TCONS_00061736 (transcript) - C. hemisphaerica

Overview
NameTCONS_00061736
Unique NameTCONS_00061736
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length894

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00061736 ID=TCONS_00061736|Name=TCONS_00061736|organism=Clytia hemisphaerica|type=transcript|length=894bp
CTTACTGCAGTGTTTTGAAGAGTAAGAATCCTATGTGTGACAGTATTGTC
ACACAGTCCCCAGAGTTGACTAGCATAGCGAACATGAGAAGCAAAAATTG
CAcatgataaatgtttagaaggaTGTGAATTGGAACATACAGTAGTGACG
AAGTTTGGatattgccccatttgcccttcTCAATGTAGCAGCAACGAAAG
AAGTATGAACCTTCCAGTTTAGATGATTGTCAAGGTGAACACCCAAATAC
TTCACACTCTTACTTGGTGATAGAATTTTCCCGCAAAGCTTAATTCTTGG
AATACAGTCCATCTGTTGTCTCCAAGGGGaacgaaaaataacaaactcag
ttttgctagcattcaaagaaatttgTTGGCATTAAGCCAGCTGACTAAAA
CTCTGAGATCAGCATTAACCCTCCCACAAAGACtccatacagtttttgaa
aaatttagtaaatgagtatcatcagcaaaatgataTGTTTCAGAGGTTCT
TATACAACGGTGAAGATCGTTTATATACAACAAGAACAGCAGAGGACCCA
AGACTGAACCCTGAGGAACTCCAtgattaatagattttaaaagggaattt
gagcctGCAAGAGAAACATACTGGGAGCGGTTAGTAAGGTAAGATCGGAT
AACAAATCGTTAACAATGCATCTGACTCCGTAGTGATCGagtttttcaag
taaaatttcGTGATCAACTGTGTCGAAAGCCTTTTGTAGATCGACAAATA
CACCACAGGCAAACCCACCATTGTCAAGATAGTTTCGGATACGTTCGACA
ATATTAATGAGTGTATGCTCAGTAGAGGGAGCcttacgaaaaccaaattg
tcgAGAGTAGATTTGATTATGGTTTTCAAGAAAGTCAGAGAGAC
Run BLAST on NCBI

protein sequence of TCONS_00061736-protein

>TCONS_00061736-protein ID=TCONS_00061736-protein|Name=TCONS_00061736-protein|organism=Clytia hemisphaerica|type=polypeptide|length=101bp
LSDFLENHNQIYSRQFGFRKAPSTEHTLINIVERIRNYLDNGGFACGVFV
DLQKAFDTVDHEILLEKLDHYGVRCIVNDLLSDLTLLTAPSMFLLQAQIP
F
Run BLAST on NCBI

transcript from alignment at scaffold_36:708228..709121

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00061736 ID=TCONS_00061736|Name=TCONS_00061736|organism=Clytia hemisphaerica|type=transcript|length=894bp|location=Sequence derived from alignment at scaffold_36:708228..709121 (Clytia hemisphaerica)
GTCTCTCTGACTTTCTTGAAAACCATAATCAAATCTACTCTcgacaattt
ggttttcgtaagGCTCCCTCTACTGAGCATACACTCATTAATATTGTCGA
ACGTATCCGAAACTATCTTGACAATGGTGGGTTTGCCTGTGGTGTATTTG
TCGATCTACAAAAGGCTTTCGACACAGTTGATCACgaaattttacttgaa
aaactCGATCACTACGGAGTCAGATGCATTGTTAACGATTTGTTATCCGA
TCTTACCTTACTAACCGCTCCCAGTATGTTTCTCTTGCaggctcaaattc
ccttttaaaatctattaatcaTGGAGTTCCTCAGGGTTCAGTCTTGGGTC
CTCTGCTGTTCTTGTTGTATATAAACGATCTTCACCGTTGTATAAGAACC
TCTGAAACAtatcattttgctgatgatactcatttactaaatttttcaaa
aactgtatggaGTCTTTGTGGGAGGGTTAATGCTGATCTCAGAGTTTTAG
TCAGCTGGCTTAATGCCAAcaaatttctttgaatgctagcaaaactgagt
ttgttatttttcgttCCCCTTGGAGACAACAGATGGACTGTATTCCAAGA
ATTAAGCTTTGCGGGAAAATTCTATCACCAAGTAAGAGTGTGAAGTATTT
GGGTGTTCACCTTGACAATCATCTAAACTGGAAGGTTCATACTTCTTTCG
TTGCTGCTACATTGAgaagggcaaatggggcaatatCCAAACTTCGTCAC
TACTGTATGTTCCAATTCACAtccttctaaacatttatcatgTGCAATTT
TTGCTTCTCATGTTCGCTATGCTAGTCAACTCTGGGGACTGTGTGACAAT
ACTGTCACACATAGGATTCTTACTCTTCAAAACACTGCAGTAAG

Coding sequence (CDS) from alignment at scaffold_36:708228..709121

>TCONS_00061736 ID=TCONS_00061736|Name=TCONS_00061736|organism=Clytia hemisphaerica|type=CDS|length=306bp|location=Sequence derived from alignment at scaffold_36:708228..709121 (Clytia hemisphaerica)
CTCTCTGACTTTCTTGAAAACCATAATCAAATCTACTCTcgacaatttgg
ttttcgtaagGCTCCCTCTACTGAGCATACACTCATTAATATTGTCGAAC
GTATCCGAAACTATCTTGACAATGGTGGGTTTGCCTGTGGTGTATTTGTC
GATCTACAAAAGGCTTTCGACACAGTTGATCACgaaattttacttgaaaa
actCGATCACTACGGAGTCAGATGCATTGTTAACGATTTGTTATCCGATC
TTACCTTACTAACCGCTCCCAGTATGTTTCTCTTGCaggctcaaattccc
ttttaa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_038726XLOC_038726Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00061736-proteinTCONS_00061736-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00061736-exon-scaffold_36-1491911889:708228..709121TCONS_00061736-exon-scaffold_36-1491911889:708228..709121Clytia hemisphaericaexon
TCONS_00061736-exon-scaffold_36-1510915933:708228..709121TCONS_00061736-exon-scaffold_36-1510915933:708228..709121Clytia hemisphaericaexon
TCONS_00061736-exon-scaffold_36-1575043694:708228..709121TCONS_00061736-exon-scaffold_36-1575043694:708228..709121Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_36supercontigscaffold_36:708228..709121 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
5.75597	6.12433	10.3008	10.2943	5.4576	4.52254	3.60488	5.13446	4.50567	4.18607	5.89853	5.89033	4.23429	3.60771	3.16779	3.15521	2.83908	3.83639	4.44856	5.60452	4.0549	6.26625	1.88576	3.23672	5.25133	5.21226	7.24634	9.91202	4.9646	3.98494
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR000477RT_dom
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00061736 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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