|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00061739 ID=TCONS_00061739|Name=TCONS_00061739|organism=Clytia hemisphaerica|type=transcript|length=2374bp
TAGTTTTAACTTTGAGCCCACCTTCAAAATCAAATCCCTATTTCAATGgc
ttaaaaacaaaggaaatttatttgaaaatacaaaaaaataaagagtgAAT
AAAGCCCAAGAGTAACAAACATAAAAAGACAACTTTCTTGAAAAATTAAT
gacaaatttgaattaaaaaagcctGTAAAGAATGGAAAGaatgtgtaaaa
ataaaaatatatactaCATGTAcataaaacctttttaaaaatgttttttt
tgtaatcttatttttcaaacaaaagactgaataaaaaagttgaatCTTGA
ATTGGATCTTGtcgttgaaaaagttgaatctTGCTTCTTTTTAATTCTCA
ACAGGGTGTAGAGACttccaaaagtttcaaaagatTATAATTTGCCTTTA
AGAATATCAAGCTAAGAAAATTGATGGTAAATAATATTCTTTATAAAAAT
TACTACACTTTTCTGACaactcagaaaaaaaattggtatcaaATCTAATT
TCATTTAATATAAAACCATGGGCAGTATAAacgaaaaagaaacatttttt
caagttcCACACACCCATTTGAAATTGACACTGGCTGAAATATTGATGAG
ATTCTCTCAATCTCAGTCCTTGGTCAGTTTTTATCATGTAACGAAGCTTT
GCATTTTCATCAGTCGGGGAAAGGTAGCTTATTGAATACGGACATTTGAT
TTCGATACACACTTCCTCCTTACAGCAATCACATGAAAATATGCCATCAG
GACTAGCTCCAATAAAAGGTTTATTCTTGTGAAGAAGCAAACCACAGTCT
CTGATTTTGGCTCCTTTATGTTtagtttttagaaaatcaagaagTTTTGA
AGATGCCATTCCCTCCATTTCTCTACCATATTTCAATGCAGGATTATTTG
GGTTTAAGAAAGTAAACCCAGCTATTTTTTTCGTTAAACTCCACATTAAA
ACTTCACTTCGTTCATCCCCTTTCTGATATCCTTTTATAGTCTCCATTTT
AGTTTTCACTTCATGCACTTTAGAAGCAGTTATGACACTTTTTCTATGTT
GATACCATAGTTCATTGGTACTCTGTCCTTTAGTAGCTACCTCAATTTTA
TCAATAATATCATTTGTCAAATCATTGGTAACATTTGTCAGAAATTCATC
TGTCGATTTCGAGGTTAAAATAACATCATCAATACATGGTAAATTTGAAA
CGTGATCTGGTTTTCTTACAGATTCAACAACAATAACATCATCAATACAT
GGTAAATCTGAAACGTGATCTGGTTTTCTTACAGATTCAACAACAAAGTC
TATCTCAGGTTGAGGAGCTGCTGTTGAGAGTGTGGTGTCCTTCATTAGGT
CTTTTTCTTTTAGCGTTTccacaattttttcaaaagatagtgtttttgta
gtttttctttttattggtAATGGATGATAATTCTTCTTAGGGGTACTAAA
AAGCTTCTTTCTCGACTTGCCTCGCTTAGCAAAATCATCCCTATTAAAAT
CAATATTCTTTGCTTTAGATGGTTGTACCTCATTACGATTAGGTAGCCAT
TCGTTTGGTAGAGATGTTGATGACGGATTTGACAAACCATAACGCATAGC
TGCCTCAATGCGAAACAAGGCAGCAGCAACATGATTACAGGAAGAACCCA
TACCTGCCATACATGTACAGTGGGCTTCAAGCACATTTCCTGTGTCCTTT
GAAAAAAGCAGCCAAAGTTTATGAAGAGTGTCTGATATTCTCTGTGATGG
ACGGCAATCAGTTCTCATCAGACAAAATGGTGTGTCTTTCAAGGGATGAA
AGTCTATCTTTCCAAGCCATCCTCTCTCGAAATAGCTATATGCTTTAGAC
TTCTTGTAGTCATTCAAGTCTCCGATGGTTTCATCCAACATAAGAAATTT
TATGATATATAATGTTGATATCATTGGCCACTCCTTGACTCCAATTGCTT
CAGGTTTCCAACCATCTTGAAGATTGAATGGATCGGGGATTGAGATACCT
TTGCATGTCAGTTTATCATTATATTCTCTGAGCAGTTCTCCTTCAATTTC
CTCTGCAGTTTTTACAGGCTTCACCCCATTTTCAATTGCAACCAACACTC
TAGCTCTGAGGTTTTCTTTATTCCCAGAAAGTCTCATGTCTCGAAGTCTG
AGAAAACTTTTCAGCTcattaactttcatttttttcacagtgtTGTAATC
CATCTTCTTAAAACTTCAAATTCCACAATAATTGATCAAAATTTCACTTA
ATTAACTGCATTCAAAGGTCATTATAACTGGCTTCCAACTAATTTCTACT
TAATTTATCCTCGTTTctgcaatgttttgattttttatcacCCTAAACTC
GTACCAGTCCTTTTTTTGCGTCAT Run BLAST on NCBI protein sequence of TCONS_00061739-protein >TCONS_00061739-protein ID=TCONS_00061739-protein|Name=TCONS_00061739-protein|organism=Clytia hemisphaerica|type=polypeptide|length=598bp
MDYNTVKKMKVNELKSFLRLRDMRLSGNKENLRARVLVAIENGVKPVKTA
EEIEGELLREYNDKLTCKGISIPDPFNLQDGWKPEAIGVKEWPMISTLYI
IKFLMLDETIGDLNDYKKSKAYSYFERGWLGKIDFHPLKDTPFCLMRTDC
RPSQRISDTLHKLWLLFSKDTGNVLEAHCTCMAGMGSSCNHVAAALFRIE
AAMRYGLSNPSSTSLPNEWLPNRNEVQPSKAKNIDFNRDDFAKRGKSRKK
LFSTPKKNYHPLPIKRKTTKTLSFEKIVETLKEKDLMKDTTLSTAAPQPE
IDFVVESVRKPDHVSDLPCIDDVIVVESVRKPDHVSNLPCIDDVILTSKS
TDEFLTNVTNDLTNDIIDKIEVATKGQSTNELWYQHRKSVITASKVHEVK
TKMETIKGYQKGDERSEVLMWSLTKKIAGFTFLNPNNPALKYGREMEGMA
SSKLLDFLKTKHKGAKIRDCGLLLHKNKPFIGASPDGIFSCDCCKEEVCI
EIKCPYSISYLSPTDENAKLRYMIKTDQGLRLRESHQYFSQCQFQMGVWN
LKKCFFFVYTAHGFILNEIRFDTNFFSELSEKCSNFYKEYYLPSIFLA Run BLAST on NCBI transcript from alignment at scaffold_36:966182..968555 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00061739 ID=TCONS_00061739|Name=TCONS_00061739|organism=Clytia hemisphaerica|type=transcript|length=2374bp|location=Sequence derived from alignment at scaffold_36:966182..968555 (Clytia hemisphaerica)
ATGACGCAAAAAAAGGACTGGTACGAGTTTAGGgtgataaaaaatcaaaa
cattgcagAAACGAGGATAAATTAAGTAGAAATTAGTTGGAAGCCAGTTA
TAATGACCTTTGAATGCAGTTAATTAAGTGAAATTTTGATCAATTATTGT
GGAATTTGAAGTTTTAAGAAGATGGATTACAacactgtgaaaaaaatgaa
agttaatgAGCTGAAAAGTTTTCTCAGACTTCGAGACATGAGACTTTCTG
GGAATAAAGAAAACCTCAGAGCTAGAGTGTTGGTTGCAATTGAAAATGGG
GTGAAGCCTGTAAAAACTGCAGAGGAAATTGAAGGAGAACTGCTCAGAGA
ATATAATGATAAACTGACATGCAAAGGTATCTCAATCCCCGATCCATTCA
ATCTTCAAGATGGTTGGAAACCTGAAGCAATTGGAGTCAAGGAGTGGCCA
ATGATATCAACATTATATATCATAAAATTTCTTATGTTGGATGAAACCAT
CGGAGACTTGAATGACTACAAGAAGTCTAAAGCATATAGCTATTTCGAGA
GAGGATGGCTTGGAAAGATAGACTTTCATCCCTTGAAAGACACACCATTT
TGTCTGATGAGAACTGATTGCCGTCCATCACAGAGAATATCAGACACTCT
TCATAAACTTTGGCTGCTTTTTTCAAAGGACACAGGAAATGTGCTTGAAG
CCCACTGTACATGTATGGCAGGTATGGGTTCTTCCTGTAATCATGTTGCT
GCTGCCTTGTTTCGCATTGAGGCAGCTATGCGTTATGGTTTGTCAAATCC
GTCATCAACATCTCTACCAAACGAATGGCTACCTAATCGTAATGAGGTAC
AACCATCTAAAGCAAAGAATATTGATTTTAATAGGGATGATTTTGCTAAG
CGAGGCAAGTCGAGAAAGAAGCTTTTTAGTACCCCTAAGAAGAATTATCA
TCCATTaccaataaaaagaaaaactacaaaaacactatcttttgaaaaaa
ttgtggAAACGCTAAAAGAAAAAGACCTAATGAAGGACACCACACTCTCA
ACAGCAGCTCCTCAACCTGAGATAGACTTTGTTGTTGAATCTGTAAGAAA
ACCAGATCACGTTTCAGATTTACCATGTATTGATGATGTTATTGTTGTTG
AATCTGTAAGAAAACCAGATCACGTTTCAAATTTACCATGTATTGATGAT
GTTATTTTAACCTCGAAATCGACAGATGAATTTCTGACAAATGTTACCAA
TGATTTGACAAATGATATTATTGATAAAATTGAGGTAGCTACTAAAGGAC
AGAGTACCAATGAACTATGGTATCAACATAGAAAAAGTGTCATAACTGCT
TCTAAAGTGCATGAAGTGAAAACTAAAATGGAGACTATAAAAGGATATCA
GAAAGGGGATGAACGAAGTGAAGTTTTAATGTGGAGTTTAACGAAAAAAA
TAGCTGGGTTTACTTTCTTAAACCCAAATAATCCTGCATTGAAATATGGT
AGAGAAATGGAGGGAATGGCATCTTCAAAActtcttgattttctaaaaac
taAACATAAAGGAGCCAAAATCAGAGACTGTGGTTTGCTTCTTCACAAGA
ATAAACCTTTTATTGGAGCTAGTCCTGATGGCATATTTTCATGTGATTGC
TGTAAGGAGGAAGTGTGTATCGAAATCAAATGTCCGTATTCAATAAGCTA
CCTTTCCCCGACTGATGAAAATGCAAAGCTTCGTTACATGATAAAAACTG
ACCAAGGACTGAGATTGAGAGAATCTCATCAATATTTCAGCCAGTGTCAA
TTTCAAATGGGTGTGTGgaacttgaaaaaatgtttctttttcgtTTATAC
TGCCCATGGTTTTATATTAAATGAAATTAGATttgataccaatttttttt
ctgagttGTCAGAAAAGTGTAGTAATTTTTATAAAGAATATTATTTACCA
TCAATTTTCTTAGCTTGATATTCTTAAAGGCAAATTATAatcttttgaaa
cttttggaaGTCTCTACACCCTGTTGAGAATTAAAAAGAAGCAagattca
actttttcaacgaCAAGATCCAATTCAAGattcaacttttttattcagtc
ttttgtttgaaaaataagattacaaaaaaaacatttttaaaaaggtttta
tgTACATGtagtatatatttttatttttacacattCTTTCCATTCTTTAC
aggcttttttaattcaaatttgtcATTAATTTTTCAAGAAAGTTGTCTTT
TTATGTTTGTTACTCTTGGGCTTTATTcactctttatttttttgtatttt
caaataaatttcctttgtttttaagcCATTGAAATAGGGATTTGATTTTG
AAGGTGGGCTCAAAGTTAAAACTA Coding sequence (CDS) from alignment at scaffold_36:966182..968555 >TCONS_00061739 ID=TCONS_00061739|Name=TCONS_00061739|organism=Clytia hemisphaerica|type=CDS|length=1797bp|location=Sequence derived from alignment at scaffold_36:966182..968555 (Clytia hemisphaerica)
ATGGATTACAacactgtgaaaaaaatgaaagttaatgAGCTGAAAAGTTT
TCTCAGACTTCGAGACATGAGACTTTCTGGGAATAAAGAAAACCTCAGAG
CTAGAGTGTTGGTTGCAATTGAAAATGGGGTGAAGCCTGTAAAAACTGCA
GAGGAAATTGAAGGAGAACTGCTCAGAGAATATAATGATAAACTGACATG
CAAAGGTATCTCAATCCCCGATCCATTCAATCTTCAAGATGGTTGGAAAC
CTGAAGCAATTGGAGTCAAGGAGTGGCCAATGATATCAACATTATATATC
ATAAAATTTCTTATGTTGGATGAAACCATCGGAGACTTGAATGACTACAA
GAAGTCTAAAGCATATAGCTATTTCGAGAGAGGATGGCTTGGAAAGATAG
ACTTTCATCCCTTGAAAGACACACCATTTTGTCTGATGAGAACTGATTGC
CGTCCATCACAGAGAATATCAGACACTCTTCATAAACTTTGGCTGCTTTT
TTCAAAGGACACAGGAAATGTGCTTGAAGCCCACTGTACATGTATGGCAG
GTATGGGTTCTTCCTGTAATCATGTTGCTGCTGCCTTGTTTCGCATTGAG
GCAGCTATGCGTTATGGTTTGTCAAATCCGTCATCAACATCTCTACCAAA
CGAATGGCTACCTAATCGTAATGAGGTACAACCATCTAAAGCAAAGAATA
TTGATTTTAATAGGGATGATTTTGCTAAGCGAGGCAAGTCGAGAAAGAAG
CTTTTTAGTACCCCTAAGAAGAATTATCATCCATTaccaataaaaagaaa
aactacaaaaacactatcttttgaaaaaattgtggAAACGCTAAAAGAAA
AAGACCTAATGAAGGACACCACACTCTCAACAGCAGCTCCTCAACCTGAG
ATAGACTTTGTTGTTGAATCTGTAAGAAAACCAGATCACGTTTCAGATTT
ACCATGTATTGATGATGTTATTGTTGTTGAATCTGTAAGAAAACCAGATC
ACGTTTCAAATTTACCATGTATTGATGATGTTATTTTAACCTCGAAATCG
ACAGATGAATTTCTGACAAATGTTACCAATGATTTGACAAATGATATTAT
TGATAAAATTGAGGTAGCTACTAAAGGACAGAGTACCAATGAACTATGGT
ATCAACATAGAAAAAGTGTCATAACTGCTTCTAAAGTGCATGAAGTGAAA
ACTAAAATGGAGACTATAAAAGGATATCAGAAAGGGGATGAACGAAGTGA
AGTTTTAATGTGGAGTTTAACGAAAAAAATAGCTGGGTTTACTTTCTTAA
ACCCAAATAATCCTGCATTGAAATATGGTAGAGAAATGGAGGGAATGGCA
TCTTCAAAActtcttgattttctaaaaactaAACATAAAGGAGCCAAAAT
CAGAGACTGTGGTTTGCTTCTTCACAAGAATAAACCTTTTATTGGAGCTA
GTCCTGATGGCATATTTTCATGTGATTGCTGTAAGGAGGAAGTGTGTATC
GAAATCAAATGTCCGTATTCAATAAGCTACCTTTCCCCGACTGATGAAAA
TGCAAAGCTTCGTTACATGATAAAAACTGACCAAGGACTGAGATTGAGAG
AATCTCATCAATATTTCAGCCAGTGTCAATTTCAAATGGGTGTGTGgaac
ttgaaaaaatgtttctttttcgtTTATACTGCCCATGGTTTTATATTAAA
TGAAATTAGATttgataccaattttttttctgagttGTCAGAAAAGTGTA
GTAATTTTTATAAAGAATATTATTTACCATCAATTTTCTTAGCTTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00061739-exon-scaffold_36-1491911889:966182..968555 | TCONS_00061739-exon-scaffold_36-1491911889:966182..968555 | Clytia hemisphaerica | exon |
| TCONS_00061739-exon-scaffold_36-1510915933:966182..968555 | TCONS_00061739-exon-scaffold_36-1510915933:966182..968555 | Clytia hemisphaerica | exon |
| TCONS_00061739-exon-scaffold_36-1575043694:966182..968555 | TCONS_00061739-exon-scaffold_36-1575043694:966182..968555 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_36 | supercontig | scaffold_36:966182..968555 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0004518 | nuclease activity |
| GO:0003677 | DNA binding |
| GO:0008270 | zinc ion binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0003677 |
DNA binding |
| molecular_function |
GO:0004518 |
nuclease activity |
| molecular_function |
GO:0008270 |
zinc ion binding |
Blast
The following BLAST results are available for this feature:
|
