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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00061653 ID=TCONS_00061653|Name=TCONS_00061653|organism=Clytia hemisphaerica|type=transcript|length=1719bpRun BLAST on NCBI protein sequence of TCONS_00061653-protein >TCONS_00061653-protein ID=TCONS_00061653-protein|Name=TCONS_00061653-protein|organism=Clytia hemisphaerica|type=polypeptide|length=326bp VGLFNGTIAVYNIRACKDECVLDSIDSPGKHSSPVWQLKWIERDKGTGDERun BLAST on NCBI transcript from alignment at scaffold_36:337232..394164- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00061653 ID=TCONS_00061653|Name=TCONS_00061653|organism=Clytia hemisphaerica|type=transcript|length=56933bp|location=Sequence derived from alignment at scaffold_36:337232..394164- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_36:337232..394164- >TCONS_00061653 ID=TCONS_00061653|Name=TCONS_00061653|organism=Clytia hemisphaerica|type=CDS|length=9810bp|location=Sequence derived from alignment at scaffold_36:337232..394164- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00061653 vs. Swiss-Prot (Human)
Match: WDR78 (WD repeat-containing protein 78 OS=Homo sapiens GN=WDR78 PE=2 SV=1) HSP 1 Score: 288.886 bits (738), Expect = 2.137e-86 Identity = 146/281 (51.96%), Postives = 194/281 (69.04%), Query Frame = 2
Query: 2 VGLFNGTIAVYNIRACKDECVLDSIDSPGKHSSPVWQLKWIERDKGT-GDEKGEVLISASADGRVTQWSIRKGFEFLDLMKLKRLTATKQQGNRNKNKQPENSPSAAKKNDALISRYASCMCFAFHNSDGNVYIAGTEEGYIHRCSCSYNEQFLETYSGHKSSVYKVMWXXXXXXXXXXXXXDWTLRLWHMDKQNPILQFQSSTKAIIDMDWSPISAVMFAAVTEKQIEVWDLSINTLDPLLVNLPVTEVNLTSVKFALNSEALLVGDCEGHVTIYQLREM 841
VG NGTIA+YN+R+ + VLDS +SP KH PVWQL+WIE+D+GT GD K E+L+S SADGR+++W IRKG + DLM+LKR TA + KK++ALISR A MCFAFH D N+Y+AGTEEG+IH+CSCSYNEQ+L+TY GHK VYKV W+PF FLSCS+DW + +W + P L F +T + D+ WSP S+ +FAA E ++E+WDL I+TLDPL+VN + T++ FA ++ LLVGD +G V++Y+LR M
Sbjct: 554 VGYHNGTIAIYNVRSNSNVPVLDSSESPQKHLGPVWQLQWIEQDRGTTGDGKREILVSISADGRISKWVIRKGLDCYDLMRLKRTTAASNKKGG----------EKEKKDEALISRQAPGMCFAFHPKDTNIYLAGTEEGHIHKCSCSYNEQYLDTYRGHKGPVYKVTWNPFCHDVFLSCSADWGVIIWQQENVKPSLSFYPATSVVYDVAWSPKSSYIFAAANENRVEIWDLHISTLDPLIVNTANPGIKFTTILFAKQTDCLLVGDSDGQVSVYELRNM 824 The following BLAST results are available for this feature:
BLAST of TCONS_00061653 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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