TCONS_00061729 (transcript) - C. hemisphaerica

Overview
NameTCONS_00061729
Unique NameTCONS_00061729
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length160

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00061729 ID=TCONS_00061729|Name=TCONS_00061729|organism=Clytia hemisphaerica|type=transcript|length=160bp
CCCCTCCATTGTTCATACTCGTATCGACTTCAAAAAGGatctttatattt
caaattttaaaaggcaAAGTTTTATGTAATAAAAAGGGCCTGTCCGAATC
TCTTAGACTCACACGCACAGATTgtggtttttccaaaaaaacttttaatc
tAGTAAATGA
Run BLAST on NCBI

transcript from alignment at scaffold_36:574412..574571

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00061729 ID=TCONS_00061729|Name=TCONS_00061729|organism=Clytia hemisphaerica|type=transcript|length=160bp|location=Sequence derived from alignment at scaffold_36:574412..574571 (Clytia hemisphaerica)
TCATTTACTagattaaaagtttttttggaaaaaccacAATCTGTGCGTGT
GAGTCTAAGAGATTCGGACAGGCCCTTTTTATTACATAAAACTTtgcctt
ttaaaatttgaaatataaagatCCTTTTTGAAGTCGATACGAGTATGAAC
AATGGAGGGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_038719XLOC_038719Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00061729-exon-scaffold_36-1491911889:574412..574571TCONS_00061729-exon-scaffold_36-1491911889:574412..574571Clytia hemisphaericaexon
TCONS_00061729-exon-scaffold_36-1510915933:574412..574571TCONS_00061729-exon-scaffold_36-1510915933:574412..574571Clytia hemisphaericaexon
TCONS_00061729-exon-scaffold_36-1575043694:574412..574571TCONS_00061729-exon-scaffold_36-1575043694:574412..574571Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_36supercontigscaffold_36:574412..574571 .
Expression
No biomaterial libraries express this feature.
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00061729 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top