTG
TATGAGTCAGTCAAAAAGTCAATCAGAATTTTGGGATTTGAGAGAAATGG
AATAATCTTTGTGTCCATATCAACAAGAGTTTTCTTGCGAAGAACAGGCG
ACATATTTTCCACTCTGAGAAAAGCAAGCCATGCTTGTTCTACAGATCTt
cgataattttttctaatgaattcatcatttttcacaAAGTAAAGCACAGC
TTCGTCCTCTTTAACATTTATATGNTACGACCCGGCAATCGTCCGTACGG
GGACGTCCTGCAGCGTACCTTgcgcggcccgtagcccggcgaccggtaAC
AGTGGAGTGATGAAATTCGGCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_038705XLOC_038705Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00061715-proteinTCONS_00061715-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00061715-exon-scaffold_36-1491911889:270187..271302TCONS_00061715-exon-scaffold_36-1491911889:270187..271302Clytia hemisphaericaexon
TCONS_00061715-exon-scaffold_36-1510915933:270187..271302TCONS_00061715-exon-scaffold_36-1510915933:270187..271302Clytia hemisphaericaexon
TCONS_00061715-exon-scaffold_36-1575043694:270187..271302TCONS_00061715-exon-scaffold_36-1575043694:270187..271302Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_36supercontigscaffold_36:270187..271302 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
9.75381	10.1468	3.81894	3.27052	15.355	11.5992	10.0149	9.93471	5.71056	5.73821	5.28047	4.94844	5.1904	5.05407	4.72935	4.52527	4.05617	3.81722	1.49651	1.70171	5.61325	5.02746	11.1016	11.8167	4.8031	6.13453	3.46612	3.51846	8.36362	8.59962
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00061715 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top