|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00061742 ID=TCONS_00061742|Name=TCONS_00061742|organism=Clytia hemisphaerica|type=transcript|length=1171bp
ttttggttagCGGTGTAAGCGACCGGTCCGGTtacacagactctatccgc
cgcgcaacatattacgttttataatttcaaactatgttatatcataataa
tatattataccaacgatacccggggggggggcactcaaggtaaatgacct
accagacgttcggcccttaagggtaggtttttcatagttcagctagtgca
ctgtaagggTAGGAAATTACAAAACTGCACCTGAACTGCACTGTAagggt
aggaaattgtgattaaaggccaattttttggtaaaattggtacaaaattg
gtcaattttggaggaaaaattccacattttctttgaaaattgcaaaaatt
ttcccccttacgggcgaaaaattttgaaatagtgcactgtaagggtatga
tttttcatggtaattcactgcactgtaagggtccgattttagaagccaaa
ttttgggccgaacgtatggtcgttttcagatcgagtgccccccccgggca
aCGATAGCATTGTCTAAACTTTGATATGACCCTTTTCATTTATCTACCGC
TCAAACATGGTGACCAAGCTCGTATGAAGAGCGGTCATTGTTACAACATT
TGTAAATCTCCCTCAAAAATTTCATCTAATCTTTCCGGTAAGGTTTACTT
GAAGCTCCAATACTGTTCAAATAGACCAAACAAGATAGAATCACAAAAGT
GACGTGTGGACATGAATCATCAATGACATCATCAATCGATAAACTCGATC
GAACAAATCGCACGACTCGATACGTCAAATAAGGTAACCATAACACGAAA
AAATTCCCTGCGACATAACATAaatacaatatttttctgaTGCGATAATG
TTGCTTCTTGAATTTGTGAATCAGTCTGCATGCTTATCATCTGTTTCTTA
GTAGACACTAAATTCCCTAGTAACGGTATTATATTACTGATAGCCAAGTT
GACCATATTCATAGCATCATAATGATACTTCAAAGCTATTAACATACTGA
TTGAATAGCCCCAAATCAAAACATAGCCATACAGCATATGTTTTCGTTTA
AGCATTCCATTCCTTAAAGGATACCGTAAAGTTAAGAATCTCTCCGCGCT
CATTAGCATAGAACGAAACTAGCAATCGGTAAAACAGTTCGAAAGACGAT
ATTAATATCTTGTACTCGTAT Run BLAST on NCBI protein sequence of TCONS_00061742-protein >TCONS_00061742-protein ID=TCONS_00061742-protein|Name=TCONS_00061742-protein|organism=Clytia hemisphaerica|type=polypeptide|length=125bp
MLMSAERFLTLRYPLRNGMLKRKHMLYGYVLIWGYSISMLIALKYHYDAM
NMVNLAISNIIPLLGNLVSTKKQMISMQTDSQIQEATLSHQKNIVFMLCR
REFFRVMVTLFDVSSRAICSIEFID Run BLAST on NCBI transcript from alignment at scaffold_36:981149..982319 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00061742 ID=TCONS_00061742|Name=TCONS_00061742|organism=Clytia hemisphaerica|type=transcript|length=1171bp|location=Sequence derived from alignment at scaffold_36:981149..982319 (Clytia hemisphaerica)
ATACGAGTACAAGATATTAATATCGTCTTTCGAACTGTTTTACCGATTGC
TAGTTTCGTTCTATGCTAATGAGCGCGGAGAGATTCTTAACTTTACGGTA
TCCTTTAAGGAATGGAATGCTTAAACGAAAACATATGCTGTATGGCTATG
TTTTGATTTGGGGCTATTCAATCAGTATGTTAATAGCTTTGAAGTATCAT
TATGATGCTATGAATATGGTCAACTTGGCTATCAGTAATATAATACCGTT
ACTAGGGAATTTAGTGTCTACTAAGAAACAGATGATAAGCATGCAGACTG
ATTCACAAATTCAAGAAGCAACATTATCGCAtcagaaaaatattgtattT
ATGTTATGTCGCAGGGAATTTTTTCGTGTTATGGTTACCTTATTTGACGT
ATCGAGTCGTGCGATTTGTTCGATCGAGTTTATCGATTGATGATGTCATT
GATGATTCATGTCCACACGTCACTTTTGTGATTCTATCTTGTTTGGTCTA
TTTGAACAGTATTGGAGCTTCAAGTAAACCTTACCGGAAAGATTAGATGA
AATTTTTGAGGGAGATTTACAAATGTTGTAACAATGACCGCTCTTCATAC
GAGCTTGGTCACCATGTTTGAGCGGTAGATAAATGAAAAGGGTCATATCA
AAGTTTAGACAATGCTATCGttgcccggggggggcactcgatctgaaaac
gaccatacgttcggcccaaaatttggcttctaaaatcggacccttacagt
gcagtgaattaccatgaaaaatcatacccttacagtgcactatttcaaaa
tttttcgcccgtaagggggaaaatttttgcaattttcaaagaaaatgtgg
aatttttcctccaaaattgaccaattttgtaccaattttaccaaaaaatt
ggcctttaatcacaatttcctaccctTACAGTGCAGTTCAGGTGCAGTTT
TGTAATTTCCTAcccttacagtgcactagctgaactatgaaaaacctacc
cttaagggccgaacgtctggtaggtcatttaccttgagtgcccccccccc
gggtatcgttggtataatatattattatgatataacatagtttgaaatta
taaaacgtaatatgttgcgcggcggatagagtctgtgtaACCGGACCGGT
CGCTTACACCGctaaccaaaa Coding sequence (CDS) from alignment at scaffold_36:981149..982319 >TCONS_00061742 ID=TCONS_00061742|Name=TCONS_00061742|organism=Clytia hemisphaerica|type=CDS|length=378bp|location=Sequence derived from alignment at scaffold_36:981149..982319 (Clytia hemisphaerica)
ATGCTAATGAGCGCGGAGAGATTCTTAACTTTACGGTATCCTTTAAGGAA
TGGAATGCTTAAACGAAAACATATGCTGTATGGCTATGTTTTGATTTGGG
GCTATTCAATCAGTATGTTAATAGCTTTGAAGTATCATTATGATGCTATG
AATATGGTCAACTTGGCTATCAGTAATATAATACCGTTACTAGGGAATTT
AGTGTCTACTAAGAAACAGATGATAAGCATGCAGACTGATTCACAAATTC
AAGAAGCAACATTATCGCAtcagaaaaatattgtattTATGTTATGTCGC
AGGGAATTTTTTCGTGTTATGGTTACCTTATTTGACGTATCGAGTCGTGC
GATTTGTTCGATCGAGTTTATCGATTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00061742-exon-scaffold_36-1491911889:981149..982319 | TCONS_00061742-exon-scaffold_36-1491911889:981149..982319 | Clytia hemisphaerica | exon |
| TCONS_00061742-exon-scaffold_36-1510915933:981149..982319 | TCONS_00061742-exon-scaffold_36-1510915933:981149..982319 | Clytia hemisphaerica | exon |
| TCONS_00061742-exon-scaffold_36-1575043694:981149..982319 | TCONS_00061742-exon-scaffold_36-1575043694:981149..982319 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_36 | supercontig | scaffold_36:981149..982319 . |
Blast
The following BLAST results are available for this feature:
|
