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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00061757 ID=TCONS_00061757|Name=TCONS_00061757|organism=Clytia hemisphaerica|type=transcript|length=1031bp
CTTAAATTTAATGAAATAAGAACCAGTGCAAACTCGTGTCCATTCCTTTA
GCTCGTCTTTTTGATAATTCTGGAAATGGTTACATCACAtctatcagtaa
aatcaaataaTGGCGCAAGTAGCGGCTCTGGGTAGGAGATTGGAACAAGT
GCACTATTATTGTGCAAATGATCCAAACTCCAAACAAAGTCTCCAGAATT
TCCTTCAAAACTCCTTGACAAAAAATGCCAGGGTCTTCTAATTTAATCCA
AACTTTGTCTGAGGTATTTAGTTACTGAGGTGCTATATATAACCAGGCTA
CACATTGTATACGCGATTGTACACCCTCTATCTTGCACTGTTGAAAGTTT
TCAGCAGCAATTATGTTACCAAGTATCTTTTCATCCTTCGTTTGATAGTG
CCAGAAAAAGGTAATAAAATCAAGACTAACGCATCCACAATACTTCCCAC
TGGATACAACATAGTTAAAGAATCTCTCAATTCTTTGGCTATCTGGACAC
CTTGAAAAGCATGAAAGGCGTAAATTAGATCGGGAATAGCCCAAAAGATG
ATATAAGTCACAATCAAGATAGTCGGCGTGTAGAAACCTCTTTTGATTTG
CTTTGGTGAGGTTATCACCACATTTAGGCTTCCACTGCTGGTATTTAGAC
TAGCGACTTGTTTTCGCTCTGCAGCCCAATTTTGTCGTATTTTCATGTAC
AAATAGCCATAAGAAAGCAAAGAAACTGCAAGAAAAAGAAAGTCGAAAAT
TGGTACCAGATAAAGgaaaatgatattgaaaataagtctCCAATTCGAAG
GTTTCTGCCATGGCTGATAAATCACGACAATCAATACAGTCAAGGTGACG
GCTAGACTAGGAACCAAGCAAATGACaattttcgttttgagagttgaCCA
TTTAACATTATAGTAGATACTTAAGCGGACGCTTAAGAAGCGATCGAAAG
TGAGTGCAATCATCATTAGCGTGTACAGCAAATTAACAAGTGTTAGTTGC
AGGTATTCAGCGTAGGTTTGAGTCAATCTGT Run BLAST on NCBI protein sequence of TCONS_00061757-protein >TCONS_00061757-protein ID=TCONS_00061757-protein|Name=TCONS_00061757-protein|organism=Clytia hemisphaerica|type=polypeptide|length=222bp
RLTQTYAEYLQLTLVNLLYTLMMIALTFDRFLSVRLSIYYNVKWSTLKTK
IVICLVPSLAVTLTVLIVVIYQPWQKPSNWRLIFNIIFLYLVPIFDFLFL
AVSLLSYGYLYMKIRQNWAAERKQVASLNTSSGSLNVVITSPKQIKRGFY
TPTILIVTYIIFWAIPDLIYAFHAFQGVQIAKELRDSLTMLYPVGSIVDA
LVLILLPFSGTIKRRMKRYLVT Run BLAST on NCBI transcript from alignment at scaffold_36:1219762..1220792 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00061757 ID=TCONS_00061757|Name=TCONS_00061757|organism=Clytia hemisphaerica|type=transcript|length=1031bp|location=Sequence derived from alignment at scaffold_36:1219762..1220792 (Clytia hemisphaerica)
ACAGATTGACTCAAACCTACGCTGAATACCTGCAACTAACACTTGTTAAT
TTGCTGTACACGCTAATGATGATTGCACTCACTTTCGATCGCTTCTTAAG
CGTCCGCTTAAGTATCTACTATAATGTTAAATGGtcaactctcaaaacga
aaattGTCATTTGCTTGGTTCCTAGTCTAGCCGTCACCTTGACTGTATTG
ATTGTCGTGATTTATCAGCCATGGCAGAAACCTTCGAATTGGagacttat
tttcaatatcattttcCTTTATCTGGTACCAATTTTCGACTTTCTTTTTC
TTGCAGTTTCTTTGCTTTCTTATGGCTATTTGTACATGAAAATACGACAA
AATTGGGCTGCAGAGCGAAAACAAGTCGCTAGTCTAAATACCAGCAGTGG
AAGCCTAAATGTGGTGATAACCTCACCAAAGCAAATCAAAAGAGGTTTCT
ACACGCCGACTATCTTGATTGTGACTTATATCATCTTTTGGGCTATTCCC
GATCTAATTTACGCCTTTCATGCTTTTCAAGGTGTCCAGATAGCCAAAGA
ATTGAGAGATTCTTTAACTATGTTGTATCCAGTGGGAAGTATTGTGGATG
CGTTAGTCTTGATTTTATTACCTTTTTCTGGCACTATCAAACGAAGGATG
AAAAGATACTTGGTAACATAATTGCTGCTGAAAACTTTCAACAGTGCAAG
ATAGAGGGTGTACAATCGCGTATACAATGTGTAGCCTGGTTATATATAGC
ACCTCAGTAACTAAATACCTCAGACAAAGTTTGGATTAAATTAGAAGACC
CTGGCATTTTTTGTCAAGGAGTTTTGAAGGAAATTCTGGAGACTTTGTTT
GGAGTTTGGATCATTTGCACAATAATAGTGCACTTGTTCCAATCTCCTAC
CCAGAGCCGCTACTTGCGCCAttatttgattttactgatagaTGTGATGT
AACCATTTCCAGAATTATCAAAAAGACGAGCTAAAGGAATGGACACGAGT
TTGCACTGGTTCTTATTTCATTAAATTTAAG Coding sequence (CDS) from alignment at scaffold_36:1219762..1220792 >TCONS_00061757 ID=TCONS_00061757|Name=TCONS_00061757|organism=Clytia hemisphaerica|type=CDS|length=669bp|location=Sequence derived from alignment at scaffold_36:1219762..1220792 (Clytia hemisphaerica)
AGATTGACTCAAACCTACGCTGAATACCTGCAACTAACACTTGTTAATTT
GCTGTACACGCTAATGATGATTGCACTCACTTTCGATCGCTTCTTAAGCG
TCCGCTTAAGTATCTACTATAATGTTAAATGGtcaactctcaaaacgaaa
attGTCATTTGCTTGGTTCCTAGTCTAGCCGTCACCTTGACTGTATTGAT
TGTCGTGATTTATCAGCCATGGCAGAAACCTTCGAATTGGagacttattt
tcaatatcattttcCTTTATCTGGTACCAATTTTCGACTTTCTTTTTCTT
GCAGTTTCTTTGCTTTCTTATGGCTATTTGTACATGAAAATACGACAAAA
TTGGGCTGCAGAGCGAAAACAAGTCGCTAGTCTAAATACCAGCAGTGGAA
GCCTAAATGTGGTGATAACCTCACCAAAGCAAATCAAAAGAGGTTTCTAC
ACGCCGACTATCTTGATTGTGACTTATATCATCTTTTGGGCTATTCCCGA
TCTAATTTACGCCTTTCATGCTTTTCAAGGTGTCCAGATAGCCAAAGAAT
TGAGAGATTCTTTAACTATGTTGTATCCAGTGGGAAGTATTGTGGATGCG
TTAGTCTTGATTTTATTACCTTTTTCTGGCACTATCAAACGAAGGATGAA
AAGATACTTGGTAACATAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00061757-exon-scaffold_36-1491911889:1219762..1220792 | TCONS_00061757-exon-scaffold_36-1491911889:1219762..1220792 | Clytia hemisphaerica | exon |
| TCONS_00061757-exon-scaffold_36-1510915933:1219762..1220792 | TCONS_00061757-exon-scaffold_36-1510915933:1219762..1220792 | Clytia hemisphaerica | exon |
| TCONS_00061757-exon-scaffold_36-1575043694:1219762..1220792 | TCONS_00061757-exon-scaffold_36-1575043694:1219762..1220792 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_36 | supercontig | scaffold_36:1219762..1220792 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR000276 | GPCR_Rhodpsn |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0007186 | G-protein coupled receptor signaling pathway |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0004930 | G-protein coupled receptor activity |
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0016021 | integral component of membrane |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0007186 |
G-protein coupled receptor signaling pathway |
| cellular_component |
GO:0016021 |
integral component of membrane |
| molecular_function |
GO:0004930 |
G-protein coupled receptor activity |
Blast
The following BLAST results are available for this feature:
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